Wall clock time and date at job start Tue Mar 31 2020 11:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38165 * 119.96965 * 2 1 4 4 C 1.38712 * 119.93838 * 179.70882 * 3 2 1 5 5 O 1.35905 * 120.05293 * 180.31421 * 4 3 2 6 6 C 1.38749 * 119.89455 * 0.53708 * 4 3 2 7 7 C 1.50697 * 120.03542 * 179.73218 * 6 4 3 8 8 N 1.46896 * 109.47005 * 74.46119 * 7 6 4 9 9 C 1.46903 * 110.99905 * 186.99367 * 8 7 6 10 10 C 1.50703 * 109.47078 * 176.53631 * 9 8 7 11 11 H 1.08003 * 120.00021 * 4.87960 * 10 9 8 12 12 C 1.37880 * 119.99824 * 184.87694 * 10 9 8 13 13 N 1.31518 * 119.99761 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00299 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.46912 * 89.99934 * 14 12 10 16 16 H 1.48491 * 109.47229 * 210.00295 * 14 12 10 17 17 H 1.48502 * 109.46986 * 330.00314 * 14 12 10 18 18 C 1.46895 * 111.00179 * 63.04055 * 8 7 6 19 19 C 1.52999 * 109.47022 * 69.76670 * 18 8 7 20 20 F 1.39899 * 109.47474 * 65.36613 * 19 18 8 21 21 F 1.39906 * 109.47271 * 185.36566 * 19 18 8 22 22 F 1.39895 * 109.47388 * 305.36293 * 19 18 8 23 23 C 1.38127 * 119.94167 * 359.75247 * 6 4 3 24 24 C 1.38243 * 119.97174 * 180.26874 * 2 1 3 25 25 C 1.50699 * 119.94411 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47228 * 269.72885 * 1 2 3 27 27 H 1.08998 * 109.46786 * 149.73200 * 1 2 3 28 28 H 1.08995 * 109.47291 * 29.72731 * 1 2 3 29 29 H 1.07996 * 120.02917 * 359.97438 * 3 2 1 30 30 H 0.96700 * 113.99749 * 275.23568 * 5 4 3 31 31 H 1.08993 * 109.47633 * 194.46566 * 7 6 4 32 32 H 1.09003 * 109.46974 * 314.46178 * 7 6 4 33 33 H 1.08996 * 109.47454 * 296.54031 * 9 8 7 34 34 H 1.09003 * 109.47121 * 56.53856 * 9 8 7 35 35 H 0.96999 * 119.99601 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47582 * 189.76196 * 18 8 7 37 37 H 1.09000 * 109.47169 * 309.76558 * 18 8 7 38 38 H 1.07999 * 119.97439 * 179.97438 * 23 6 4 39 39 H 1.08998 * 109.47175 * 90.00045 * 25 24 2 40 40 H 1.09002 * 109.47283 * 210.00135 * 25 24 2 41 41 H 1.09003 * 109.47391 * 330.00189 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1962 0.0061 5 8 4.2656 2.3721 0.0126 6 6 4.2752 -0.0071 0.0009 7 6 5.7822 -0.0115 0.0014 8 7 6.2725 0.3520 1.3376 9 6 7.7319 0.5200 1.3352 10 6 8.1875 0.9743 2.6980 11 1 7.4771 1.0475 3.5082 12 6 9.5112 1.2963 2.9104 13 7 9.9089 1.6923 4.0998 14 14 10.7397 1.1703 1.5088 15 1 10.7986 2.4652 0.7844 16 1 12.0822 0.8470 2.0549 17 1 10.3147 0.0985 0.5730 18 6 5.8585 -0.6405 2.3383 19 6 6.6178 -1.9480 2.1043 20 9 7.9818 -1.7435 2.3387 21 9 6.1366 -2.9294 2.9776 22 9 6.4294 -2.3667 0.7829 23 6 3.5806 -1.2009 -0.0051 24 6 2.1977 -1.1975 -0.0056 25 6 1.4422 -2.5015 -0.0111 26 1 -0.3633 -0.0049 1.0276 27 1 -0.3633 -0.8876 -0.5180 28 1 -0.3633 0.8924 -0.5096 29 1 1.6572 2.1322 -0.0004 30 1 4.3968 2.7554 -0.8655 31 1 6.1427 -1.0064 -0.2596 32 1 6.1479 0.7105 -0.7287 33 1 8.2066 -0.4304 1.0915 34 1 8.0104 1.2665 0.5914 35 1 10.8401 1.9192 4.2491 36 1 6.0815 -0.2646 3.3369 37 1 4.7873 -0.8214 2.2491 38 1 4.1178 -2.1378 -0.0096 39 1 1.2597 -2.8113 -1.0401 40 1 2.0304 -3.2643 0.4991 41 1 0.4902 -2.3721 0.5036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176873166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:03 Heat of formation + Delta-G solvation = -176.729950 kcal Electronic energy + Delta-G solvation = -28360.983910 eV Core-core repulsion = 24018.710770 eV Total energy + Delta-G solvation = -4342.273141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.18717 -48.69570 -48.54622 -41.09084 -38.55055 -37.94299 -34.84133 -33.78827 -32.57141 -30.78433 -30.26429 -28.08594 -26.95301 -25.00360 -24.59048 -23.16275 -22.34748 -21.13191 -19.75302 -19.54063 -19.01259 -18.61007 -18.01811 -17.32082 -16.58479 -16.48460 -16.03814 -15.90128 -15.89000 -15.55941 -15.39003 -15.03957 -14.98351 -14.74297 -14.67694 -14.38364 -14.30984 -13.93251 -13.79721 -13.54205 -13.31771 -13.24867 -13.08695 -12.94389 -12.80275 -12.53895 -12.33736 -12.26685 -12.17157 -11.87925 -11.83623 -11.45705 -11.16098 -10.73674 -9.65137 -9.20830 -9.11104 -8.24506 -6.25733 0.32849 0.40004 1.34101 1.36001 1.45454 1.85881 2.36220 2.57102 2.87651 2.94305 3.10975 3.16985 3.41013 3.46310 3.80065 3.92175 4.02873 4.16924 4.25041 4.41412 4.48236 4.56658 4.61459 4.70823 4.81868 4.84917 4.86325 4.90192 4.97711 4.99755 5.07086 5.28393 5.33734 5.44497 5.47789 5.63004 5.72492 5.86401 6.03755 6.06704 6.50639 6.76286 7.02568 7.36122 8.91732 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.004792 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.607788 B = 5841.245054 C = 6765.678425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 C -0.157 4.157 4 C 0.117 3.883 5 O -0.501 6.501 6 C -0.118 4.118 7 C 0.064 3.936 8 N -0.504 5.504 9 C 0.149 3.851 10 C -0.501 4.501 11 H 0.044 0.956 12 C 0.017 3.983 13 N -0.946 5.946 14 Si 0.933 3.067 15 H -0.265 1.265 16 H -0.285 1.285 17 H -0.254 1.254 18 C 0.036 3.964 19 C 0.415 3.585 20 F -0.178 7.178 21 F -0.192 7.192 22 F -0.181 7.181 23 C -0.106 4.106 24 C -0.105 4.105 25 C -0.112 4.112 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.399 0.601 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.013 0.987 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.715 -7.187 -12.727 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.074 4.074 3 C -0.175 4.175 4 C 0.072 3.928 5 O -0.312 6.312 6 C -0.119 4.119 7 C -0.062 4.062 8 N -0.224 5.224 9 C 0.023 3.977 10 C -0.539 4.539 11 H 0.062 0.938 12 C -0.181 4.181 13 N -0.587 5.587 14 Si 0.757 3.243 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.178 1.178 18 C -0.096 4.096 19 C 0.359 3.641 20 F -0.159 7.159 21 F -0.174 7.174 22 F -0.163 7.163 23 C -0.124 4.124 24 C -0.105 4.105 25 C -0.168 4.168 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.156 0.844 30 H 0.256 0.744 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.030 0.970 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.726 -6.757 -11.936 23.212 hybrid contribution 1.784 -0.475 -0.741 1.989 sum -16.942 -7.232 -12.677 22.362 Atomic orbital electron populations 1.20879 0.88857 1.03995 1.03176 1.19961 0.97543 0.91527 0.98406 1.21498 0.92872 0.99313 1.03862 1.18447 0.89990 0.85108 0.99280 1.84937 1.76772 1.34941 1.34580 1.20050 0.94805 0.93394 1.03672 1.21567 0.91775 1.02212 0.90655 1.62040 1.13994 1.41488 1.04912 1.20474 0.83780 0.96471 0.96988 1.21057 0.94009 1.43559 0.95322 0.93772 1.25630 1.00141 0.94503 0.97785 1.70026 1.17281 1.47575 1.23809 0.85919 0.78487 0.79641 0.80216 1.18962 1.21043 1.17756 1.23498 1.00225 0.84696 1.01154 1.22678 0.79412 0.88671 0.73363 1.93217 1.34235 1.94610 1.93878 1.93131 1.87935 1.66367 1.69935 1.92940 1.95042 1.91685 1.36624 1.21016 0.94221 0.96920 1.00265 1.20030 0.93026 0.96361 1.01044 1.20847 1.00211 0.92558 1.03219 0.90408 0.89770 0.90608 0.84384 0.74352 0.90861 0.89987 0.96975 0.95130 0.92607 0.87852 0.86189 0.85696 0.89982 0.91560 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.19 71.24 0.65 -0.79 16 2 C -0.07 -1.48 5.88 -19.88 -0.12 -1.60 16 3 C -0.16 -3.62 9.64 22.37 0.22 -3.41 16 4 C 0.12 3.26 6.68 22.51 0.15 3.41 16 5 O -0.50 -14.56 12.85 -92.48 -1.19 -15.75 16 6 C -0.12 -3.41 4.31 -19.77 -0.09 -3.50 16 7 C 0.06 2.12 4.40 85.56 0.38 2.50 16 8 N -0.50 -20.49 4.77 -905.39 -4.32 -24.81 16 9 C 0.15 7.06 3.23 85.56 0.28 7.34 16 10 C -0.50 -28.48 8.15 25.60 0.21 -28.27 16 11 H 0.04 2.77 6.72 -2.91 -0.02 2.75 16 12 C 0.02 0.99 5.47 84.65 0.46 1.45 16 13 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 14 Si 0.93 44.68 27.37 68.60 1.88 46.56 16 15 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.25 -11.48 6.69 99.48 0.67 -10.82 16 18 C 0.04 1.36 5.14 86.30 0.44 1.80 16 19 C 0.42 15.57 2.89 71.98 0.21 15.78 16 20 F -0.18 -8.05 13.12 44.97 0.59 -7.46 16 21 F -0.19 -6.73 17.32 44.97 0.78 -5.95 16 22 F -0.18 -6.09 12.89 44.97 0.58 -5.51 16 23 C -0.11 -2.65 8.51 22.26 0.19 -2.46 16 24 C -0.10 -2.18 5.88 -19.85 -0.12 -2.30 16 25 C -0.11 -1.62 9.19 71.24 0.65 -0.97 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 0.83 6.69 -2.39 -0.02 0.81 16 28 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 29 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.40 7.58 9.06 -74.06 -0.67 6.91 16 31 H 0.07 2.38 4.60 -2.39 -0.01 2.37 16 32 H 0.08 2.63 7.96 -2.39 -0.02 2.61 16 33 H 0.01 0.61 4.78 -2.39 -0.01 0.60 16 34 H 0.03 1.45 7.25 -2.39 -0.02 1.43 16 35 H 0.26 15.61 8.31 -92.71 -0.77 14.83 16 36 H 0.10 4.43 6.56 -2.39 -0.02 4.42 16 37 H 0.12 3.99 6.28 -2.39 -0.01 3.97 16 38 H 0.13 3.03 7.09 -2.91 -0.02 3.01 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 41 H 0.08 0.95 6.69 -2.39 -0.02 0.93 16 Total: -1.00 -69.49 334.26 2.52 -66.98 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.37 Total: 15.97 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 3.52 Total: -11.01 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -4.02 Total: -83.83 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -1.19 Total: -15.75 kcal Atomic # 9 Polarization: -20.87 SS G_CDS: 1.95 Total: -18.92 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -69.49 2.52 -66.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176873166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.754 kcal (2) G-P(sol) polarization free energy of solvation -69.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds