Wall clock time and date at job start Tue Mar 31 2020 12:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33464 * 118.45794 * 2 1 4 4 C 1.41795 * 118.78563 * 0.41155 * 3 2 1 5 5 O 1.21747 * 119.99902 * 107.75548 * 4 3 2 6 6 N 1.34770 * 120.00258 * 287.75157 * 4 3 2 7 7 C 1.46503 * 120.00288 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47267 * 179.97438 * 7 6 4 9 9 C 1.38299 * 119.93032 * 269.72862 * 8 7 6 10 10 C 1.38104 * 120.06861 * 179.72644 * 9 8 7 11 11 C 1.38880 * 119.92685 * 0.56581 * 10 9 8 12 12 O 1.35752 * 120.07036 * 179.68332 * 11 10 9 13 13 C 1.34832 * 117.00437 * 173.96530 * 12 11 10 14 14 H 1.08001 * 119.99560 * 5.10765 * 13 12 11 15 15 C 1.38649 * 120.00079 * 185.11567 * 13 12 11 16 16 N 1.31556 * 120.00224 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00045 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47106 * 59.99675 * 17 15 13 19 19 H 1.48494 * 109.46854 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46892 * 299.99720 * 17 15 13 21 21 C 1.38882 * 119.86387 * 359.70537 * 11 10 9 22 22 C 1.38096 * 119.93126 * 0.02562 * 21 11 10 23 23 C 1.50416 * 122.42117 * 180.68820 * 3 2 1 24 24 C 1.53394 * 109.46694 * 341.87268 * 23 3 2 25 25 C 1.53484 * 108.10526 * 47.73970 * 24 23 3 26 26 O 1.34349 * 118.46201 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47312 * 84.61830 * 1 2 3 28 28 H 1.08998 * 109.47117 * 204.61552 * 1 2 3 29 29 H 1.09001 * 109.47433 * 324.62196 * 1 2 3 30 30 H 0.97004 * 120.00121 * 0.02562 * 6 4 3 31 31 H 1.08994 * 109.47134 * 59.99666 * 7 6 4 32 32 H 1.09006 * 109.46521 * 299.99921 * 7 6 4 33 33 H 1.08001 * 119.96634 * 359.97156 * 9 8 7 34 34 H 1.07994 * 120.03770 * 180.26861 * 10 9 8 35 35 H 0.97004 * 120.00469 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.03264 * 179.97438 * 21 11 10 37 37 H 1.08000 * 119.96367 * 180.02562 * 22 21 11 38 38 H 1.08991 * 109.45340 * 102.08425 * 23 3 2 39 39 H 1.09006 * 109.45162 * 222.02185 * 23 3 2 40 40 H 1.08999 * 109.93889 * 287.99844 * 24 23 3 41 41 H 1.09004 * 109.66231 * 167.31217 * 24 23 3 42 42 H 1.08992 * 109.70309 * 177.41694 * 25 24 23 43 43 H 1.08993 * 109.70166 * 56.79744 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1430 1.1734 0.0000 4 6 1.3758 2.3658 0.0089 5 8 1.3232 3.0483 1.0158 6 7 0.7049 2.7438 -1.0971 7 6 -0.0873 3.9762 -1.0881 8 6 -0.7315 4.1691 -2.4367 9 6 -0.0709 4.8808 -3.4215 10 6 -0.6562 5.0546 -4.6602 11 6 -1.9145 4.5238 -4.9126 12 8 -2.4953 4.6984 -6.1271 13 6 -3.6587 4.0536 -6.3478 14 1 -4.1289 3.4995 -5.5488 15 6 -4.2514 4.1018 -7.6003 16 7 -3.6788 4.7770 -8.5734 17 14 -5.8629 3.2079 -7.9061 18 1 -6.9062 3.7426 -6.9947 19 1 -6.2838 3.4146 -9.3151 20 1 -5.6798 1.7564 -7.6515 21 6 -2.5777 3.8144 -3.9197 22 6 -1.9847 3.6393 -2.6849 23 6 3.6435 1.2774 -0.0153 24 6 4.2531 -0.0610 0.4207 25 6 3.5549 -1.1809 -0.3629 26 8 2.1473 -1.1811 -0.0005 27 1 -0.3634 0.0964 -1.0232 28 1 -0.3633 -0.9343 0.4280 29 1 -0.3634 0.8379 0.5950 30 1 0.7466 2.1999 -1.8993 31 1 0.5624 4.8241 -0.8715 32 1 -0.8601 3.9056 -0.3225 33 1 0.9054 5.2978 -3.2229 34 1 -0.1381 5.6067 -5.4303 35 1 -4.0932 4.8104 -9.4498 36 1 -3.5565 3.4008 -4.1129 37 1 -2.4998 3.0874 -1.9126 38 1 3.9801 1.5229 -1.0224 39 1 3.9601 2.0603 0.6740 40 1 4.0992 -0.2090 1.4895 41 1 5.3203 -0.0675 0.1988 42 1 4.0006 -2.1419 -0.1063 43 1 3.6589 -1.0008 -1.4328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178853841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:01 Heat of formation + Delta-G solvation = -70.657831 kcal Electronic energy + Delta-G solvation = -25579.632536 eV Core-core repulsion = 21783.815768 eV Total energy + Delta-G solvation = -3795.816768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89741 -39.39681 -38.90092 -36.86569 -34.39350 -34.28909 -33.40096 -32.35249 -30.30200 -29.85635 -28.45526 -26.36545 -25.54951 -24.49764 -23.17246 -22.06841 -21.31279 -20.63336 -19.12303 -18.08883 -17.79782 -17.03331 -16.49090 -16.06640 -15.74135 -15.12348 -14.96812 -14.64057 -14.52436 -14.15711 -14.11118 -13.71552 -13.63277 -13.56294 -13.32074 -13.18946 -12.82101 -12.77624 -12.58715 -12.43998 -12.08562 -11.70057 -11.54014 -11.41308 -11.20199 -10.98430 -10.86658 -10.81024 -10.71426 -10.51563 -9.87849 -9.44479 -8.92487 -8.91703 -8.49732 -8.29959 -7.33646 -6.53963 -4.13118 1.53265 2.08546 2.11569 2.70553 2.88365 3.08056 3.08341 3.11954 3.62196 3.89451 4.34082 4.36247 4.50918 4.55873 4.78968 4.94780 5.00551 5.05504 5.07223 5.16781 5.21683 5.27353 5.28458 5.33864 5.41948 5.54955 5.62974 5.66163 5.74152 5.79393 5.89982 5.93060 6.10201 6.11820 6.33577 6.55035 6.59477 6.79161 6.94242 7.05691 7.12897 7.25995 7.33748 7.64615 7.71145 7.90496 8.31709 8.91222 9.59387 10.63491 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.002552 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.062190 B =10969.848544 C =11533.482877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.138 3.862 3 C -0.298 4.298 4 C 0.575 3.425 5 O -0.550 6.550 6 N -0.718 5.718 7 C 0.177 3.823 8 C -0.213 4.213 9 C -0.055 4.055 10 C -0.195 4.195 11 C 0.160 3.840 12 O -0.173 6.173 13 C -0.394 4.394 14 H 0.093 0.907 15 C 0.041 3.959 16 N -0.860 5.860 17 Si 0.942 3.058 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.237 4.237 22 C -0.051 4.051 23 C -0.058 4.058 24 C -0.156 4.156 25 C 0.057 3.943 26 O -0.312 6.312 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.401 0.599 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.272 0.728 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.842 -10.671 14.050 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 C -0.303 4.303 4 C 0.362 3.638 5 O -0.429 6.429 6 N -0.370 5.370 7 C 0.055 3.945 8 C -0.215 4.215 9 C -0.073 4.073 10 C -0.214 4.214 11 C 0.105 3.895 12 O -0.076 6.076 13 C -0.470 4.470 14 H 0.110 0.890 15 C -0.164 4.164 16 N -0.494 5.494 17 Si 0.766 3.234 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.194 1.194 21 C -0.256 4.256 22 C -0.070 4.070 23 C -0.096 4.096 24 C -0.194 4.194 25 C -0.017 4.017 26 O -0.224 6.224 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.235 0.765 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.125 0.875 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.726 -10.169 14.343 21.133 hybrid contribution -0.619 -0.501 -0.651 1.028 sum 11.107 -10.670 13.692 20.608 Atomic orbital electron populations 1.21015 0.87955 1.04408 1.04278 1.20968 0.93726 0.84032 0.92324 1.19859 0.97208 0.93055 1.20158 1.16687 0.78737 0.85083 0.83260 1.90816 1.63801 1.55613 1.32652 1.46544 1.49601 1.26216 1.14641 1.19984 0.93701 0.86130 0.94698 1.19219 0.97393 1.09008 0.95854 1.20533 0.98128 0.96662 0.92025 1.20218 0.94989 1.08161 0.98075 1.19438 0.91502 0.92069 0.86452 1.83978 1.35683 1.60939 1.27001 1.21305 0.97041 1.30966 0.97696 0.88982 1.25312 0.99678 0.97137 0.94295 1.70025 1.38778 1.38072 1.02535 0.85769 0.80086 0.79450 0.78090 1.19417 1.20206 1.19416 1.21155 1.02542 1.07708 0.94184 1.20632 0.93890 0.96740 0.95752 1.20130 0.89506 0.97781 1.02148 1.22229 1.00695 0.95065 1.01392 1.23504 0.78197 1.00521 0.99452 1.86166 1.25133 1.28389 1.82733 0.89126 0.90029 0.89605 0.76458 0.91616 0.91607 0.87003 0.86410 0.91816 0.85442 0.87406 0.90806 0.90022 0.90329 0.89563 0.87483 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.24 36.01 0.33 -0.82 16 2 C 0.14 1.48 6.69 -35.98 -0.24 1.24 16 3 C -0.30 -3.45 5.37 -105.07 -0.56 -4.02 16 4 C 0.57 7.93 5.05 -14.90 -0.08 7.86 16 5 O -0.55 -9.65 17.09 5.15 0.09 -9.56 16 6 N -0.72 -9.09 5.20 -64.36 -0.33 -9.43 16 7 C 0.18 2.46 5.80 -5.19 -0.03 2.43 16 8 C -0.21 -3.36 5.25 -104.58 -0.55 -3.91 16 9 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 10 C -0.20 -3.90 9.99 -39.39 -0.39 -4.29 16 11 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 12 O -0.17 -4.78 9.76 0.04 0.00 -4.78 16 13 C -0.39 -10.64 9.49 30.88 0.29 -10.34 16 14 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 15 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -24.58 13.67 55.48 0.76 -23.83 16 17 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.24 -4.82 9.17 -39.40 -0.36 -5.18 16 22 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 23 C -0.06 -0.55 5.90 -27.82 -0.16 -0.71 16 24 C -0.16 -1.10 6.24 -26.28 -0.16 -1.26 16 25 C 0.06 0.40 7.15 37.41 0.27 0.66 16 26 O -0.31 -3.12 10.40 -14.88 -0.15 -3.28 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.92 6.96 -51.93 -0.36 0.56 16 30 H 0.40 4.65 8.42 -40.82 -0.34 4.30 16 31 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.13 2.61 5.65 -52.49 -0.30 2.32 16 37 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 363.88 15.07 5.48 5.48 Total: -1.00 -31.98 363.88 -7.86 -39.84 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.90 Total: 7.18 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.77 Total: -16.48 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.42 Total: -33.26 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.07 Total: -17.61 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.98 -7.86 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178853841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.820 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds