Wall clock time and date at job start Tue Mar 31 2020 11:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48508 * 109.47025 * 239.99489 * 3 2 1 5 5 H 1.48501 * 109.47522 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47205 * 119.99879 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99786 * 197.84555 * 7 2 1 9 9 C 1.41441 * 120.00330 * 17.85009 * 7 2 1 10 10 C 1.40789 * 120.17489 * 204.37574 * 9 7 2 11 11 C 1.37715 * 120.04900 * 179.97438 * 10 9 7 12 12 C 1.38360 * 120.42165 * 0.03954 * 11 10 9 13 13 C 1.39932 * 120.35031 * 359.97438 * 12 11 10 14 14 C 1.47764 * 120.03017 * 180.02562 * 13 12 11 15 15 O 1.21459 * 120.00089 * 179.97438 * 14 13 12 16 16 O 1.34710 * 120.00105 * 359.97438 * 14 13 12 17 17 C 1.45194 * 117.00209 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.47283 * 180.02562 * 17 16 14 19 19 N 1.46499 * 109.47364 * 64.99946 * 18 17 16 20 20 C 1.45753 * 117.94543 * 269.73988 * 19 18 17 21 21 C 1.53099 * 110.38964 * 160.74379 * 20 19 18 22 22 C 1.53346 * 108.52661 * 51.11274 * 21 20 19 23 23 C 1.53073 * 108.42714 * 292.31257 * 22 21 20 24 24 C 1.33351 * 117.94901 * 90.00417 * 19 18 17 25 25 O 1.21284 * 118.24598 * 2.24177 * 24 19 18 26 26 C 1.39088 * 119.93522 * 359.97438 * 13 12 11 27 27 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.97749 * 0.03619 * 10 9 7 29 29 H 1.07998 * 119.78976 * 180.02562 * 11 10 9 30 30 H 1.07997 * 119.82473 * 179.97438 * 12 11 10 31 31 H 1.09009 * 109.47249 * 299.99776 * 17 16 14 32 32 H 1.08996 * 109.47212 * 59.99470 * 17 16 14 33 33 H 1.09005 * 109.47129 * 184.99880 * 18 17 16 34 34 H 1.09003 * 109.47000 * 304.99365 * 18 17 16 35 35 H 1.09006 * 109.30146 * 281.23533 * 20 19 18 36 36 H 1.09004 * 109.30010 * 40.60742 * 20 19 18 37 37 H 1.09000 * 109.80539 * 291.32933 * 21 20 19 38 38 H 1.09001 * 109.68179 * 170.82520 * 21 20 19 39 39 H 1.09010 * 109.67372 * 172.57607 * 22 21 20 40 40 H 1.08999 * 109.67411 * 52.04882 * 22 21 20 41 41 H 1.08996 * 109.39799 * 288.77284 * 23 22 21 42 42 H 1.09000 * 109.33012 * 168.98890 * 23 22 21 43 43 H 1.08004 * 120.19894 * 179.72031 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3517 -2.4075 -0.3744 10 6 1.8271 -3.6500 0.0864 11 6 1.1859 -4.8125 -0.2798 12 6 0.0735 -4.7701 -1.1015 13 6 -0.4134 -3.5446 -1.5696 14 6 -1.6023 -3.5075 -2.4463 15 8 -2.0248 -2.4434 -2.8519 16 8 -2.2176 -4.6538 -2.7956 17 6 -3.3798 -4.5416 -3.6587 18 6 -3.9396 -5.9365 -3.9443 19 7 -4.4369 -6.5274 -2.6994 20 6 -3.5095 -7.3189 -1.9008 21 6 -4.0193 -7.4475 -0.4629 22 6 -5.4743 -7.9300 -0.5031 23 6 -6.3369 -6.8165 -1.1022 24 6 -5.7112 -6.3119 -2.3707 25 8 -6.4019 -5.6746 -3.1374 26 6 0.2221 -2.3614 -1.2080 27 1 -0.4850 0.8400 -0.0004 28 1 2.6946 -3.6916 0.7284 29 1 1.5539 -5.7633 0.0764 30 1 -0.4216 -5.6877 -1.3830 31 1 -4.1422 -3.9386 -3.1651 32 1 -3.0916 -4.0663 -4.5963 33 1 -4.7564 -5.8602 -4.6620 34 1 -3.1516 -6.5668 -4.3563 35 1 -3.4102 -8.3108 -2.3416 36 1 -2.5343 -6.8320 -1.8933 37 1 -3.9688 -6.4791 0.0349 38 1 -3.4093 -8.1699 0.0796 39 1 -5.8146 -8.1543 0.5079 40 1 -5.5474 -8.8242 -1.1221 41 1 -6.4181 -5.9973 -0.3878 42 1 -7.3310 -7.2074 -1.3193 43 1 -0.1474 -1.4135 -1.5705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171660799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:47 Heat of formation + Delta-G solvation = -130.904787 kcal Electronic energy + Delta-G solvation = -26416.305610 eV Core-core repulsion = 22617.876337 eV Total energy + Delta-G solvation = -3798.429272 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76747 -41.20431 -39.19402 -37.75527 -37.30862 -35.64402 -35.25581 -32.32850 -31.37187 -30.92102 -30.30399 -27.30439 -25.92253 -25.04689 -24.19707 -22.86464 -22.56716 -21.55680 -19.69286 -19.58247 -18.27961 -18.00057 -17.85521 -17.31915 -17.07770 -16.85898 -16.51826 -16.32496 -15.41383 -15.23930 -15.21039 -14.92948 -14.69441 -14.41331 -14.22456 -14.16878 -13.88741 -13.62164 -13.46741 -13.03269 -12.92229 -12.83053 -12.59760 -12.56041 -12.23523 -12.16188 -12.05924 -11.82028 -11.80167 -11.77103 -11.55180 -11.30209 -11.08973 -10.68903 -9.78919 -9.61233 -9.43618 -8.69611 -6.40491 0.13219 0.98001 1.36234 1.46320 1.49647 1.49954 1.66421 1.80162 2.01937 2.17706 2.72120 3.57801 3.63614 3.74222 3.84734 3.91079 3.93432 3.95027 4.00578 4.17841 4.41752 4.48366 4.54088 4.60060 4.60971 4.65409 4.76694 4.85656 4.90818 4.95950 5.04921 5.08798 5.14539 5.17972 5.25155 5.28000 5.37690 5.42209 5.45711 5.82609 5.89774 6.01532 6.24020 6.44024 6.53202 6.79482 6.85984 6.89549 7.08133 8.27351 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.003189 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.613885 B = 8777.063564 C = 9303.138389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.496 4.496 8 H 0.088 0.912 9 C 0.066 3.934 10 C -0.202 4.202 11 C -0.097 4.097 12 C -0.173 4.173 13 C -0.128 4.128 14 C 0.513 3.487 15 O -0.553 6.553 16 O -0.336 6.336 17 C 0.050 3.950 18 C 0.117 3.883 19 N -0.597 5.597 20 C 0.104 3.896 21 C -0.137 4.137 22 C -0.114 4.114 23 C -0.133 4.133 24 C 0.505 3.495 25 O -0.606 6.606 26 C -0.127 4.127 27 H 0.286 0.714 28 H 0.115 0.885 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 -17.505 -1.176 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.184 4.184 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.175 1.175 7 C -0.525 4.525 8 H 0.106 0.894 9 C 0.064 3.936 10 C -0.222 4.222 11 C -0.115 4.115 12 C -0.192 4.192 13 C -0.129 4.129 14 C 0.361 3.639 15 O -0.446 6.446 16 O -0.252 6.252 17 C -0.026 4.026 18 C -0.006 4.006 19 N -0.328 5.328 20 C -0.017 4.017 21 C -0.175 4.175 22 C -0.151 4.151 23 C -0.173 4.173 24 C 0.295 3.705 25 O -0.489 6.489 26 C -0.147 4.147 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.163 0.837 30 H 0.157 0.843 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.891 -16.774 -1.652 18.210 hybrid contribution -0.044 1.717 -0.180 1.727 sum -6.935 -15.057 -1.832 16.678 Atomic orbital electron populations 1.69874 1.09308 1.30710 1.35490 1.26844 0.95350 1.04992 0.91248 0.85248 0.78700 0.75448 0.80374 1.18457 1.19924 1.17465 1.19857 0.98752 0.92046 1.41882 0.89391 1.17873 0.91574 0.94144 0.90012 1.21521 1.03529 0.92561 1.04589 1.20984 0.95141 0.98016 0.97325 1.20962 0.99594 0.95184 1.03452 1.19071 0.95245 0.96316 1.02299 1.21824 0.82865 0.81420 0.77802 1.90753 1.66135 1.32904 1.54795 1.86528 1.42126 1.33635 1.62957 1.23603 0.84871 1.00355 0.93721 1.21661 1.00345 0.91018 0.87540 1.47473 1.10517 1.51089 1.23698 1.21806 0.92582 0.95861 0.91480 1.21947 0.97605 1.02739 0.95220 1.21657 0.93502 0.97010 1.02938 1.21710 1.01172 1.01128 0.93265 1.20932 0.81636 0.79034 0.88900 1.90682 1.61692 1.43623 1.52900 1.21446 0.98387 0.95876 0.99006 0.90313 0.86714 0.83718 0.84270 0.93999 0.89906 0.87354 0.86096 0.88839 0.90146 0.92876 0.87181 0.88638 0.89788 0.88533 0.87304 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.68 10.95 21.82 0.24 -45.44 16 2 C 0.03 1.57 5.14 85.25 0.44 2.00 16 3 Si 0.98 38.93 29.59 68.60 2.03 40.96 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 7 C -0.50 -26.26 9.05 23.47 0.21 -26.04 16 8 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 9 C 0.07 3.48 5.57 -21.32 -0.12 3.36 16 10 C -0.20 -8.97 9.78 22.77 0.22 -8.75 16 11 C -0.10 -3.62 10.01 22.17 0.22 -3.40 16 12 C -0.17 -6.67 9.62 22.71 0.22 -6.45 16 13 C -0.13 -6.03 5.87 -20.14 -0.12 -6.15 16 14 C 0.51 23.11 7.90 70.34 0.56 23.66 16 15 O -0.55 -28.80 16.12 19.97 0.32 -28.48 16 16 O -0.34 -11.70 7.97 -56.19 -0.45 -12.15 16 17 C 0.05 1.52 5.80 71.98 0.42 1.94 16 18 C 0.12 2.64 5.66 86.38 0.49 3.13 16 19 N -0.60 -13.32 2.78 -826.29 -2.30 -15.62 16 20 C 0.10 1.71 6.20 86.55 0.54 2.24 16 21 C -0.14 -1.93 6.03 30.74 0.19 -1.74 16 22 C -0.11 -1.31 6.03 30.73 0.19 -1.12 16 23 C -0.13 -2.35 6.03 29.71 0.18 -2.17 16 24 C 0.50 12.98 7.46 87.71 0.65 13.63 16 25 O -0.61 -20.67 16.18 -3.04 -0.05 -20.72 16 26 C -0.13 -6.93 8.23 23.02 0.19 -6.74 16 27 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 28 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.14 4.30 7.59 -2.91 -0.02 4.28 16 31 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.11 2.48 7.13 -2.38 -0.02 2.46 16 34 H 0.12 1.97 8.01 -2.39 -0.02 1.95 16 35 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.08 1.54 6.75 -2.38 -0.02 1.53 16 37 H 0.05 1.01 8.12 -2.39 -0.02 0.99 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 41 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.10 6.07 5.74 -2.91 -0.02 6.06 16 Total: -1.00 -72.23 360.09 5.28 -66.95 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 1.02 Total: 27.10 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.47 Total: -12.60 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -2.06 Total: -61.06 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -0.18 Total: -61.35 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -72.23 5.28 -66.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171660799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.952 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds