Wall clock time and date at job start Tue Mar 31 2020 11:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99458 * 2 1 4 4 O 1.20828 * 120.00050 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99723 * 180.02562 * 3 2 1 6 6 H 1.08990 * 115.54998 * 35.28553 * 5 3 2 7 7 C 1.53000 * 117.49619 * 249.57770 * 5 3 2 8 8 C 1.53004 * 60.00106 * 252.51210 * 7 5 3 9 9 H 1.08999 * 117.51916 * 252.51977 * 8 7 5 10 10 C 1.50699 * 117.49806 * 107.48891 * 8 7 5 11 11 O 1.21288 * 119.99976 * 18.40182 * 10 8 7 12 12 N 1.34778 * 120.00029 * 198.39051 * 10 8 7 13 13 C 1.46496 * 120.00005 * 4.26668 * 12 10 8 14 14 C 1.50705 * 109.47246 * 89.11826 * 13 12 10 15 15 H 1.07998 * 119.99947 * 2.06937 * 14 13 12 16 16 C 1.37879 * 120.00103 * 181.79290 * 14 13 12 17 17 N 1.31506 * 119.99864 * 174.91922 * 16 14 13 18 18 Si 1.86799 * 119.99700 * 354.91815 * 16 14 13 19 19 H 1.48506 * 109.47180 * 94.82013 * 18 16 14 20 20 H 1.48503 * 109.46983 * 214.81811 * 18 16 14 21 21 H 1.48501 * 109.47710 * 334.81708 * 18 16 14 22 22 C 1.39923 * 120.00196 * 184.26182 * 12 10 8 23 23 C 1.38880 * 120.06844 * 301.38977 * 22 12 10 24 24 C 1.38113 * 119.92407 * 179.72063 * 23 22 12 25 25 C 1.38284 * 120.07216 * 0.57032 * 24 23 22 26 26 C 1.50700 * 119.93044 * 179.69971 * 25 24 23 27 27 C 1.38279 * 120.14063 * 359.68394 * 25 24 23 28 28 C 1.38108 * 120.07276 * 0.03925 * 27 25 24 29 29 H 1.08998 * 109.47022 * 299.99666 * 1 2 3 30 30 H 1.08992 * 109.47614 * 60.00259 * 1 2 3 31 31 H 1.09008 * 109.46553 * 180.02562 * 1 2 3 32 32 H 1.09000 * 117.49718 * 145.02180 * 7 5 3 33 33 H 1.08993 * 117.50423 * 359.97438 * 7 5 3 34 34 H 1.09003 * 109.47222 * 329.11836 * 13 12 10 35 35 H 1.09001 * 109.47496 * 209.12158 * 13 12 10 36 36 H 0.97009 * 119.99642 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.03324 * 359.97438 * 23 22 12 38 38 H 1.08005 * 119.96256 * 180.25012 * 24 23 22 39 39 H 1.08997 * 109.47378 * 269.98385 * 26 25 24 40 40 H 1.09005 * 109.46806 * 29.98236 * 26 25 24 41 41 H 1.08998 * 109.46900 * 149.97885 * 26 25 24 42 42 H 1.08000 * 119.96389 * 180.02562 * 27 25 24 43 43 H 1.07997 * 120.04047 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0775 0.4982 -0.5690 7 6 4.2474 1.7846 1.2711 8 6 4.2007 2.6671 0.0221 9 1 5.1293 2.8061 -0.5314 10 6 3.2727 3.8544 0.0433 11 8 2.8576 4.2808 1.1002 12 7 2.9042 4.4424 -1.1121 13 6 3.3296 3.8718 -2.3926 14 6 2.3127 2.8599 -2.8542 15 1 1.4207 2.6859 -2.2707 16 6 2.5183 2.1604 -4.0245 17 7 1.6830 1.2076 -4.3763 18 14 3.9833 2.5664 -5.1100 19 1 5.1106 1.6575 -4.7804 20 1 3.6066 2.3908 -6.5357 21 1 4.3974 3.9733 -4.8771 22 6 2.1154 5.5978 -1.0886 23 6 0.8696 5.5774 -0.4751 24 6 0.0958 6.7212 -0.4486 25 6 0.5553 7.8825 -1.0423 26 6 -0.2945 9.1268 -1.0175 27 6 1.7930 7.9046 -1.6585 28 6 2.5740 6.7658 -1.6835 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 5.2071 1.3429 1.5396 33 1 3.6071 2.0632 2.1080 34 1 4.2970 3.3848 -2.2699 35 1 3.4143 4.6662 -3.1341 36 1 1.8279 0.7152 -5.1995 37 1 0.5081 4.6694 -0.0158 38 1 -0.8714 6.7071 0.0318 39 1 -0.9360 9.1464 -1.8984 40 1 -0.9114 9.1275 -0.1187 41 1 0.3492 10.0064 -1.0170 42 1 2.1492 8.8132 -2.1210 43 1 3.5408 6.7838 -2.1646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171402066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:03 Heat of formation + Delta-G solvation = -75.096528 kcal Electronic energy + Delta-G solvation = -27805.746439 eV Core-core repulsion = 24009.737194 eV Total energy + Delta-G solvation = -3796.009244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.00014 -40.99505 -39.67879 -37.76878 -36.93113 -36.61963 -34.60478 -32.81384 -31.86704 -29.84844 -29.17492 -27.70192 -25.72847 -24.99726 -24.39772 -23.37263 -22.18673 -21.58460 -20.10397 -19.09527 -18.94704 -18.23357 -17.88015 -17.24352 -16.81236 -16.65606 -16.30416 -16.01174 -15.75645 -15.39142 -14.95557 -14.65621 -14.51381 -14.45099 -14.34360 -14.13042 -13.90677 -13.70490 -13.26677 -13.07299 -12.95410 -12.88345 -12.80320 -12.54810 -12.37131 -12.07303 -11.90236 -11.84525 -11.71217 -11.60364 -11.48329 -11.33712 -10.81318 -10.69207 -10.08302 -9.84067 -8.90478 -8.22869 -6.27311 0.36814 0.50515 1.18857 1.37429 1.41775 1.50454 1.67751 1.81029 2.21674 2.36974 2.78117 2.89819 3.09579 3.55243 3.69265 3.73122 3.96740 3.99782 4.05433 4.12428 4.22731 4.28953 4.29923 4.48511 4.51932 4.56811 4.60771 4.69441 4.76912 4.78629 4.83512 4.89719 4.90105 5.03177 5.14800 5.18124 5.41380 5.45958 5.48509 5.60909 5.69027 5.83497 6.18662 6.32367 6.61521 6.79328 6.92459 7.29808 7.41175 8.92886 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010202 B = 0.006263 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.978874 B = 4469.791063 C = 5593.954313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.363 6.363 3 C 0.480 3.520 4 O -0.512 6.512 5 C -0.139 4.139 6 H 0.162 0.838 7 C -0.090 4.090 8 C -0.164 4.164 9 H 0.167 0.833 10 C 0.559 3.441 11 O -0.580 6.580 12 N -0.548 5.548 13 C 0.219 3.781 14 C -0.526 4.526 15 H 0.037 0.963 16 C 0.021 3.979 17 N -0.940 5.940 18 Si 0.932 3.068 19 H -0.254 1.254 20 H -0.290 1.290 21 H -0.243 1.243 22 C 0.133 3.867 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.102 4.102 26 C -0.103 4.103 27 C -0.108 4.108 28 C -0.139 4.139 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.135 0.865 32 H 0.169 0.831 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.159 0.841 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 5.727 6.783 10.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.280 6.280 3 C 0.324 3.676 4 O -0.399 6.399 5 C -0.158 4.158 6 H 0.180 0.820 7 C -0.127 4.127 8 C -0.185 4.185 9 H 0.184 0.816 10 C 0.350 3.650 11 O -0.460 6.460 12 N -0.273 5.273 13 C 0.098 3.902 14 C -0.565 4.565 15 H 0.055 0.945 16 C -0.177 4.177 17 N -0.580 5.580 18 Si 0.755 3.245 19 H -0.179 1.179 20 H -0.217 1.217 21 H -0.167 1.167 22 C 0.042 3.958 23 C -0.143 4.143 24 C -0.141 4.141 25 C -0.102 4.102 26 C -0.160 4.160 27 C -0.126 4.126 28 C -0.159 4.159 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.153 0.847 32 H 0.186 0.814 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.151 0.849 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.176 0.824 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.571 6.082 7.191 10.468 hybrid contribution -0.480 -0.632 -1.035 1.304 sum 4.090 5.450 6.156 9.183 Atomic orbital electron populations 1.23300 0.75666 1.05083 1.01076 1.86382 1.24233 1.33014 1.84345 1.22996 0.91685 0.81205 0.71710 1.90676 1.67259 1.36872 1.45089 1.21773 0.87515 0.99257 1.07230 0.82023 1.23294 1.03560 0.96765 0.89080 1.22404 1.01198 0.88420 1.06445 0.81573 1.19752 0.79955 0.82846 0.82437 1.90565 1.57922 1.65882 1.31677 1.45349 1.49363 1.24919 1.07625 1.19758 0.95861 0.93828 0.80748 1.21485 1.06568 1.20693 1.07726 0.94485 1.25690 0.99399 0.94064 0.98579 1.70068 1.39760 1.23379 1.24748 0.85920 0.79913 0.80697 0.77937 1.17860 1.21664 1.16676 1.17951 0.90989 0.87165 0.99686 1.21182 0.93851 0.98526 1.00712 1.21099 0.99898 0.92200 1.00871 1.20280 0.96007 0.96224 0.97722 1.20779 0.98890 0.93252 1.03058 1.21189 0.93863 0.98125 0.99453 1.21331 1.01149 0.91656 1.01760 0.92020 0.94815 0.84714 0.81359 0.89083 0.92589 0.94486 0.92648 0.89402 0.84913 0.90373 0.90946 0.89686 0.82377 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 10.56 113.37 1.20 2.67 16 2 O -0.36 -14.52 10.57 -51.40 -0.54 -15.07 16 3 C 0.48 20.78 7.25 71.24 0.52 21.29 16 4 O -0.51 -25.85 11.43 26.98 0.31 -25.54 16 5 C -0.14 -4.71 6.30 -11.54 -0.07 -4.78 16 6 H 0.16 4.70 8.14 -2.39 -0.02 4.68 16 7 C -0.09 -2.39 9.74 30.60 0.30 -2.10 16 8 C -0.16 -5.56 4.72 -11.54 -0.05 -5.61 16 9 H 0.17 4.44 7.38 -2.39 -0.02 4.42 16 10 C 0.56 24.52 4.57 87.66 0.40 24.92 16 11 O -0.58 -28.45 15.28 10.53 0.16 -28.29 16 12 N -0.55 -24.82 2.48 -635.29 -1.57 -26.39 16 13 C 0.22 9.94 4.02 85.64 0.34 10.28 16 14 C -0.53 -28.88 9.36 25.60 0.24 -28.64 16 15 H 0.04 2.41 6.38 -2.91 -0.02 2.39 16 16 C 0.02 1.15 5.47 84.66 0.46 1.61 16 17 N -0.94 -56.06 13.96 21.45 0.30 -55.76 16 18 Si 0.93 39.99 27.54 68.60 1.89 41.88 16 19 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 20 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.24 -9.53 6.44 99.48 0.64 -8.89 16 22 C 0.13 5.93 5.17 38.16 0.20 6.13 16 23 C -0.12 -5.57 8.89 22.39 0.20 -5.37 16 24 C -0.12 -4.42 9.69 22.25 0.22 -4.20 16 25 C -0.10 -3.04 5.88 -19.84 -0.12 -3.16 16 26 C -0.10 -2.07 10.01 71.24 0.71 -1.35 16 27 C -0.11 -3.22 9.69 22.25 0.22 -3.00 16 28 C -0.14 -5.07 9.34 22.39 0.21 -4.86 16 29 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 30 H 0.03 1.39 8.13 -2.39 -0.02 1.37 16 31 H 0.13 3.46 8.14 -2.38 -0.02 3.44 16 32 H 0.17 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.09 2.80 7.79 -2.39 -0.02 2.78 16 34 H 0.06 2.25 5.88 -2.39 -0.01 2.24 16 35 H 0.04 1.65 6.41 -2.39 -0.02 1.63 16 36 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 37 H 0.09 4.60 7.52 -2.91 -0.02 4.58 16 38 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.32 8.08 -2.38 -0.02 1.30 16 41 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 42 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.13 4.33 7.92 -2.91 -0.02 4.31 16 Total: -1.00 -80.04 361.29 6.46 -73.58 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.95 Total: 31.76 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 4.96 Total: 3.82 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -1.28 Total: -82.15 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -0.07 Total: -68.90 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.89 Total: 41.88 kcal Total: -80.04 6.46 -73.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171402066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.513 kcal (2) G-P(sol) polarization free energy of solvation -80.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds