Wall clock time and date at job start Tue Mar 31 2020 12:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 117.00039 * 2 1 4 4 O 1.20828 * 119.99750 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00152 * 180.02562 * 3 2 1 6 6 C 1.53004 * 110.29274 * 60.68340 * 5 3 2 7 7 C 1.54617 * 110.41810 * 182.87679 * 5 3 2 8 8 C 1.54588 * 102.91490 * 140.63561 * 7 5 3 9 9 N 1.48119 * 103.42447 * 322.86889 * 8 7 5 10 10 C 1.34780 * 127.03478 * 219.29198 * 9 8 7 11 11 O 1.21542 * 119.99867 * 183.16178 * 10 9 8 12 12 C 1.47884 * 119.99752 * 3.15233 * 10 9 8 13 13 C 1.39924 * 120.02131 * 150.20660 * 12 10 9 14 14 C 1.38330 * 120.35791 * 180.02562 * 13 12 10 15 15 C 1.37748 * 120.41184 * 0.02562 * 14 13 12 16 16 C 1.40750 * 120.04205 * 359.95356 * 15 14 13 17 17 C 1.41441 * 120.17824 * 179.75133 * 16 15 14 18 18 H 1.08005 * 119.99864 * 152.70951 * 17 16 15 19 19 C 1.39932 * 119.99895 * 332.70989 * 17 16 15 20 20 N 1.30831 * 120.00164 * 345.20516 * 19 17 16 21 21 Si 1.86801 * 120.00093 * 165.20835 * 19 17 16 22 22 H 1.48505 * 109.46709 * 59.99776 * 21 19 17 23 23 H 1.48499 * 109.47345 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47186 * 300.00301 * 21 19 17 25 25 C 1.38997 * 120.02965 * 330.14316 * 12 10 9 26 26 C 1.47484 * 105.93079 * 39.02442 * 9 8 7 27 27 H 1.08999 * 109.47256 * 60.00182 * 1 2 3 28 28 H 1.09004 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46804 * 299.99757 * 1 2 3 30 30 H 1.09006 * 109.46732 * 299.32152 * 6 5 3 31 31 H 1.09001 * 109.46685 * 59.31404 * 6 5 3 32 32 H 1.08996 * 109.47671 * 179.32210 * 6 5 3 33 33 H 1.09000 * 110.73972 * 259.12659 * 7 5 3 34 34 H 1.08998 * 110.73536 * 22.44356 * 7 5 3 35 35 H 1.09000 * 110.61576 * 204.35731 * 8 7 5 36 36 H 1.08997 * 110.54633 * 81.35192 * 8 7 5 37 37 H 1.08005 * 119.81861 * 359.97438 * 13 12 10 38 38 H 1.07997 * 119.79003 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.98228 * 179.97438 * 15 14 13 40 40 H 0.96996 * 119.99796 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.19943 * 0.04169 * 25 12 10 42 42 H 1.08996 * 109.91410 * 94.14147 * 26 9 8 43 43 H 1.08995 * 109.91422 * 215.42091 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1325 0.6012 -1.2522 7 6 4.0292 2.7483 0.0723 8 6 5.2471 2.6813 1.0221 9 7 4.8484 1.6630 2.0211 10 6 5.0824 1.6924 3.3481 11 8 4.7461 0.7555 4.0454 12 6 5.7484 2.8648 3.9556 13 6 5.4648 3.2238 5.2779 14 6 6.0834 4.3194 5.8529 15 6 6.9850 5.0697 5.1307 16 6 7.2832 4.7237 3.7994 17 6 8.2046 5.4953 3.0536 18 1 8.7655 5.0395 2.2510 19 6 8.3893 6.8491 3.3555 20 7 7.5254 7.4741 4.1137 21 14 9.8693 7.7642 2.6760 22 1 9.8342 7.7290 1.1918 23 1 9.8341 9.1749 3.1383 24 1 11.1157 7.1159 3.1571 25 6 6.6575 3.6101 3.2139 26 6 4.1372 0.6133 1.2676 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8410 -0.4491 -1.2629 31 1 3.7398 1.0962 -2.1404 32 1 5.2199 0.6764 -1.2451 33 1 4.3253 3.1090 -0.9128 34 1 3.2470 3.3780 0.4960 35 1 5.4134 3.6459 1.5015 36 1 6.1373 2.3611 0.4807 37 1 4.7585 2.6428 5.8525 38 1 5.8574 4.5885 6.8741 39 1 7.4636 5.9240 5.5864 40 1 7.6537 8.4124 4.3232 41 1 6.8797 3.3364 2.1931 42 1 4.8313 -0.1806 0.9919 43 1 3.3260 0.2075 1.8719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177197748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:50 Heat of formation + Delta-G solvation = -109.725121 kcal Electronic energy + Delta-G solvation = -26634.700681 eV Core-core repulsion = 22837.189828 eV Total energy + Delta-G solvation = -3797.510853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.19112 -41.00914 -39.19898 -38.54430 -37.53389 -35.51037 -34.38009 -31.85257 -31.58041 -30.76629 -28.68226 -27.70688 -27.19110 -25.70004 -23.90871 -23.31918 -22.54570 -20.92582 -20.75405 -19.06218 -18.41740 -18.10113 -17.62881 -17.33431 -17.29370 -16.77761 -16.52350 -16.41926 -15.46122 -15.16932 -14.98453 -14.74457 -14.56440 -14.28325 -14.15101 -13.79259 -13.66881 -13.51694 -13.46145 -13.08279 -13.02013 -12.91771 -12.81559 -12.64601 -12.43471 -12.23609 -12.15557 -11.99700 -11.86996 -11.74987 -11.49546 -11.30746 -11.04522 -10.85265 -9.88381 -9.47114 -9.36865 -8.61228 -6.36163 0.41965 0.93250 0.99749 1.44328 1.52391 1.55951 1.57760 1.83686 2.02782 2.24748 2.76949 3.11320 3.36529 3.64112 3.69604 3.78469 3.92095 4.08701 4.24411 4.25483 4.27904 4.38034 4.47898 4.54672 4.62064 4.66688 4.68862 4.83109 4.85805 4.92772 4.94625 5.01422 5.06772 5.12384 5.20038 5.27579 5.31975 5.34722 5.53993 5.78809 5.98123 6.02813 6.19703 6.37329 6.58275 6.61234 6.91072 6.93747 7.08090 8.36321 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.003478 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.422105 B = 8048.168864 C = 8868.038001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.533 6.533 5 C -0.060 4.060 6 C -0.130 4.130 7 C -0.116 4.116 8 C 0.085 3.915 9 N -0.618 5.618 10 C 0.582 3.418 11 O -0.585 6.585 12 C -0.120 4.120 13 C -0.193 4.193 14 C -0.113 4.113 15 C -0.160 4.160 16 C 0.077 3.923 17 C -0.490 4.490 18 H 0.087 0.913 19 C 0.037 3.963 20 N -0.829 5.829 21 Si 0.981 3.019 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.262 1.262 25 C -0.190 4.190 26 C 0.119 3.881 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.288 0.712 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 -9.699 -13.474 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.422 6.422 5 C -0.062 4.062 6 C -0.187 4.187 7 C -0.154 4.154 8 C -0.036 4.036 9 N -0.351 5.351 10 C 0.374 3.626 11 O -0.467 6.467 12 C -0.123 4.123 13 C -0.213 4.213 14 C -0.131 4.131 15 C -0.180 4.180 16 C 0.075 3.925 17 C -0.520 4.520 18 H 0.105 0.895 19 C -0.178 4.178 20 N -0.455 5.455 21 Si 0.803 3.197 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.187 1.187 25 C -0.210 4.210 26 C -0.003 4.003 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.324 -9.688 -12.932 17.352 hybrid contribution -0.107 0.795 0.480 0.935 sum -6.431 -8.892 -12.452 16.598 Atomic orbital electron populations 1.23580 0.74797 1.05889 1.02375 1.86497 1.24940 1.32312 1.83428 1.23823 0.92186 0.81341 0.70999 1.90659 1.67634 1.37458 1.46425 1.21527 0.86271 0.99213 0.99159 1.21928 1.03020 1.01245 0.92528 1.22841 0.97302 0.92975 1.02247 1.23179 0.98289 0.93363 0.88802 1.48657 1.56264 1.24473 1.05662 1.18382 0.77572 0.86320 0.80295 1.90652 1.55309 1.38885 1.61893 1.19490 1.01138 0.96155 0.95545 1.20582 1.05685 1.00385 0.94643 1.20873 0.97632 0.95288 0.99330 1.21532 1.00948 1.00733 0.94808 1.17903 0.91291 0.91552 0.91789 1.19792 1.21009 0.94700 1.16464 0.89472 1.26723 0.98686 0.98547 0.93863 1.69847 1.33276 1.12032 1.30339 0.85248 0.77928 0.76822 0.79746 1.17879 1.19901 1.18667 1.21745 1.00570 0.99333 0.99365 1.22126 0.97038 0.90732 0.90437 0.91312 0.84678 0.92947 0.89851 0.90302 0.88542 0.85654 0.91653 0.89165 0.87223 0.88091 0.86481 0.87358 0.90144 0.84866 0.87452 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -7.65 10.44 -51.35 -0.54 -8.19 16 3 C 0.47 11.98 6.38 71.23 0.45 12.43 16 4 O -0.53 -16.80 15.21 21.96 0.33 -16.47 16 5 C -0.06 -1.27 0.91 -52.04 -0.05 -1.32 16 6 C -0.13 -1.64 8.16 71.98 0.59 -1.05 16 7 C -0.12 -2.70 5.94 31.69 0.19 -2.51 16 8 C 0.09 2.34 5.24 86.61 0.45 2.79 16 9 N -0.62 -20.73 3.29 -813.46 -2.68 -23.41 16 10 C 0.58 25.06 7.64 86.80 0.66 25.72 16 11 O -0.59 -28.13 17.06 -3.85 -0.07 -28.20 16 12 C -0.12 -5.58 5.69 -20.13 -0.11 -5.70 16 13 C -0.19 -9.18 9.60 22.70 0.22 -8.96 16 14 C -0.11 -5.34 10.01 22.18 0.22 -5.12 16 15 C -0.16 -8.22 8.66 22.77 0.20 -8.02 16 16 C 0.08 3.90 5.55 -21.32 -0.12 3.79 16 17 C -0.49 -24.21 9.05 23.47 0.21 -24.00 16 18 H 0.09 4.01 7.89 -2.91 -0.02 3.98 16 19 C 0.04 1.73 5.18 85.25 0.44 2.17 16 20 N -0.83 -41.33 10.97 21.82 0.24 -41.09 16 21 Si 0.98 35.67 29.58 68.60 2.03 37.70 16 22 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 23 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 24 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 25 C -0.19 -8.70 7.57 23.01 0.17 -8.52 16 26 C 0.12 3.12 6.25 86.53 0.54 3.67 16 27 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 28 H 0.14 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 30 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.13 2.10 7.85 -2.39 -0.02 2.08 16 34 H 0.06 1.93 6.93 -2.39 -0.02 1.92 16 35 H 0.09 3.02 5.33 -2.39 -0.01 3.01 16 36 H 0.11 2.34 8.04 -2.39 -0.02 2.32 16 37 H 0.10 4.66 7.91 -2.91 -0.02 4.64 16 38 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 39 H 0.11 5.73 6.26 -2.91 -0.02 5.71 16 40 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 41 H 0.13 5.28 5.20 -2.91 -0.02 5.27 16 42 H 0.11 2.29 7.68 -2.39 -0.02 2.27 16 43 H 0.06 1.83 7.58 -2.39 -0.02 1.81 16 Total: -1.00 -68.07 356.10 5.62 -62.45 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 1.03 Total: 30.22 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 5.27 Total: -13.01 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -2.44 Total: -64.50 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -0.27 Total: -52.85 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -68.07 5.62 -62.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177197748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.279 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds