Wall clock time and date at job start Tue Mar 31 2020 10:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 119.99991 * 2 1 4 4 H 1.48501 * 109.47465 * 239.99628 * 3 2 1 5 5 H 1.48504 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47207 * 119.99246 * 3 2 1 7 7 C 1.39927 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00253 * 194.20437 * 7 2 1 9 9 C 1.41440 * 120.00181 * 14.20477 * 7 2 1 10 10 C 1.40783 * 120.17591 * 27.87956 * 9 7 2 11 11 C 1.37713 * 120.04138 * 180.27738 * 10 9 7 12 12 C 1.38374 * 120.41034 * 359.44877 * 11 10 9 13 13 C 1.39882 * 120.35899 * 0.27744 * 12 11 10 14 14 C 1.47879 * 120.02805 * 179.97438 * 13 12 11 15 15 O 1.21549 * 120.00105 * 41.34809 * 14 13 12 16 16 N 1.34777 * 119.99936 * 221.34895 * 14 13 12 17 17 C 1.46926 * 120.63619 * 175.62587 * 16 14 13 18 18 C 1.52759 * 109.05960 * 233.74975 * 17 16 14 19 19 C 1.53063 * 109.37936 * 305.41199 * 18 17 16 20 20 C 1.52966 * 109.51535 * 60.98793 * 19 18 17 21 21 C 1.46952 * 120.64285 * 355.90897 * 16 14 13 22 22 O 1.43673 * 109.46186 * 59.08556 * 20 19 18 23 23 C 1.44802 * 104.78317 * 95.64257 * 22 20 19 24 24 C 1.54915 * 101.73199 * 36.03758 * 23 22 20 25 25 O 1.43273 * 109.70184 * 178.51316 * 20 19 18 26 26 C 1.39041 * 119.94530 * 0.02562 * 13 12 11 27 27 H 0.96999 * 119.99855 * 0.02562 * 1 2 3 28 28 H 1.08006 * 119.97989 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.79521 * 179.73094 * 11 10 9 30 30 H 1.07996 * 119.82452 * 180.25349 * 12 11 10 31 31 H 1.08999 * 109.57916 * 353.59959 * 17 16 14 32 32 H 1.08998 * 109.57826 * 113.99338 * 17 16 14 33 33 H 1.08997 * 109.56410 * 185.37635 * 18 17 16 34 34 H 1.09003 * 109.38836 * 65.33477 * 18 17 16 35 35 H 1.08998 * 109.46096 * 300.97984 * 19 18 17 36 36 H 1.08990 * 109.45802 * 181.00137 * 19 18 17 37 37 H 1.09004 * 109.58993 * 246.39224 * 21 16 14 38 38 H 1.09003 * 109.59060 * 6.83298 * 21 16 14 39 39 H 1.08994 * 110.97634 * 277.92120 * 23 22 20 40 40 H 1.09009 * 111.00753 * 154.15928 * 23 22 20 41 41 H 1.09004 * 110.69563 * 206.10097 * 24 23 22 42 42 H 1.08999 * 110.69872 * 82.89178 * 24 23 22 43 43 H 1.08003 * 120.19748 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2773 2.7465 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0079 -1.2118 0.0005 8 1 3.0632 -1.2261 0.2301 9 6 1.3332 -2.4181 -0.2995 10 6 0.1991 -2.4061 -1.1336 11 6 -0.4591 -3.5815 -1.4193 12 6 -0.0066 -4.7817 -0.9002 13 6 1.1218 -4.8141 -0.0742 14 6 1.5988 -6.1008 0.4770 15 8 1.6115 -7.0944 -0.2230 16 7 2.0193 -6.1717 1.7555 17 6 2.4055 -7.4603 2.3463 18 6 1.6161 -7.6742 3.6364 19 6 1.8236 -6.4743 4.5637 20 6 1.3110 -5.2055 3.8802 21 6 2.0944 -4.9626 2.5874 22 8 -0.0838 -5.3584 3.5713 23 6 -0.7779 -4.7368 4.6797 24 6 0.1574 -3.5468 5.0096 25 8 1.4716 -4.0851 4.7586 26 6 1.7941 -3.6354 0.2290 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1573 -1.4738 -1.5464 29 1 -1.3313 -3.5670 -2.0561 30 1 -0.5276 -5.6984 -1.1337 31 1 2.1825 -8.2649 1.6455 32 1 3.4721 -7.4541 2.5708 33 1 1.9641 -8.5810 4.1312 34 1 0.5565 -7.7724 3.4002 35 1 2.8856 -6.3647 4.7836 36 1 1.2752 -6.6337 5.4920 37 1 3.1360 -4.7474 2.8261 38 1 1.6592 -4.1208 2.0488 39 1 -0.8532 -5.4201 5.5255 40 1 -1.7640 -4.3853 4.3756 41 1 0.0544 -3.2540 6.0546 42 1 -0.0455 -2.7029 4.3503 43 1 2.6660 -3.6557 0.8660 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178523008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:59 Heat of formation + Delta-G solvation = -91.127476 kcal Electronic energy + Delta-G solvation = -27921.943454 eV Core-core repulsion = 24125.239055 eV Total energy + Delta-G solvation = -3796.704399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87343 -39.32576 -37.22072 -36.23883 -34.86358 -33.70703 -32.66956 -30.96375 -29.95148 -29.54092 -27.91587 -25.63230 -25.28354 -23.45795 -22.73296 -22.01992 -20.80226 -20.35913 -18.96922 -17.59108 -16.83436 -16.74737 -16.02158 -15.54741 -15.49177 -15.28351 -14.91854 -14.81819 -14.26630 -14.09494 -13.57867 -13.54685 -13.18982 -12.93359 -12.83268 -12.63513 -12.52780 -12.33116 -12.02497 -11.72599 -11.68955 -11.32974 -11.21366 -11.01082 -10.92720 -10.84530 -10.71298 -10.51022 -10.25412 -10.08762 -9.72585 -9.52085 -9.26073 -8.96652 -8.27314 -7.55803 -7.47787 -6.80688 -4.46020 2.32761 2.72637 3.03503 3.06133 3.12729 3.16562 3.58408 3.71393 3.89656 4.01049 4.57304 4.61231 4.73195 4.79378 4.93821 5.02532 5.10312 5.24274 5.37333 5.44819 5.50501 5.56064 5.66465 5.71298 5.76203 5.80659 5.89400 5.96006 6.05893 6.16497 6.24631 6.27581 6.39184 6.72588 6.81783 6.90762 7.02995 7.16947 7.21369 7.35267 7.62611 7.78819 7.89704 7.95433 8.09641 8.49810 8.75661 8.78731 8.82655 10.14497 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.005264 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.696552 B = 5317.887092 C = 6430.123164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.105 3.895 10 C -0.135 4.135 11 C -0.113 4.113 12 C -0.176 4.176 13 C -0.107 4.107 14 C 0.575 3.425 15 O -0.554 6.554 16 N -0.602 5.602 17 C 0.109 3.891 18 C -0.127 4.127 19 C -0.136 4.136 20 C 0.246 3.754 21 C 0.082 3.918 22 O -0.353 6.353 23 C 0.014 3.986 24 C 0.021 3.979 25 O -0.375 6.375 26 C -0.201 4.201 27 H 0.281 0.719 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.141 0.859 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.112 -5.847 11.065 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.155 4.155 11 C -0.131 4.131 12 C -0.196 4.196 13 C -0.110 4.110 14 C 0.367 3.633 15 O -0.433 6.433 16 N -0.336 5.336 17 C -0.013 4.013 18 C -0.166 4.166 19 C -0.174 4.174 20 C 0.168 3.832 21 C -0.041 4.041 22 O -0.273 6.273 23 C -0.063 4.063 24 C -0.055 4.055 25 O -0.295 6.295 26 C -0.221 4.221 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.158 0.842 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.032 -6.244 10.599 12.302 hybrid contribution 0.157 0.879 0.421 0.987 sum 0.189 -5.364 11.020 12.258 Atomic orbital electron populations 1.69779 1.07459 1.29332 1.35976 1.25854 0.94767 1.01190 0.92208 0.86360 0.80100 0.80224 0.80021 1.18837 1.20363 1.18976 1.19495 0.96855 0.90594 1.42475 0.90369 1.17510 0.91614 0.91780 0.88809 1.21514 0.98071 0.96755 0.99141 1.20667 0.99177 0.92984 1.00307 1.20346 0.98765 0.96941 1.03561 1.19242 0.98966 0.91189 1.01561 1.18913 0.74807 0.89234 0.80310 1.90660 1.55838 1.38213 1.58590 1.47777 1.66641 1.07575 1.11649 1.21460 0.98038 0.86942 0.94896 1.21765 1.02144 0.97205 0.95463 1.22104 1.02329 0.94164 0.98822 1.23643 0.83400 0.86273 0.89896 1.22734 1.00355 0.90620 0.90359 1.89381 1.16450 1.78927 1.42556 1.24357 0.98220 0.93424 0.90260 1.24229 0.81464 0.97331 1.02519 1.88839 1.28070 1.45880 1.66725 1.21277 1.03295 0.92124 1.05366 0.90795 0.86106 0.88627 0.88589 0.88892 0.91863 0.90512 0.90664 0.90248 0.91324 0.89952 0.84191 0.91266 0.87399 0.88533 0.89719 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.67 10.97 55.55 0.61 -19.06 16 2 C 0.08 1.84 5.19 -17.35 -0.09 1.75 16 3 Si 0.91 17.98 29.58 -169.99 -5.03 12.96 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.67 9.05 -37.73 -0.34 -12.01 16 8 H 0.08 1.89 7.89 -52.48 -0.41 1.48 16 9 C 0.11 2.67 5.54 -106.87 -0.59 2.08 16 10 C -0.14 -3.38 8.66 -38.81 -0.34 -3.72 16 11 C -0.11 -2.62 10.01 -39.72 -0.40 -3.01 16 12 C -0.18 -4.12 9.65 -38.92 -0.38 -4.50 16 13 C -0.11 -2.49 5.33 -105.04 -0.56 -3.05 16 14 C 0.58 12.60 7.34 -12.31 -0.09 12.51 16 15 O -0.55 -13.22 16.37 5.32 0.09 -13.13 16 16 N -0.60 -10.92 2.93 -174.16 -0.51 -11.43 16 17 C 0.11 1.60 6.39 -3.93 -0.03 1.57 16 18 C -0.13 -1.57 5.93 -26.82 -0.16 -1.73 16 19 C -0.14 -1.70 5.27 -26.72 -0.14 -1.84 16 20 C 0.25 3.79 1.05 -26.69 -0.03 3.76 16 21 C 0.08 1.43 4.42 -3.74 -0.02 1.42 16 22 O -0.35 -5.82 10.20 -59.04 -0.60 -6.43 16 23 C 0.01 0.17 7.91 38.17 0.30 0.47 16 24 C 0.02 0.26 8.08 38.17 0.31 0.57 16 25 O -0.37 -5.70 10.87 -59.04 -0.64 -6.35 16 26 C -0.20 -4.72 7.07 -38.44 -0.27 -4.99 16 27 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 28 H 0.12 3.09 6.27 -52.48 -0.33 2.76 16 29 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 30 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.09 1.45 7.03 -51.93 -0.36 1.08 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.05 7.63 -51.93 -0.40 0.66 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.14 2.85 3.95 -51.93 -0.21 2.64 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.11 1.17 8.14 -51.92 -0.42 0.75 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.11 2.31 6.11 -52.48 -0.32 1.99 16 LS Contribution 345.68 15.07 5.21 5.21 Total: -1.00 -29.51 345.68 -9.51 -39.01 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.81 Total: 9.95 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.81 Total: -10.73 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: 0.10 Total: -30.49 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -1.16 Total: -25.91 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.51 -9.51 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178523008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.113 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds