Wall clock time and date at job start Tue Mar 31 2020 12:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 117.00039 * 2 1 4 4 O 1.20828 * 119.99750 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00152 * 180.02562 * 3 2 1 6 6 C 1.53004 * 110.29274 * 60.68340 * 5 3 2 7 7 C 1.54617 * 110.41810 * 182.87679 * 5 3 2 8 8 C 1.54588 * 102.91490 * 140.63561 * 7 5 3 9 9 N 1.48119 * 103.42447 * 322.86889 * 8 7 5 10 10 C 1.34780 * 127.03478 * 219.29198 * 9 8 7 11 11 O 1.21542 * 119.99867 * 183.16178 * 10 9 8 12 12 C 1.47884 * 119.99752 * 3.15233 * 10 9 8 13 13 C 1.39924 * 120.02131 * 150.20660 * 12 10 9 14 14 C 1.38330 * 120.35791 * 180.02562 * 13 12 10 15 15 C 1.37748 * 120.41184 * 0.02562 * 14 13 12 16 16 C 1.40750 * 120.04205 * 359.95356 * 15 14 13 17 17 C 1.41441 * 120.17824 * 179.75133 * 16 15 14 18 18 H 1.08005 * 119.99864 * 152.70951 * 17 16 15 19 19 C 1.39932 * 119.99895 * 332.70989 * 17 16 15 20 20 N 1.30831 * 120.00164 * 345.20516 * 19 17 16 21 21 Si 1.86801 * 120.00093 * 165.20835 * 19 17 16 22 22 H 1.48505 * 109.46709 * 59.99776 * 21 19 17 23 23 H 1.48499 * 109.47345 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47186 * 300.00301 * 21 19 17 25 25 C 1.38997 * 120.02965 * 330.14316 * 12 10 9 26 26 C 1.47484 * 105.93079 * 39.02442 * 9 8 7 27 27 H 1.08999 * 109.47256 * 60.00182 * 1 2 3 28 28 H 1.09004 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46804 * 299.99757 * 1 2 3 30 30 H 1.09006 * 109.46732 * 299.32152 * 6 5 3 31 31 H 1.09001 * 109.46685 * 59.31404 * 6 5 3 32 32 H 1.08996 * 109.47671 * 179.32210 * 6 5 3 33 33 H 1.09000 * 110.73972 * 259.12659 * 7 5 3 34 34 H 1.08998 * 110.73536 * 22.44356 * 7 5 3 35 35 H 1.09000 * 110.61576 * 204.35731 * 8 7 5 36 36 H 1.08997 * 110.54633 * 81.35192 * 8 7 5 37 37 H 1.08005 * 119.81861 * 359.97438 * 13 12 10 38 38 H 1.07997 * 119.79003 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.98228 * 179.97438 * 15 14 13 40 40 H 0.96996 * 119.99796 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.19943 * 0.04169 * 25 12 10 42 42 H 1.08996 * 109.91410 * 94.14147 * 26 9 8 43 43 H 1.08995 * 109.91422 * 215.42091 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1325 0.6012 -1.2522 7 6 4.0292 2.7483 0.0723 8 6 5.2471 2.6813 1.0221 9 7 4.8484 1.6630 2.0211 10 6 5.0824 1.6924 3.3481 11 8 4.7461 0.7555 4.0454 12 6 5.7484 2.8648 3.9556 13 6 5.4648 3.2238 5.2779 14 6 6.0834 4.3194 5.8529 15 6 6.9850 5.0697 5.1307 16 6 7.2832 4.7237 3.7994 17 6 8.2046 5.4953 3.0536 18 1 8.7655 5.0395 2.2510 19 6 8.3893 6.8491 3.3555 20 7 7.5254 7.4741 4.1137 21 14 9.8693 7.7642 2.6760 22 1 9.8342 7.7290 1.1918 23 1 9.8341 9.1749 3.1383 24 1 11.1157 7.1159 3.1571 25 6 6.6575 3.6101 3.2139 26 6 4.1372 0.6133 1.2676 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8410 -0.4491 -1.2629 31 1 3.7398 1.0962 -2.1404 32 1 5.2199 0.6764 -1.2451 33 1 4.3253 3.1090 -0.9128 34 1 3.2470 3.3780 0.4960 35 1 5.4134 3.6459 1.5015 36 1 6.1373 2.3611 0.4807 37 1 4.7585 2.6428 5.8525 38 1 5.8574 4.5885 6.8741 39 1 7.4636 5.9240 5.5864 40 1 7.6537 8.4124 4.3232 41 1 6.8797 3.3364 2.1931 42 1 4.8313 -0.1806 0.9919 43 1 3.3260 0.2075 1.8719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177197748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:51 Heat of formation + Delta-G solvation = -93.216077 kcal Electronic energy + Delta-G solvation = -26633.984795 eV Core-core repulsion = 22837.189828 eV Total energy + Delta-G solvation = -3796.794967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.11193 -39.59104 -37.76390 -36.92262 -36.44952 -33.71105 -33.13834 -30.09325 -29.84979 -29.58730 -27.91995 -26.62021 -25.36304 -24.48714 -22.76244 -21.72048 -20.80806 -19.75491 -19.29585 -17.52245 -17.38760 -16.81221 -16.58974 -15.92133 -15.65603 -15.45065 -14.90134 -14.79932 -14.13137 -14.01939 -13.70925 -13.38752 -13.23793 -12.89758 -12.79449 -12.77203 -12.41216 -12.23424 -12.21628 -12.04684 -11.71277 -11.60100 -11.26010 -11.22519 -11.10484 -10.97381 -10.76127 -10.67613 -10.53801 -10.46662 -10.23636 -9.54773 -9.27582 -9.15061 -8.46637 -7.65171 -7.51998 -6.82919 -4.48282 2.02731 2.20983 2.48008 2.71349 3.02790 3.04371 3.11601 3.26183 3.67880 3.87672 4.14286 4.39805 4.54277 4.58578 4.80360 4.89936 4.97844 5.12348 5.23697 5.29354 5.32523 5.48639 5.50520 5.53727 5.66788 5.71041 5.81890 5.88143 6.02748 6.13585 6.16530 6.24060 6.36801 6.49085 6.71936 6.88155 6.98756 7.14448 7.32931 7.56716 7.60612 7.79110 7.86965 7.94553 8.06844 8.46914 8.69724 8.76361 8.79911 10.12640 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.003478 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.422105 B = 8048.168864 C = 8868.038001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.475 3.525 4 O -0.499 6.499 5 C -0.069 4.069 6 C -0.135 4.135 7 C -0.122 4.122 8 C 0.088 3.912 9 N -0.621 5.621 10 C 0.587 3.413 11 O -0.553 6.553 12 C -0.112 4.112 13 C -0.175 4.175 14 C -0.114 4.114 15 C -0.134 4.134 16 C 0.102 3.898 17 C -0.466 4.466 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.798 5.798 21 Si 0.909 3.091 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.197 4.197 26 C 0.123 3.877 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.282 0.718 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.639 -8.898 -10.778 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.385 6.385 5 C -0.070 4.070 6 C -0.192 4.192 7 C -0.160 4.160 8 C -0.034 4.034 9 N -0.356 5.356 10 C 0.380 3.620 11 O -0.432 6.432 12 C -0.115 4.115 13 C -0.196 4.196 14 C -0.133 4.133 15 C -0.154 4.154 16 C 0.100 3.900 17 C -0.496 4.496 18 H 0.097 0.903 19 C -0.141 4.141 20 N -0.424 5.424 21 Si 0.734 3.266 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.217 4.217 26 C -0.001 4.001 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.098 0.902 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.092 -8.866 -10.194 15.258 hybrid contribution 0.265 0.597 -0.341 0.737 sum -6.827 -8.269 -10.535 15.032 Atomic orbital electron populations 1.23284 0.76344 1.03703 1.02601 1.86505 1.23387 1.33304 1.84027 1.23488 0.91528 0.81369 0.71907 1.90668 1.66797 1.36344 1.44734 1.21508 0.87124 0.99836 0.98580 1.21874 1.02107 1.00899 0.94365 1.22890 0.99139 0.92575 1.01393 1.23018 0.96010 0.95186 0.89186 1.48657 1.57322 1.23101 1.06472 1.18631 0.77328 0.87124 0.78880 1.90682 1.53734 1.38085 1.60678 1.19200 1.01217 0.95640 0.95455 1.20407 1.05177 1.00024 0.93955 1.20679 0.98414 0.95759 0.98425 1.21546 0.99472 1.00198 0.94190 1.17535 0.90529 0.90499 0.91427 1.19486 1.20409 0.93870 1.15788 0.90328 1.25873 0.96323 0.98067 0.93868 1.69776 1.31722 1.11427 1.29456 0.86345 0.81941 0.78238 0.80078 1.18976 1.20367 1.18857 1.21524 1.01446 1.00300 0.98455 1.21872 0.97130 0.90864 0.90220 0.91918 0.88031 0.91819 0.90978 0.91603 0.90291 0.88994 0.88809 0.86500 0.90566 0.88356 0.88556 0.86074 0.90706 0.87191 0.90159 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.12 10.44 -39.24 -0.41 -4.53 16 3 C 0.48 6.31 6.38 36.00 0.23 6.54 16 4 O -0.50 -7.93 15.21 -18.75 -0.29 -8.22 16 5 C -0.07 -0.81 0.91 -154.28 -0.14 -0.95 16 6 C -0.14 -1.13 8.16 37.16 0.30 -0.83 16 7 C -0.12 -1.54 5.94 -25.05 -0.15 -1.69 16 8 C 0.09 1.29 5.24 -2.32 -0.01 1.28 16 9 N -0.62 -10.70 3.29 -171.08 -0.56 -11.26 16 10 C 0.59 12.56 7.64 -12.31 -0.09 12.46 16 11 O -0.55 -13.10 17.06 5.33 0.09 -13.01 16 12 C -0.11 -2.56 5.69 -105.04 -0.60 -3.16 16 13 C -0.18 -4.07 9.60 -38.92 -0.37 -4.44 16 14 C -0.11 -2.63 10.01 -39.73 -0.40 -3.03 16 15 C -0.13 -3.34 8.66 -38.81 -0.34 -3.67 16 16 C 0.10 2.55 5.55 -106.87 -0.59 1.96 16 17 C -0.47 -11.47 9.05 -37.73 -0.34 -11.81 16 18 H 0.08 1.83 7.89 -52.48 -0.41 1.42 16 19 C 0.08 1.80 5.18 -17.34 -0.09 1.71 16 20 N -0.80 -19.64 10.97 55.55 0.61 -19.03 16 21 Si 0.91 17.72 29.58 -169.99 -5.03 12.69 16 22 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 C -0.20 -4.47 7.57 -38.44 -0.29 -4.76 16 26 C 0.12 1.72 6.25 -2.98 -0.02 1.70 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.93 7.85 -51.93 -0.41 0.52 16 34 H 0.09 1.40 6.93 -51.93 -0.36 1.04 16 35 H 0.12 1.99 5.33 -51.93 -0.28 1.71 16 36 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 37 H 0.10 2.20 7.91 -52.48 -0.42 1.79 16 38 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 39 H 0.12 3.08 6.26 -52.49 -0.33 2.75 16 40 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 41 H 0.11 2.22 5.20 -52.49 -0.27 1.95 16 42 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 43 H 0.08 1.21 7.58 -51.93 -0.39 0.81 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -30.38 356.10 -7.83 -38.21 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.78 Total: 7.10 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.83 Total: -7.32 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.05 Total: -30.29 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.60 Total: -25.76 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.38 -7.83 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177197748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.009 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds