Wall clock time and date at job start Tue Mar 31 2020 11:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 120.00495 * 2 1 4 4 N 1.34780 * 119.99875 * 180.02562 * 2 1 3 5 5 C 1.39954 * 120.00310 * 185.69207 * 4 2 1 6 6 C 1.38634 * 119.99583 * 33.57966 * 5 4 2 7 7 C 1.39510 * 119.77172 * 180.25481 * 6 5 4 8 8 C 1.47736 * 120.11294 * 179.72134 * 7 6 5 9 9 O 1.21468 * 120.00481 * 4.78019 * 8 7 6 10 10 O 1.34714 * 119.99694 * 184.78151 * 8 7 6 11 11 C 1.45194 * 117.00093 * 185.04454 * 10 8 7 12 12 C 1.52995 * 109.47452 * 184.92244 * 11 10 8 13 13 C 1.50701 * 115.54821 * 54.09096 * 12 11 10 14 14 H 1.07999 * 119.99915 * 215.58218 * 13 12 11 15 15 C 1.37876 * 119.99963 * 35.31172 * 13 12 11 16 16 N 1.31515 * 120.00019 * 355.82663 * 15 13 12 17 17 Si 1.86800 * 120.00159 * 175.83205 * 15 13 12 18 18 H 1.48498 * 109.47554 * 89.99377 * 17 15 13 19 19 H 1.48500 * 109.47144 * 209.99802 * 17 15 13 20 20 H 1.48501 * 109.47228 * 329.99622 * 17 15 13 21 21 C 1.53005 * 117.50390 * 199.76061 * 12 11 10 22 22 C 1.53001 * 117.50095 * 268.42141 * 12 11 10 23 23 C 1.39671 * 119.76390 * 359.45367 * 7 6 5 24 24 C 1.37965 * 119.99410 * 0.26853 * 23 7 6 25 25 C 1.38257 * 120.22823 * 0.02562 * 24 23 7 26 26 C 1.50701 * 119.88258 * 179.97438 * 25 24 23 27 27 H 1.09001 * 109.46823 * 240.00275 * 1 2 3 28 28 H 1.09006 * 109.46711 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47305 * 120.00241 * 1 2 3 30 30 H 0.97007 * 119.99768 * 5.68559 * 4 2 1 31 31 H 1.07995 * 120.11336 * 359.97438 * 6 5 4 32 32 H 1.09000 * 109.47774 * 64.92185 * 11 10 8 33 33 H 1.09006 * 109.46948 * 304.92453 * 11 10 8 34 34 H 0.97000 * 120.00217 * 185.00224 * 16 15 13 35 35 H 1.08997 * 117.49941 * 215.00283 * 21 12 11 36 36 H 1.09000 * 117.49156 * 0.02562 * 21 12 11 37 37 H 1.08995 * 117.49968 * 359.97438 * 22 12 11 38 38 H 1.09004 * 117.49737 * 144.96893 * 22 12 11 39 39 H 1.08006 * 120.00073 * 180.29784 * 23 7 6 40 40 H 1.07999 * 119.88086 * 180.02562 * 24 23 7 41 41 H 1.08997 * 109.47425 * 89.99624 * 26 25 24 42 42 H 1.09005 * 109.46715 * 209.99639 * 26 25 24 43 43 H 1.08997 * 109.46800 * 329.99790 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5752 -1.1704 0.1197 6 6 4.2067 -0.2061 0.8901 7 6 5.5972 -0.2105 1.0023 8 6 6.2783 0.8172 1.8163 9 8 5.6249 1.6146 2.4588 10 8 7.6241 0.8701 1.8459 11 6 8.2262 1.8309 2.7528 12 6 9.7440 1.8325 2.5599 13 6 10.2194 2.0586 1.1479 14 1 11.1007 1.5493 0.7867 15 6 9.5262 2.9114 0.3153 16 7 8.4053 3.4637 0.7253 17 14 10.1791 3.2823 -1.3952 18 1 9.6305 2.2951 -2.3593 19 1 9.7643 4.6503 -1.7974 20 1 11.6616 3.1965 -1.3885 21 6 10.5997 2.4023 3.6932 22 6 10.5692 0.8927 3.4412 23 6 6.3427 -1.1931 0.3471 24 6 5.7039 -2.1516 -0.4124 25 6 4.3263 -2.1434 -0.5284 26 6 3.6366 -3.1937 -1.3605 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 1.6994 -2.0052 -0.0841 31 1 3.6244 0.5485 1.3978 32 1 7.9911 1.5568 3.7812 33 1 7.8322 2.8252 2.5427 34 1 7.8801 4.0053 0.1156 35 1 11.5064 2.9406 3.4174 36 1 10.0812 2.7755 4.5763 37 1 10.0309 0.2735 4.1587 38 1 11.4557 0.4376 2.9995 39 1 7.4191 -1.2030 0.4353 40 1 6.2821 -2.9108 -0.9180 41 1 3.3972 -4.0535 -0.7349 42 1 2.7181 -2.7811 -1.7780 43 1 4.2957 -3.5061 -2.1705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174739505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:08 Heat of formation + Delta-G solvation = -67.354291 kcal Electronic energy + Delta-G solvation = -26420.339476 eV Core-core repulsion = 22624.665960 eV Total energy + Delta-G solvation = -3795.673516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73128 -39.37086 -38.26884 -36.63082 -34.89625 -34.82854 -32.68918 -32.11576 -31.02186 -28.85455 -27.79234 -26.14055 -25.26203 -23.18748 -22.40590 -21.22386 -20.55938 -20.22363 -19.09661 -17.81808 -17.17294 -16.56862 -16.09898 -15.82371 -15.45923 -15.22266 -14.90241 -14.57842 -14.48147 -14.07291 -13.90310 -13.69679 -13.46427 -12.99013 -12.92624 -12.61998 -12.52722 -12.18973 -12.07360 -11.68579 -11.59225 -11.49587 -11.22881 -10.96204 -10.73550 -10.46591 -10.45175 -10.28346 -9.96851 -9.88319 -9.47301 -9.21395 -8.92803 -8.72274 -8.67646 -8.19596 -8.11369 -5.91522 -4.06004 0.95179 1.39809 2.43284 2.86907 3.19402 3.31845 3.39287 3.41419 3.66779 4.10661 4.41218 4.50270 4.73087 4.78495 4.92319 5.02109 5.03478 5.11828 5.30581 5.34964 5.44399 5.49802 5.54206 5.63711 5.66794 5.75768 6.02488 6.09661 6.22906 6.27308 6.37654 6.47405 6.55677 6.60713 6.67342 6.74780 6.86783 7.00625 7.03934 7.19173 7.27588 7.54033 7.70297 7.95880 7.98177 8.38148 8.79359 8.93418 9.56342 11.02868 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.003660 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.170836 B = 7647.562118 C = 7738.018554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.502 3.498 3 O -0.513 6.513 4 N -0.673 5.673 5 C 0.125 3.875 6 C -0.059 4.059 7 C -0.094 4.094 8 C 0.501 3.499 9 O -0.518 6.518 10 O -0.315 6.315 11 C 0.119 3.881 12 C 0.047 3.953 13 C -0.483 4.483 14 H 0.062 0.938 15 C 0.074 3.926 16 N -0.880 5.880 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.196 4.196 22 C -0.209 4.209 23 C -0.070 4.070 24 C -0.117 4.117 25 C -0.092 4.092 26 C -0.114 4.114 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.409 0.591 31 H 0.146 0.854 32 H 0.019 0.981 33 H 0.119 0.881 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 -14.774 -2.849 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.290 3.710 3 O -0.387 6.387 4 N -0.320 5.320 5 C 0.032 3.968 6 C -0.080 4.080 7 C -0.096 4.096 8 C 0.345 3.655 9 O -0.409 6.409 10 O -0.229 6.229 11 C 0.046 3.954 12 C 0.047 3.953 13 C -0.520 4.520 14 H 0.080 0.920 15 C -0.129 4.129 16 N -0.517 5.517 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.234 4.234 22 C -0.246 4.246 23 C -0.088 4.088 24 C -0.135 4.135 25 C -0.094 4.094 26 C -0.171 4.171 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.245 0.755 31 H 0.164 0.836 32 H 0.037 0.963 33 H 0.137 0.863 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.520 -13.518 -2.695 20.021 hybrid contribution 0.068 -0.080 -0.831 0.838 sum -14.452 -13.598 -3.526 20.154 Atomic orbital electron populations 1.21918 0.90724 1.06071 1.04357 1.21076 0.90938 0.83298 0.75694 1.90852 1.70393 1.31060 1.46345 1.43531 1.05101 1.09797 1.73578 1.17266 0.82726 0.98015 0.98810 1.21168 0.93320 0.97936 0.95544 1.19211 0.92800 0.96589 1.00989 1.20866 0.82619 0.82542 0.79504 1.90747 1.67217 1.39860 1.43087 1.86470 1.18436 1.57609 1.60335 1.22858 0.92475 0.94148 0.85925 1.18923 0.87716 0.96769 0.91931 1.20424 1.11738 1.25204 0.94615 0.92010 1.24961 0.94729 0.94848 0.98374 1.69754 1.13559 1.33329 1.35102 0.86516 0.79181 0.77744 0.84180 1.20533 1.21136 1.19818 1.22987 1.03673 0.95213 1.01557 1.22947 1.04047 0.92192 1.05460 1.21606 1.01347 0.92215 0.93667 1.20827 0.92856 0.99615 1.00221 1.19828 0.93938 0.97596 0.98039 1.20761 1.00533 0.96744 0.99074 0.89049 0.88499 0.89253 0.75468 0.83611 0.96252 0.86299 0.92628 0.89826 0.91453 0.91308 0.90357 0.83666 0.84958 0.90921 0.91811 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.32 36.01 0.37 -0.71 16 2 C 0.50 5.95 7.67 -10.98 -0.08 5.86 16 3 O -0.51 -9.14 14.81 5.55 0.08 -9.06 16 4 N -0.67 -6.90 4.77 -9.89 -0.05 -6.95 16 5 C 0.13 1.75 6.25 -83.74 -0.52 1.22 16 6 C -0.06 -1.08 8.20 -38.96 -0.32 -1.40 16 7 C -0.09 -1.85 5.87 -105.01 -0.62 -2.47 16 8 C 0.50 11.94 7.88 34.61 0.27 12.21 16 9 O -0.52 -13.52 16.05 -19.24 -0.31 -13.83 16 10 O -0.31 -7.92 8.97 -40.53 -0.36 -8.28 16 11 C 0.12 3.07 4.45 37.15 0.17 3.24 16 12 C 0.05 1.20 2.21 -155.66 -0.34 0.85 16 13 C -0.48 -13.28 8.79 -34.44 -0.30 -13.58 16 14 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 15 C 0.07 2.05 5.34 -17.82 -0.10 1.95 16 16 N -0.88 -25.44 10.16 55.43 0.56 -24.87 16 17 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.20 -4.44 9.96 -26.69 -0.27 -4.71 16 22 C -0.21 -4.59 9.92 -26.69 -0.26 -4.86 16 23 C -0.07 -1.16 9.61 -39.15 -0.38 -1.53 16 24 C -0.12 -1.51 9.67 -39.67 -0.38 -1.90 16 25 C -0.09 -1.09 5.90 -104.35 -0.62 -1.70 16 26 C -0.11 -0.85 9.45 36.01 0.34 -0.51 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.68 8.12 -51.93 -0.42 0.25 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.41 2.42 7.77 -40.82 -0.32 2.10 16 31 H 0.15 2.95 6.04 -52.49 -0.32 2.63 16 32 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.12 3.42 5.77 -51.93 -0.30 3.12 16 34 H 0.26 7.46 8.32 -40.82 -0.34 7.13 16 35 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 39 H 0.15 2.44 7.62 -52.48 -0.40 2.04 16 40 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.41 7.13 -51.93 -0.37 0.04 16 43 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -35.12 366.93 -8.50 -43.62 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.89 Total: 5.31 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.04 Total: -8.04 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.52 Total: -31.82 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.59 Total: -31.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.12 -8.50 -43.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174739505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.731 kcal (2) G-P(sol) polarization free energy of solvation -35.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds