Wall clock time and date at job start Tue Mar 31 2020 11:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.49823 * 2 1 4 4 O 1.21282 * 120.00658 * 265.07336 * 3 2 1 5 5 N 1.34778 * 119.99831 * 85.07778 * 3 2 1 6 6 C 1.46506 * 119.99944 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.46957 * 179.97438 * 6 5 3 8 8 C 1.53008 * 109.46812 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46847 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00138 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99722 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00073 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46845 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47399 * 119.99815 * 13 11 9 16 16 H 1.48498 * 109.47295 * 240.00422 * 13 11 9 17 17 C 1.52908 * 109.53269 * 239.90853 * 2 1 3 18 18 C 1.50590 * 110.32550 * 289.89665 * 17 2 1 19 19 C 1.38089 * 119.91272 * 158.92978 * 18 17 2 20 20 C 1.38321 * 120.14097 * 179.75545 * 19 18 17 21 21 C 1.38394 * 120.47118 * 0.03847 * 20 19 18 22 22 C 1.38019 * 120.04221 * 0.02562 * 21 20 19 23 23 C 1.39407 * 119.65922 * 0.02562 * 22 21 20 24 24 C 1.48129 * 120.39177 * 179.85896 * 23 22 21 25 25 O 1.21472 * 121.44624 * 350.42392 * 24 23 22 26 26 O 1.35752 * 117.10536 * 170.44381 * 24 23 22 27 27 H 1.08997 * 109.47206 * 59.99826 * 1 2 3 28 28 H 1.08999 * 109.47096 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47282 * 299.99922 * 1 2 3 30 30 H 0.96998 * 120.00160 * 359.97438 * 5 3 2 31 31 H 1.09000 * 109.46635 * 60.00027 * 6 5 3 32 32 H 1.08994 * 109.47340 * 300.00185 * 6 5 3 33 33 H 1.09000 * 109.47115 * 60.00701 * 7 6 5 34 34 H 1.08994 * 109.47558 * 300.00433 * 7 6 5 35 35 H 1.08996 * 109.46961 * 60.00901 * 8 7 6 36 36 H 1.08994 * 109.47402 * 300.00515 * 8 7 6 37 37 H 0.97000 * 119.99651 * 0.02562 * 12 11 9 38 38 H 1.09001 * 109.32815 * 50.15795 * 17 2 1 39 39 H 1.09002 * 109.32877 * 169.63523 * 17 2 1 40 40 H 1.07997 * 119.92691 * 359.78091 * 19 18 17 41 41 H 1.07995 * 119.76396 * 180.02562 * 20 19 18 42 42 H 1.07995 * 119.97818 * 180.02562 * 21 20 19 43 43 H 1.07995 * 120.17302 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4205 0.0000 4 8 2.3205 1.9622 -1.0464 5 7 2.1635 2.0892 1.1629 6 6 2.6531 3.4700 1.1630 7 6 2.7059 3.9923 2.6001 8 6 3.2165 5.4346 2.6001 9 6 3.2691 5.9488 4.0157 10 1 2.9688 5.3106 4.8337 11 6 3.7006 7.2340 4.2667 12 7 4.0658 8.0114 3.2707 13 14 3.7652 7.8717 6.0213 14 1 3.3049 6.8094 6.9513 15 1 5.1602 8.2535 6.3583 16 1 2.8824 9.0589 6.1493 17 6 2.0413 -0.7225 -1.2469 18 6 1.7632 -2.1991 -1.1467 19 6 1.7294 -2.9726 -2.2901 20 6 1.4794 -4.3303 -2.2031 21 6 1.2605 -4.9262 -0.9733 22 6 1.2899 -4.1657 0.1780 23 6 1.5405 -2.7968 0.0944 24 6 1.5727 -1.9647 1.3195 25 8 1.2176 -2.4052 2.3943 26 8 2.0159 -0.6882 1.1886 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.9334 1.6562 1.9998 31 1 1.9804 4.0939 0.5745 32 1 3.6518 3.5015 0.7277 33 1 3.3783 3.3684 3.1889 34 1 1.7070 3.9609 3.0351 35 1 2.5437 6.0582 2.0115 36 1 4.2153 5.4665 2.1650 37 1 4.0312 7.6806 2.3595 38 1 1.5408 -0.3202 -2.1276 39 1 3.1155 -0.5633 -1.3411 40 1 1.8988 -2.5166 -3.2543 41 1 1.4547 -4.9295 -3.1012 42 1 1.0665 -5.9869 -0.9146 43 1 1.1198 -4.6285 1.1388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171507021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:42 Heat of formation + Delta-G solvation = -130.989031 kcal Electronic energy + Delta-G solvation = -25860.465848 eV Core-core repulsion = 22062.032923 eV Total energy + Delta-G solvation = -3798.432925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.63160 -40.87147 -39.55236 -38.62209 -37.28104 -35.55716 -34.65698 -33.15534 -32.27965 -32.08791 -28.47410 -28.36419 -25.87959 -25.31321 -24.48383 -22.95759 -22.60164 -22.12493 -20.23567 -19.65267 -18.96916 -18.59291 -17.85912 -17.19108 -16.97018 -16.77936 -16.35546 -16.21385 -15.67660 -15.59499 -15.50828 -15.45415 -15.09012 -14.85120 -14.51224 -14.12701 -13.87255 -13.65188 -13.62011 -13.51424 -13.28398 -12.93996 -12.82296 -12.65078 -12.63444 -12.18008 -12.15405 -12.01804 -11.89863 -11.84668 -11.60002 -11.00107 -10.68452 -10.56170 -10.30791 -10.13050 -9.84619 -8.70292 -6.41074 -0.53461 0.25603 0.86727 1.23771 1.52365 1.61883 1.77268 1.78753 1.91123 2.55792 2.61590 2.93048 3.08623 3.14746 3.27919 3.39024 3.64394 3.79682 3.97425 4.05166 4.11644 4.28040 4.29513 4.34517 4.37410 4.38148 4.49217 4.57321 4.74365 4.75495 4.79163 4.85325 4.92043 4.93873 5.15749 5.19623 5.28455 5.35264 5.40103 5.44546 5.59454 5.82307 5.96407 6.13410 6.17066 6.26478 6.56107 6.86906 7.40831 8.70907 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028705 B = 0.002335 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.196524 B =11989.078394 C =12677.422192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.117 3.883 3 C 0.532 3.468 4 O -0.552 6.552 5 N -0.704 5.704 6 C 0.128 3.872 7 C -0.099 4.099 8 C 0.009 3.991 9 C -0.618 4.618 10 H 0.053 0.947 11 C -0.042 4.042 12 N -0.939 5.939 13 Si 1.123 2.877 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.278 1.278 17 C -0.094 4.094 18 C -0.038 4.038 19 C -0.125 4.125 20 C -0.069 4.069 21 C -0.130 4.130 22 C -0.060 4.060 23 C -0.198 4.198 24 C 0.532 3.468 25 O -0.480 6.480 26 O -0.367 6.367 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.414 0.586 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.066 0.934 35 H -0.006 1.006 36 H -0.008 1.008 37 H 0.256 0.744 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 -29.434 -13.885 33.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.077 3.923 3 C 0.317 3.683 4 O -0.431 6.431 5 N -0.355 5.355 6 C 0.005 3.995 7 C -0.137 4.137 8 C -0.029 4.029 9 C -0.656 4.656 10 H 0.071 0.929 11 C -0.239 4.239 12 N -0.576 5.576 13 Si 0.945 3.055 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.204 1.204 17 C -0.131 4.131 18 C -0.038 4.038 19 C -0.142 4.142 20 C -0.086 4.086 21 C -0.148 4.148 22 C -0.078 4.078 23 C -0.200 4.200 24 C 0.377 3.623 25 O -0.364 6.364 26 O -0.288 6.288 27 H 0.126 0.874 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.251 0.749 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.013 0.987 36 H 0.010 0.990 37 H 0.066 0.934 38 H 0.149 0.851 39 H 0.115 0.885 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.178 0.822 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.289 -27.825 -13.055 31.834 hybrid contribution -0.199 -1.065 -0.417 1.161 sum -8.488 -28.890 -13.472 32.988 Atomic orbital electron populations 1.22514 0.89604 1.05177 1.06007 1.22528 0.97193 0.88440 0.84126 1.20020 0.77479 0.86943 0.83906 1.90752 1.50772 1.69490 1.32069 1.46074 1.65105 1.14615 1.09692 1.21360 0.99087 0.81080 0.98015 1.21504 1.01515 0.96583 0.94122 1.19108 0.94441 0.92955 0.96350 1.22519 1.47976 1.01316 0.93797 0.92858 1.27469 0.92696 0.94519 1.09208 1.70861 1.46833 1.39398 1.00536 0.82855 0.77386 0.75773 0.69526 1.19378 1.20480 1.20362 1.20984 1.04235 0.90690 0.97169 1.19928 0.96154 0.94880 0.92847 1.21366 1.00325 0.94401 0.98144 1.21880 0.93124 0.94501 0.99129 1.21572 1.00106 1.01663 0.91453 1.21421 0.94333 0.91332 1.00755 1.19972 1.11844 0.95796 0.92342 1.21304 0.71381 0.80940 0.88703 1.90798 1.40277 1.73400 1.31974 1.86971 1.67855 1.27710 1.46229 0.87374 0.89695 0.90375 0.74942 0.91794 0.92375 0.91984 0.91551 0.98726 0.98984 0.93417 0.85139 0.88469 0.82354 0.81682 0.82195 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.19 71.98 0.59 -2.39 16 2 C 0.12 2.49 1.05 -11.57 -0.01 2.48 16 3 C 0.53 14.75 6.71 87.66 0.59 15.33 16 4 O -0.55 -18.07 16.27 -3.03 -0.05 -18.12 16 5 N -0.70 -20.53 5.47 -463.06 -2.53 -23.06 16 6 C 0.13 4.46 5.67 86.38 0.49 4.95 16 7 C -0.10 -3.97 5.27 30.60 0.16 -3.80 16 8 C 0.01 0.47 4.28 29.85 0.13 0.60 16 9 C -0.62 -35.50 9.11 25.60 0.23 -35.26 16 10 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 11 C -0.04 -2.44 5.46 84.65 0.46 -1.98 16 12 N -0.94 -58.93 13.65 21.45 0.29 -58.64 16 13 Si 1.12 50.90 29.90 68.60 2.05 52.95 16 14 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 17 C -0.09 -1.57 4.17 29.78 0.12 -1.45 16 18 C -0.04 -0.56 5.33 -19.62 -0.10 -0.66 16 19 C -0.12 -1.13 9.71 22.25 0.22 -0.92 16 20 C -0.07 -0.44 10.03 22.33 0.22 -0.21 16 21 C -0.13 -1.10 10.04 22.25 0.22 -0.88 16 22 C -0.06 -0.89 9.64 22.50 0.22 -0.67 16 23 C -0.20 -3.68 5.17 -20.05 -0.10 -3.79 16 24 C 0.53 13.32 6.73 70.45 0.47 13.79 16 25 O -0.48 -14.55 17.40 19.77 0.34 -14.21 16 26 O -0.37 -9.35 9.50 -67.37 -0.64 -9.99 16 27 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.31 6.45 -2.39 -0.02 1.30 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.41 10.99 7.91 -92.71 -0.73 10.26 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 35 H -0.01 -0.30 8.01 -2.39 -0.02 -0.32 16 36 H -0.01 -0.45 8.01 -2.39 -0.02 -0.47 16 37 H 0.26 16.27 7.22 -92.71 -0.67 15.60 16 38 H 0.13 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 40 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 41 H 0.17 -0.01 8.06 -2.91 -0.02 -0.04 16 42 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 43 H 0.14 1.99 7.77 -2.91 -0.02 1.97 16 Total: -1.00 -75.23 362.40 3.77 -71.46 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.39 Total: 14.48 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 3.91 Total: -14.87 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -2.24 Total: -81.70 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.35 Total: -42.32 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.05 Total: 52.95 kcal Total: -75.23 3.77 -71.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171507021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.525 kcal (2) G-P(sol) polarization free energy of solvation -75.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds