Wall clock time and date at job start Tue Mar 31 2020 11:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48508 * 109.47025 * 239.99489 * 3 2 1 5 5 H 1.48501 * 109.47522 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47205 * 119.99879 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99786 * 197.84555 * 7 2 1 9 9 C 1.41441 * 120.00330 * 17.85009 * 7 2 1 10 10 C 1.40789 * 120.17489 * 204.37574 * 9 7 2 11 11 C 1.37715 * 120.04900 * 179.97438 * 10 9 7 12 12 C 1.38360 * 120.42165 * 0.03954 * 11 10 9 13 13 C 1.39932 * 120.35031 * 359.97438 * 12 11 10 14 14 C 1.47764 * 120.03017 * 180.02562 * 13 12 11 15 15 O 1.21459 * 120.00089 * 179.97438 * 14 13 12 16 16 O 1.34710 * 120.00105 * 359.97438 * 14 13 12 17 17 C 1.45194 * 117.00209 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.47283 * 180.02562 * 17 16 14 19 19 N 1.46499 * 109.47364 * 64.99946 * 18 17 16 20 20 C 1.45753 * 117.94543 * 269.73988 * 19 18 17 21 21 C 1.53099 * 110.38964 * 160.74379 * 20 19 18 22 22 C 1.53346 * 108.52661 * 51.11274 * 21 20 19 23 23 C 1.53073 * 108.42714 * 292.31257 * 22 21 20 24 24 C 1.33351 * 117.94901 * 90.00417 * 19 18 17 25 25 O 1.21284 * 118.24598 * 2.24177 * 24 19 18 26 26 C 1.39088 * 119.93522 * 359.97438 * 13 12 11 27 27 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.97749 * 0.03619 * 10 9 7 29 29 H 1.07998 * 119.78976 * 180.02562 * 11 10 9 30 30 H 1.07997 * 119.82473 * 179.97438 * 12 11 10 31 31 H 1.09009 * 109.47249 * 299.99776 * 17 16 14 32 32 H 1.08996 * 109.47212 * 59.99470 * 17 16 14 33 33 H 1.09005 * 109.47129 * 184.99880 * 18 17 16 34 34 H 1.09003 * 109.47000 * 304.99365 * 18 17 16 35 35 H 1.09006 * 109.30146 * 281.23533 * 20 19 18 36 36 H 1.09004 * 109.30010 * 40.60742 * 20 19 18 37 37 H 1.09000 * 109.80539 * 291.32933 * 21 20 19 38 38 H 1.09001 * 109.68179 * 170.82520 * 21 20 19 39 39 H 1.09010 * 109.67372 * 172.57607 * 22 21 20 40 40 H 1.08999 * 109.67411 * 52.04882 * 22 21 20 41 41 H 1.08996 * 109.39799 * 288.77284 * 23 22 21 42 42 H 1.09000 * 109.33012 * 168.98890 * 23 22 21 43 43 H 1.08004 * 120.19894 * 179.72031 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3517 -2.4075 -0.3744 10 6 1.8271 -3.6500 0.0864 11 6 1.1859 -4.8125 -0.2798 12 6 0.0735 -4.7701 -1.1015 13 6 -0.4134 -3.5446 -1.5696 14 6 -1.6023 -3.5075 -2.4463 15 8 -2.0248 -2.4434 -2.8519 16 8 -2.2176 -4.6538 -2.7956 17 6 -3.3798 -4.5416 -3.6587 18 6 -3.9396 -5.9365 -3.9443 19 7 -4.4369 -6.5274 -2.6994 20 6 -3.5095 -7.3189 -1.9008 21 6 -4.0193 -7.4475 -0.4629 22 6 -5.4743 -7.9300 -0.5031 23 6 -6.3369 -6.8165 -1.1022 24 6 -5.7112 -6.3119 -2.3707 25 8 -6.4019 -5.6746 -3.1374 26 6 0.2221 -2.3614 -1.2080 27 1 -0.4850 0.8400 -0.0004 28 1 2.6946 -3.6916 0.7284 29 1 1.5539 -5.7633 0.0764 30 1 -0.4216 -5.6877 -1.3830 31 1 -4.1422 -3.9386 -3.1651 32 1 -3.0916 -4.0663 -4.5963 33 1 -4.7564 -5.8602 -4.6620 34 1 -3.1516 -6.5668 -4.3563 35 1 -3.4102 -8.3108 -2.3416 36 1 -2.5343 -6.8320 -1.8933 37 1 -3.9688 -6.4791 0.0349 38 1 -3.4093 -8.1699 0.0796 39 1 -5.8146 -8.1543 0.5079 40 1 -5.5474 -8.8242 -1.1221 41 1 -6.4181 -5.9973 -0.3878 42 1 -7.3310 -7.2074 -1.3193 43 1 -0.1474 -1.4135 -1.5705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171660799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:48 Heat of formation + Delta-G solvation = -114.537208 kcal Electronic energy + Delta-G solvation = -26415.595858 eV Core-core repulsion = 22617.876337 eV Total energy + Delta-G solvation = -3797.719521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65495 -39.64821 -37.44255 -36.57563 -35.91169 -34.32130 -33.78642 -30.64117 -29.91689 -29.57306 -29.23602 -25.46781 -24.88093 -23.86886 -22.89497 -21.62420 -21.02657 -19.85488 -18.73827 -17.89804 -16.96500 -16.74570 -16.22919 -16.15129 -15.64279 -15.55859 -14.95851 -14.70078 -14.38893 -14.33518 -13.79629 -13.56047 -13.34240 -13.29833 -12.84700 -12.65365 -12.56611 -12.35006 -11.95063 -11.72016 -11.66192 -11.31484 -11.22535 -11.15989 -11.13242 -11.10573 -10.81239 -10.57020 -10.29249 -10.22973 -9.78601 -9.69441 -9.52646 -9.27410 -8.79470 -7.79149 -7.61034 -6.87070 -4.48437 1.94990 2.55368 2.74688 2.87906 3.03871 3.05501 3.11407 3.23500 3.57691 3.86885 4.40753 4.53696 4.56692 4.58840 4.63475 4.91623 5.05370 5.18977 5.25490 5.33642 5.39646 5.48135 5.50069 5.54518 5.60602 5.68961 5.72933 5.79224 5.88724 6.03656 6.08677 6.30518 6.34874 6.59286 6.88260 6.90763 6.96758 7.12546 7.25950 7.38273 7.62892 7.70186 7.86172 8.05739 8.07338 8.39507 8.53568 8.72455 8.74220 10.08053 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.003189 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.613885 B = 8777.063564 C = 9303.138389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.097 3.903 10 C -0.203 4.203 11 C -0.103 4.103 12 C -0.195 4.195 13 C -0.114 4.114 14 C 0.510 3.490 15 O -0.517 6.517 16 O -0.356 6.356 17 C 0.051 3.949 18 C 0.112 3.888 19 N -0.596 5.596 20 C 0.110 3.890 21 C -0.138 4.138 22 C -0.123 4.123 23 C -0.134 4.134 24 C 0.515 3.485 25 O -0.560 6.560 26 C -0.090 4.090 27 H 0.286 0.714 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.007 -14.130 -1.809 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.094 3.906 10 C -0.223 4.223 11 C -0.121 4.121 12 C -0.215 4.215 13 C -0.115 4.115 14 C 0.357 3.643 15 O -0.406 6.406 16 O -0.273 6.273 17 C -0.025 4.025 18 C -0.011 4.011 19 N -0.328 5.328 20 C -0.013 4.013 21 C -0.175 4.175 22 C -0.161 4.161 23 C -0.174 4.174 24 C 0.304 3.696 25 O -0.440 6.440 26 C -0.110 4.110 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.741 -13.340 -2.305 15.595 hybrid contribution 0.262 0.892 0.053 0.931 sum -7.479 -12.448 -2.252 14.695 Atomic orbital electron populations 1.69767 1.07628 1.30011 1.33558 1.25970 0.94776 1.01628 0.92214 0.86304 0.80107 0.79982 0.80038 1.18679 1.20193 1.18891 1.19557 0.98276 0.90976 1.40080 0.89945 1.17531 0.91083 0.92600 0.89367 1.21172 1.03232 0.92726 1.05168 1.20491 0.96113 0.96859 0.98627 1.20493 1.00288 0.95108 1.05631 1.18834 0.94849 0.95897 1.01904 1.21890 0.83075 0.80998 0.78333 1.90770 1.65150 1.31290 1.53433 1.86551 1.41749 1.36101 1.62940 1.23354 0.86623 0.98031 0.94469 1.21634 0.99597 0.92735 0.87152 1.47289 1.10439 1.51461 1.23623 1.21581 0.93896 0.95082 0.90709 1.21920 0.96316 1.03216 0.96083 1.21673 0.94938 0.97723 1.01750 1.21653 1.00319 1.00323 0.95095 1.20211 0.81427 0.79719 0.88242 1.90708 1.60496 1.41539 1.51235 1.21656 0.96538 0.96063 0.96722 0.90296 0.88382 0.88590 0.88086 0.91182 0.90537 0.87533 0.89288 0.91835 0.88855 0.90519 0.89593 0.90588 0.91258 0.88222 0.88395 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.46 10.95 55.55 0.61 -19.85 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.79 9.05 -37.73 -0.34 -12.13 16 8 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 9 C 0.10 2.49 5.57 -106.87 -0.60 1.89 16 10 C -0.20 -4.65 9.78 -38.81 -0.38 -5.03 16 11 C -0.10 -2.11 10.01 -39.73 -0.40 -2.51 16 12 C -0.20 -4.06 9.62 -38.90 -0.37 -4.44 16 13 C -0.11 -2.66 5.87 -105.05 -0.62 -3.28 16 14 C 0.51 11.30 7.90 34.62 0.27 11.57 16 15 O -0.52 -12.80 16.12 -19.23 -0.31 -13.11 16 16 O -0.36 -6.35 7.97 -40.52 -0.32 -6.67 16 17 C 0.05 0.78 5.80 37.15 0.22 0.99 16 18 C 0.11 1.34 5.66 -4.05 -0.02 1.32 16 19 N -0.60 -7.18 2.78 -174.85 -0.49 -7.67 16 20 C 0.11 1.08 6.20 -4.39 -0.03 1.06 16 21 C -0.14 -1.19 6.03 -26.50 -0.16 -1.35 16 22 C -0.12 -0.91 6.03 -26.51 -0.16 -1.07 16 23 C -0.13 -1.29 6.03 -28.10 -0.17 -1.46 16 24 C 0.52 6.82 7.46 -11.87 -0.09 6.73 16 25 O -0.56 -9.43 16.18 5.55 0.09 -9.34 16 26 C -0.09 -2.36 8.23 -38.43 -0.32 -2.68 16 27 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 28 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 29 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.10 1.81 7.59 -52.49 -0.40 1.41 16 31 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.11 1.27 7.13 -51.93 -0.37 0.89 16 34 H 0.09 0.87 8.01 -51.93 -0.42 0.46 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.06 6.75 -51.93 -0.35 0.71 16 37 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.07 0.47 8.12 -51.93 -0.42 0.04 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.13 3.79 5.74 -52.48 -0.30 3.48 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -30.84 360.09 -9.31 -40.15 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.03 Total: 6.30 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -3.25 Total: -8.64 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.12 Total: -27.52 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.54 Total: -29.12 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.84 -9.31 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171660799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.386 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds