Wall clock time and date at job start Tue Mar 31 2020 11:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.49823 * 2 1 4 4 O 1.21282 * 120.00658 * 265.07336 * 3 2 1 5 5 N 1.34778 * 119.99831 * 85.07778 * 3 2 1 6 6 C 1.46506 * 119.99944 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.46957 * 179.97438 * 6 5 3 8 8 C 1.53008 * 109.46812 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46847 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00138 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99722 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00073 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46845 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47399 * 119.99815 * 13 11 9 16 16 H 1.48498 * 109.47295 * 240.00422 * 13 11 9 17 17 C 1.52908 * 109.53269 * 239.90853 * 2 1 3 18 18 C 1.50590 * 110.32550 * 289.89665 * 17 2 1 19 19 C 1.38089 * 119.91272 * 158.92978 * 18 17 2 20 20 C 1.38321 * 120.14097 * 179.75545 * 19 18 17 21 21 C 1.38394 * 120.47118 * 0.03847 * 20 19 18 22 22 C 1.38019 * 120.04221 * 0.02562 * 21 20 19 23 23 C 1.39407 * 119.65922 * 0.02562 * 22 21 20 24 24 C 1.48129 * 120.39177 * 179.85896 * 23 22 21 25 25 O 1.21472 * 121.44624 * 350.42392 * 24 23 22 26 26 O 1.35752 * 117.10536 * 170.44381 * 24 23 22 27 27 H 1.08997 * 109.47206 * 59.99826 * 1 2 3 28 28 H 1.08999 * 109.47096 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47282 * 299.99922 * 1 2 3 30 30 H 0.96998 * 120.00160 * 359.97438 * 5 3 2 31 31 H 1.09000 * 109.46635 * 60.00027 * 6 5 3 32 32 H 1.08994 * 109.47340 * 300.00185 * 6 5 3 33 33 H 1.09000 * 109.47115 * 60.00701 * 7 6 5 34 34 H 1.08994 * 109.47558 * 300.00433 * 7 6 5 35 35 H 1.08996 * 109.46961 * 60.00901 * 8 7 6 36 36 H 1.08994 * 109.47402 * 300.00515 * 8 7 6 37 37 H 0.97000 * 119.99651 * 0.02562 * 12 11 9 38 38 H 1.09001 * 109.32815 * 50.15795 * 17 2 1 39 39 H 1.09002 * 109.32877 * 169.63523 * 17 2 1 40 40 H 1.07997 * 119.92691 * 359.78091 * 19 18 17 41 41 H 1.07995 * 119.76396 * 180.02562 * 20 19 18 42 42 H 1.07995 * 119.97818 * 180.02562 * 21 20 19 43 43 H 1.07995 * 120.17302 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4205 0.0000 4 8 2.3205 1.9622 -1.0464 5 7 2.1635 2.0892 1.1629 6 6 2.6531 3.4700 1.1630 7 6 2.7059 3.9923 2.6001 8 6 3.2165 5.4346 2.6001 9 6 3.2691 5.9488 4.0157 10 1 2.9688 5.3106 4.8337 11 6 3.7006 7.2340 4.2667 12 7 4.0658 8.0114 3.2707 13 14 3.7652 7.8717 6.0213 14 1 3.3049 6.8094 6.9513 15 1 5.1602 8.2535 6.3583 16 1 2.8824 9.0589 6.1493 17 6 2.0413 -0.7225 -1.2469 18 6 1.7632 -2.1991 -1.1467 19 6 1.7294 -2.9726 -2.2901 20 6 1.4794 -4.3303 -2.2031 21 6 1.2605 -4.9262 -0.9733 22 6 1.2899 -4.1657 0.1780 23 6 1.5405 -2.7968 0.0944 24 6 1.5727 -1.9647 1.3195 25 8 1.2176 -2.4052 2.3943 26 8 2.0159 -0.6882 1.1886 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.9334 1.6562 1.9998 31 1 1.9804 4.0939 0.5745 32 1 3.6518 3.5015 0.7277 33 1 3.3783 3.3684 3.1889 34 1 1.7070 3.9609 3.0351 35 1 2.5437 6.0582 2.0115 36 1 4.2153 5.4665 2.1650 37 1 4.0312 7.6806 2.3595 38 1 1.5408 -0.3202 -2.1276 39 1 3.1155 -0.5633 -1.3411 40 1 1.8988 -2.5166 -3.2543 41 1 1.4547 -4.9295 -3.1012 42 1 1.0665 -5.9869 -0.9146 43 1 1.1198 -4.6285 1.1388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171507021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:43 Heat of formation + Delta-G solvation = -110.341910 kcal Electronic energy + Delta-G solvation = -25859.570522 eV Core-core repulsion = 22062.032923 eV Total energy + Delta-G solvation = -3797.537599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78516 -39.79586 -38.86901 -37.63522 -35.74051 -33.92704 -33.62332 -31.83079 -31.71950 -30.89302 -27.72085 -26.72575 -24.78433 -24.43145 -22.85325 -22.32763 -21.12373 -20.83926 -19.44613 -18.68845 -17.70786 -17.02344 -16.82199 -16.37467 -15.74993 -15.71702 -15.48758 -15.20329 -14.93177 -14.63568 -14.31328 -14.06346 -13.74388 -13.49009 -13.43398 -13.15222 -12.96242 -12.76720 -12.62725 -12.22508 -12.19370 -11.92042 -11.67792 -11.64872 -11.19412 -10.94039 -10.78287 -10.72772 -10.18194 -10.11067 -10.03434 -9.72904 -9.59239 -9.32072 -8.99609 -8.57754 -8.33426 -6.37311 -4.06973 0.12430 0.75627 1.72402 2.22532 2.76818 2.96769 3.17291 3.44187 3.48121 3.61443 3.68304 3.87148 4.04824 4.20982 4.32190 4.43950 4.53515 4.55590 4.74171 4.86759 4.99898 5.06984 5.10239 5.15742 5.35753 5.39854 5.45030 5.52688 5.56404 5.61618 5.69990 5.77196 5.86179 5.99137 6.24177 6.27638 6.43353 6.44873 6.64651 6.81328 7.02051 7.34247 7.44393 7.46528 8.03362 8.18525 8.45520 8.87209 9.65457 11.03584 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028705 B = 0.002335 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.196524 B =11989.078394 C =12677.422192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 C 0.531 3.469 4 O -0.527 6.527 5 N -0.706 5.706 6 C 0.113 3.887 7 C -0.115 4.115 8 C 0.011 3.989 9 C -0.603 4.603 10 H 0.050 0.950 11 C 0.014 3.986 12 N -0.913 5.913 13 Si 1.075 2.925 14 H -0.289 1.289 15 H -0.287 1.287 16 H -0.287 1.287 17 C -0.097 4.097 18 C -0.032 4.032 19 C -0.126 4.126 20 C -0.079 4.079 21 C -0.135 4.135 22 C -0.049 4.049 23 C -0.177 4.177 24 C 0.532 3.468 25 O -0.443 6.443 26 O -0.348 6.348 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.407 0.593 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.010 0.990 36 H 0.010 0.990 37 H 0.270 0.730 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 -27.160 -12.895 31.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.072 3.928 3 C 0.314 3.686 4 O -0.405 6.405 5 N -0.356 5.356 6 C -0.009 4.009 7 C -0.153 4.153 8 C -0.027 4.027 9 C -0.641 4.641 10 H 0.069 0.931 11 C -0.190 4.190 12 N -0.550 5.550 13 Si 0.903 3.097 14 H -0.215 1.215 15 H -0.213 1.213 16 H -0.213 1.213 17 C -0.134 4.134 18 C -0.032 4.032 19 C -0.144 4.144 20 C -0.097 4.097 21 C -0.153 4.153 22 C -0.067 4.067 23 C -0.179 4.179 24 C 0.374 3.626 25 O -0.325 6.325 26 O -0.268 6.268 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.242 0.758 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.029 0.971 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.438 -25.519 -12.046 29.183 hybrid contribution -0.473 -1.698 -0.636 1.874 sum -7.912 -27.217 -12.681 31.051 Atomic orbital electron populations 1.22492 0.91252 1.04404 1.05444 1.22519 0.96091 0.90526 0.83655 1.19549 0.78442 0.85861 0.84788 1.90768 1.49831 1.68526 1.31346 1.46208 1.64942 1.15626 1.08802 1.21764 0.99482 0.79575 1.00086 1.21770 1.01414 0.99903 0.92236 1.19164 0.95586 0.89830 0.98096 1.22074 1.48644 1.01019 0.92369 0.93147 1.25871 0.93578 0.93746 1.05815 1.70725 1.44812 1.38785 1.00648 0.83465 0.76774 0.75447 0.73990 1.21519 1.21324 1.21330 1.20985 1.04630 0.90015 0.97816 1.19968 0.95327 0.95330 0.92579 1.21048 1.01353 0.93944 0.98049 1.21440 0.95456 0.94697 0.98154 1.21225 1.01459 1.00490 0.92105 1.21283 0.93916 0.91759 0.99742 1.20076 1.09248 0.95340 0.93192 1.20871 0.72524 0.81076 0.88148 1.90831 1.38220 1.72964 1.30445 1.87044 1.67602 1.26924 1.45239 0.88892 0.90603 0.89969 0.75764 0.91411 0.91423 0.92309 0.92400 0.97157 0.97143 0.91996 0.86794 0.87611 0.84683 0.85059 0.84879 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.19 37.16 0.30 -1.29 16 2 C 0.11 1.22 1.05 -91.82 -0.10 1.13 16 3 C 0.53 7.41 6.71 -10.99 -0.07 7.33 16 4 O -0.53 -8.69 16.27 5.56 0.09 -8.60 16 5 N -0.71 -10.28 5.47 -60.30 -0.33 -10.61 16 6 C 0.11 1.95 5.67 -4.04 -0.02 1.92 16 7 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 8 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 9 C -0.60 -17.16 9.11 -34.44 -0.31 -17.47 16 10 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 11 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 12 N -0.91 -28.14 13.65 55.43 0.76 -27.39 16 13 Si 1.07 25.54 29.90 -169.99 -5.08 20.45 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 C -0.10 -0.88 4.17 -27.98 -0.12 -0.99 16 18 C -0.03 -0.26 5.33 -104.24 -0.56 -0.82 16 19 C -0.13 -0.79 9.71 -39.61 -0.38 -1.17 16 20 C -0.08 -0.42 10.03 -39.49 -0.40 -0.82 16 21 C -0.13 -0.78 10.04 -39.60 -0.40 -1.18 16 22 C -0.05 -0.39 9.64 -39.23 -0.38 -0.77 16 23 C -0.18 -1.71 5.17 -104.92 -0.54 -2.26 16 24 C 0.53 6.53 6.73 34.79 0.23 6.76 16 25 O -0.44 -6.46 17.40 -19.08 -0.33 -6.79 16 26 O -0.35 -4.37 9.50 -43.44 -0.41 -4.78 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.63 6.45 -51.93 -0.34 0.29 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.41 5.41 7.91 -40.82 -0.32 5.09 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 36 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 37 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 38 H 0.11 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.11 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 43 H 0.14 1.03 7.77 -52.49 -0.41 0.63 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -34.08 362.40 -8.99 -43.07 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.04 Total: 0.78 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -3.10 Total: -11.59 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.43 Total: -38.00 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.65 Total: -20.17 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.08 -8.99 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171507021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.276 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds