Wall clock time and date at job start Tue Mar 31 2020 11:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38165 * 119.96965 * 2 1 4 4 C 1.38712 * 119.93838 * 179.70882 * 3 2 1 5 5 O 1.35905 * 120.05293 * 180.31421 * 4 3 2 6 6 C 1.38749 * 119.89455 * 0.53708 * 4 3 2 7 7 C 1.50697 * 120.03542 * 179.73218 * 6 4 3 8 8 N 1.46896 * 109.47005 * 74.46119 * 7 6 4 9 9 C 1.46903 * 110.99905 * 186.99367 * 8 7 6 10 10 C 1.50703 * 109.47078 * 176.53631 * 9 8 7 11 11 H 1.08003 * 120.00021 * 4.87960 * 10 9 8 12 12 C 1.37880 * 119.99824 * 184.87694 * 10 9 8 13 13 N 1.31518 * 119.99761 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00299 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.46912 * 89.99934 * 14 12 10 16 16 H 1.48491 * 109.47229 * 210.00295 * 14 12 10 17 17 H 1.48502 * 109.46986 * 330.00314 * 14 12 10 18 18 C 1.46895 * 111.00179 * 63.04055 * 8 7 6 19 19 C 1.52999 * 109.47022 * 69.76670 * 18 8 7 20 20 F 1.39899 * 109.47474 * 65.36613 * 19 18 8 21 21 F 1.39906 * 109.47271 * 185.36566 * 19 18 8 22 22 F 1.39895 * 109.47388 * 305.36293 * 19 18 8 23 23 C 1.38127 * 119.94167 * 359.75247 * 6 4 3 24 24 C 1.38243 * 119.97174 * 180.26874 * 2 1 3 25 25 C 1.50699 * 119.94411 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47228 * 269.72885 * 1 2 3 27 27 H 1.08998 * 109.46786 * 149.73200 * 1 2 3 28 28 H 1.08995 * 109.47291 * 29.72731 * 1 2 3 29 29 H 1.07996 * 120.02917 * 359.97438 * 3 2 1 30 30 H 0.96700 * 113.99749 * 275.23568 * 5 4 3 31 31 H 1.08993 * 109.47633 * 194.46566 * 7 6 4 32 32 H 1.09003 * 109.46974 * 314.46178 * 7 6 4 33 33 H 1.08996 * 109.47454 * 296.54031 * 9 8 7 34 34 H 1.09003 * 109.47121 * 56.53856 * 9 8 7 35 35 H 0.96999 * 119.99601 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47582 * 189.76196 * 18 8 7 37 37 H 1.09000 * 109.47169 * 309.76558 * 18 8 7 38 38 H 1.07999 * 119.97439 * 179.97438 * 23 6 4 39 39 H 1.08998 * 109.47175 * 90.00045 * 25 24 2 40 40 H 1.09002 * 109.47283 * 210.00135 * 25 24 2 41 41 H 1.09003 * 109.47391 * 330.00189 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1962 0.0061 5 8 4.2656 2.3721 0.0126 6 6 4.2752 -0.0071 0.0009 7 6 5.7822 -0.0115 0.0014 8 7 6.2725 0.3520 1.3376 9 6 7.7319 0.5200 1.3352 10 6 8.1875 0.9743 2.6980 11 1 7.4771 1.0475 3.5082 12 6 9.5112 1.2963 2.9104 13 7 9.9089 1.6923 4.0998 14 14 10.7397 1.1703 1.5088 15 1 10.7986 2.4652 0.7844 16 1 12.0822 0.8470 2.0549 17 1 10.3147 0.0985 0.5730 18 6 5.8585 -0.6405 2.3383 19 6 6.6178 -1.9480 2.1043 20 9 7.9818 -1.7435 2.3387 21 9 6.1366 -2.9294 2.9776 22 9 6.4294 -2.3667 0.7829 23 6 3.5806 -1.2009 -0.0051 24 6 2.1977 -1.1975 -0.0056 25 6 1.4422 -2.5015 -0.0111 26 1 -0.3633 -0.0049 1.0276 27 1 -0.3633 -0.8876 -0.5180 28 1 -0.3633 0.8924 -0.5096 29 1 1.6572 2.1322 -0.0004 30 1 4.3968 2.7554 -0.8655 31 1 6.1427 -1.0064 -0.2596 32 1 6.1479 0.7105 -0.7287 33 1 8.2066 -0.4304 1.0915 34 1 8.0104 1.2665 0.5914 35 1 10.8401 1.9192 4.2491 36 1 6.0815 -0.2646 3.3369 37 1 4.7873 -0.8214 2.2491 38 1 4.1178 -2.1378 -0.0096 39 1 1.2597 -2.8113 -1.0401 40 1 2.0304 -3.2643 0.4991 41 1 0.4902 -2.3721 0.5036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176873166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:03 Heat of formation + Delta-G solvation = -154.798611 kcal Electronic energy + Delta-G solvation = -28360.032896 eV Core-core repulsion = 24018.710770 eV Total energy + Delta-G solvation = -4341.322126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.62651 -47.19351 -46.90259 -40.07099 -37.12438 -36.83084 -33.19021 -32.22726 -31.70490 -29.21460 -28.79526 -26.96419 -25.79258 -23.69006 -22.89418 -22.20584 -20.65899 -20.01328 -18.15089 -17.95832 -17.69320 -16.97449 -16.41312 -16.23700 -15.30140 -14.96515 -14.64122 -14.51293 -14.18855 -14.15001 -14.08943 -13.85991 -13.49730 -13.47246 -13.18257 -13.09018 -12.98628 -12.91678 -12.57401 -12.37493 -12.19173 -11.80973 -11.57393 -11.48766 -11.43896 -11.42161 -11.18740 -10.93456 -10.55701 -10.43577 -10.16242 -9.86050 -9.28942 -8.66803 -8.54467 -8.18957 -7.54597 -6.03492 -4.00716 1.31092 1.37336 3.30248 3.37793 3.40183 3.42060 3.60309 4.34930 4.42110 4.44592 4.47234 4.74262 4.76722 4.80760 4.90699 5.02686 5.17346 5.21294 5.31352 5.39728 5.44371 5.51945 5.66897 5.67562 5.71693 5.75405 5.81929 5.97200 6.10169 6.14939 6.24437 6.37293 6.59290 6.63359 6.76384 6.85919 6.94265 7.42419 7.66686 7.83878 7.93585 8.58161 8.99806 9.57629 11.09443 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.004792 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.607788 B = 5841.245054 C = 6765.678425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 C -0.151 4.151 4 C 0.131 3.869 5 O -0.478 6.478 6 C -0.098 4.098 7 C 0.059 3.941 8 N -0.492 5.492 9 C 0.138 3.862 10 C -0.505 4.505 11 H 0.080 0.920 12 C 0.075 3.925 13 N -0.898 5.898 14 Si 0.871 3.129 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.267 1.267 18 C 0.029 3.971 19 C 0.410 3.590 20 F -0.155 7.155 21 F -0.200 7.200 22 F -0.194 7.194 23 C -0.099 4.099 24 C -0.102 4.102 25 C -0.113 4.113 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.124 0.876 30 H 0.381 0.619 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.013 0.987 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 -6.226 -10.741 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.077 4.077 3 C -0.170 4.170 4 C 0.086 3.914 5 O -0.287 6.287 6 C -0.099 4.099 7 C -0.068 4.068 8 N -0.212 5.212 9 C 0.013 3.987 10 C -0.543 4.543 11 H 0.098 0.902 12 C -0.127 4.127 13 N -0.537 5.537 14 Si 0.699 3.301 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.102 4.102 19 C 0.353 3.647 20 F -0.136 7.136 21 F -0.182 7.182 22 F -0.176 7.176 23 C -0.118 4.118 24 C -0.102 4.102 25 C -0.169 4.169 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.236 0.764 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.031 0.969 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.145 0.855 37 H 0.115 0.885 38 H 0.142 0.858 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.779 -5.789 -9.920 20.333 hybrid contribution 1.358 -0.763 -1.378 2.080 sum -15.421 -6.552 -11.298 20.209 Atomic orbital electron populations 1.20799 0.91351 1.02545 1.02288 1.19549 0.95728 0.92163 1.00303 1.21297 0.93578 0.98051 1.04066 1.18258 0.89120 0.85457 0.98555 1.84999 1.76434 1.34548 1.32669 1.20191 0.96171 0.92379 1.01140 1.21596 0.90088 1.02280 0.92837 1.62178 1.16196 1.40208 1.02661 1.20753 0.81424 0.96875 0.99648 1.20854 0.94575 1.44572 0.94290 0.90211 1.24792 0.97984 0.94590 0.95326 1.69881 1.16724 1.45632 1.21468 0.86916 0.81193 0.78845 0.83186 1.20194 1.21215 1.19210 1.23611 0.99046 0.84977 1.02612 1.22811 0.80623 0.88455 0.72787 1.93267 1.32312 1.94398 1.93640 1.93119 1.88208 1.66756 1.70088 1.92916 1.95229 1.91808 1.37614 1.20936 0.93283 0.97531 1.00042 1.19684 0.93494 0.94807 1.02188 1.20781 0.99928 0.94192 1.02019 0.91194 0.91406 0.91741 0.85757 0.76374 0.91044 0.90153 0.96950 0.95224 0.92667 0.85497 0.88462 0.85796 0.91466 0.91592 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.19 36.01 0.33 -0.60 16 2 C -0.08 -0.88 5.88 -104.65 -0.62 -1.49 16 3 C -0.15 -1.89 9.64 -39.43 -0.38 -2.27 16 4 C 0.13 1.90 6.68 -39.22 -0.26 1.64 16 5 O -0.48 -7.05 12.85 -19.44 -0.25 -7.30 16 6 C -0.10 -1.46 4.31 -104.48 -0.45 -1.91 16 7 C 0.06 1.00 4.40 -4.98 -0.02 0.98 16 8 N -0.49 -10.00 4.77 -237.52 -1.13 -11.13 16 9 C 0.14 3.27 3.23 -4.97 -0.02 3.26 16 10 C -0.50 -13.99 8.15 -34.44 -0.28 -14.27 16 11 H 0.08 2.38 6.72 -52.48 -0.35 2.03 16 12 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 13 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 14 Si 0.87 21.64 27.37 -169.99 -4.65 16.98 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.44 6.69 56.52 0.38 -6.06 16 18 C 0.03 0.55 5.14 -3.83 -0.02 0.53 16 19 C 0.41 7.77 2.89 37.16 0.11 7.88 16 20 F -0.16 -3.49 13.12 2.25 0.03 -3.46 16 21 F -0.20 -3.59 17.32 2.25 0.04 -3.55 16 22 F -0.19 -3.38 12.89 2.25 0.03 -3.35 16 23 C -0.10 -1.33 8.51 -39.60 -0.34 -1.67 16 24 C -0.10 -1.19 5.88 -104.60 -0.62 -1.81 16 25 C -0.11 -1.00 9.19 36.01 0.33 -0.67 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.48 6.69 -51.93 -0.35 0.13 16 28 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.38 3.71 9.06 45.56 0.41 4.13 16 31 H 0.07 1.20 4.60 -51.93 -0.24 0.96 16 32 H 0.08 1.32 7.96 -51.93 -0.41 0.90 16 33 H 0.01 0.32 4.78 -51.93 -0.25 0.07 16 34 H 0.03 0.71 7.25 -51.93 -0.38 0.34 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.13 2.61 6.56 -51.93 -0.34 2.27 16 37 H 0.10 1.64 6.28 -51.93 -0.33 1.32 16 38 H 0.12 1.61 7.09 -52.49 -0.37 1.24 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 41 H 0.07 0.52 6.69 -51.93 -0.35 0.17 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -32.00 334.26 -6.67 -38.67 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.22 Total: 3.09 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -2.33 Total: -8.36 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.36 Total: -37.75 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.25 Total: -7.30 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 0.10 Total: -10.36 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.65 Total: 16.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.00 -6.67 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176873166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.126 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds