Wall clock time and date at job start Tue Mar 31 2020 12:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33464 * 118.45794 * 2 1 4 4 C 1.41795 * 118.78563 * 0.41155 * 3 2 1 5 5 O 1.21747 * 119.99902 * 107.75548 * 4 3 2 6 6 N 1.34770 * 120.00258 * 287.75157 * 4 3 2 7 7 C 1.46503 * 120.00288 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47267 * 179.97438 * 7 6 4 9 9 C 1.38299 * 119.93032 * 269.72862 * 8 7 6 10 10 C 1.38104 * 120.06861 * 179.72644 * 9 8 7 11 11 C 1.38880 * 119.92685 * 0.56581 * 10 9 8 12 12 O 1.35752 * 120.07036 * 179.68332 * 11 10 9 13 13 C 1.34832 * 117.00437 * 173.96530 * 12 11 10 14 14 H 1.08001 * 119.99560 * 5.10765 * 13 12 11 15 15 C 1.38649 * 120.00079 * 185.11567 * 13 12 11 16 16 N 1.31556 * 120.00224 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00045 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47106 * 59.99675 * 17 15 13 19 19 H 1.48494 * 109.46854 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46892 * 299.99720 * 17 15 13 21 21 C 1.38882 * 119.86387 * 359.70537 * 11 10 9 22 22 C 1.38096 * 119.93126 * 0.02562 * 21 11 10 23 23 C 1.50416 * 122.42117 * 180.68820 * 3 2 1 24 24 C 1.53394 * 109.46694 * 341.87268 * 23 3 2 25 25 C 1.53484 * 108.10526 * 47.73970 * 24 23 3 26 26 O 1.34349 * 118.46201 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47312 * 84.61830 * 1 2 3 28 28 H 1.08998 * 109.47117 * 204.61552 * 1 2 3 29 29 H 1.09001 * 109.47433 * 324.62196 * 1 2 3 30 30 H 0.97004 * 120.00121 * 0.02562 * 6 4 3 31 31 H 1.08994 * 109.47134 * 59.99666 * 7 6 4 32 32 H 1.09006 * 109.46521 * 299.99921 * 7 6 4 33 33 H 1.08001 * 119.96634 * 359.97156 * 9 8 7 34 34 H 1.07994 * 120.03770 * 180.26861 * 10 9 8 35 35 H 0.97004 * 120.00469 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.03264 * 179.97438 * 21 11 10 37 37 H 1.08000 * 119.96367 * 180.02562 * 22 21 11 38 38 H 1.08991 * 109.45340 * 102.08425 * 23 3 2 39 39 H 1.09006 * 109.45162 * 222.02185 * 23 3 2 40 40 H 1.08999 * 109.93889 * 287.99844 * 24 23 3 41 41 H 1.09004 * 109.66231 * 167.31217 * 24 23 3 42 42 H 1.08992 * 109.70309 * 177.41694 * 25 24 23 43 43 H 1.08993 * 109.70166 * 56.79744 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1430 1.1734 0.0000 4 6 1.3758 2.3658 0.0089 5 8 1.3232 3.0483 1.0158 6 7 0.7049 2.7438 -1.0971 7 6 -0.0873 3.9762 -1.0881 8 6 -0.7315 4.1691 -2.4367 9 6 -0.0709 4.8808 -3.4215 10 6 -0.6562 5.0546 -4.6602 11 6 -1.9145 4.5238 -4.9126 12 8 -2.4953 4.6984 -6.1271 13 6 -3.6587 4.0536 -6.3478 14 1 -4.1289 3.4995 -5.5488 15 6 -4.2514 4.1018 -7.6003 16 7 -3.6788 4.7770 -8.5734 17 14 -5.8629 3.2079 -7.9061 18 1 -6.9062 3.7426 -6.9947 19 1 -6.2838 3.4146 -9.3151 20 1 -5.6798 1.7564 -7.6515 21 6 -2.5777 3.8144 -3.9197 22 6 -1.9847 3.6393 -2.6849 23 6 3.6435 1.2774 -0.0153 24 6 4.2531 -0.0610 0.4207 25 6 3.5549 -1.1809 -0.3629 26 8 2.1473 -1.1811 -0.0005 27 1 -0.3634 0.0964 -1.0232 28 1 -0.3633 -0.9343 0.4280 29 1 -0.3634 0.8379 0.5950 30 1 0.7466 2.1999 -1.8993 31 1 0.5624 4.8241 -0.8715 32 1 -0.8601 3.9056 -0.3225 33 1 0.9054 5.2978 -3.2229 34 1 -0.1381 5.6067 -5.4303 35 1 -4.0932 4.8104 -9.4498 36 1 -3.5565 3.4008 -4.1129 37 1 -2.4998 3.0874 -1.9126 38 1 3.9801 1.5229 -1.0224 39 1 3.9601 2.0603 0.6740 40 1 4.0992 -0.2090 1.4895 41 1 5.3203 -0.0675 0.1988 42 1 4.0006 -2.1419 -0.1063 43 1 3.6589 -1.0008 -1.4328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178853841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:00 Heat of formation + Delta-G solvation = -91.286893 kcal Electronic energy + Delta-G solvation = -25580.527079 eV Core-core repulsion = 21783.815768 eV Total energy + Delta-G solvation = -3796.711311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77743 -40.84617 -40.08042 -38.48057 -35.64425 -35.05386 -34.35641 -34.07289 -31.83759 -31.26619 -29.19601 -27.76033 -26.90476 -25.69272 -23.94979 -23.64259 -22.35470 -22.01626 -20.05328 -19.82510 -18.89943 -18.56579 -17.38419 -17.03333 -16.61888 -16.48013 -16.33127 -16.05244 -15.69578 -15.53100 -15.40826 -15.08751 -14.79923 -14.53041 -14.35894 -14.26078 -14.12489 -13.92001 -13.63787 -13.40269 -13.25643 -13.15168 -13.01910 -12.54458 -12.38256 -12.25518 -12.21570 -12.14506 -11.77020 -11.55300 -11.20074 -11.02547 -10.77149 -10.06637 -9.80648 -9.31698 -9.00046 -8.47777 -6.16186 0.52915 0.58132 0.73346 1.36312 1.46063 1.52149 1.65486 2.17634 2.20347 2.47769 2.89051 3.19238 3.48982 3.65380 3.76252 3.86909 3.95668 4.03231 4.17775 4.19209 4.27710 4.33069 4.45601 4.46731 4.56014 4.57249 4.59968 4.70761 4.77081 4.81024 4.88645 4.94471 5.04403 5.14390 5.15649 5.21129 5.27054 5.31354 5.44418 5.53021 5.69452 5.75534 6.01698 6.16221 6.31792 6.58883 6.96978 7.24847 7.76326 8.74883 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.002552 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.062190 B =10969.848544 C =11533.482877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.147 3.853 3 C -0.321 4.321 4 C 0.583 3.417 5 O -0.590 6.590 6 N -0.709 5.709 7 C 0.182 3.818 8 C -0.181 4.181 9 C -0.045 4.045 10 C -0.205 4.205 11 C 0.122 3.878 12 O -0.229 6.229 13 C -0.414 4.414 14 H 0.104 0.896 15 C -0.021 4.021 16 N -0.920 5.920 17 Si 1.017 2.983 18 H -0.258 1.258 19 H -0.274 1.274 20 H -0.256 1.256 21 C -0.242 4.242 22 C -0.044 4.044 23 C -0.061 4.061 24 C -0.150 4.150 25 C 0.051 3.949 26 O -0.322 6.322 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.409 0.591 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.273 0.727 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.668 -12.716 16.167 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.098 3.902 3 C -0.325 4.325 4 C 0.372 3.628 5 O -0.472 6.472 6 N -0.360 5.360 7 C 0.059 3.941 8 C -0.182 4.182 9 C -0.064 4.064 10 C -0.224 4.224 11 C 0.071 3.929 12 O -0.136 6.136 13 C -0.490 4.490 14 H 0.122 0.878 15 C -0.219 4.219 16 N -0.558 5.558 17 Si 0.836 3.164 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.180 1.180 21 C -0.262 4.262 22 C -0.063 4.063 23 C -0.098 4.098 24 C -0.188 4.188 25 C -0.022 4.022 26 O -0.234 6.234 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.245 0.755 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.588 -12.237 16.500 24.093 hybrid contribution -0.617 0.105 -0.979 1.162 sum 11.970 -12.132 15.521 23.052 Atomic orbital electron populations 1.21056 0.87513 1.04569 1.04702 1.21095 0.94220 0.84086 0.90800 1.19876 0.98135 0.92349 1.22170 1.16931 0.78140 0.85233 0.82519 1.90799 1.65203 1.57123 1.34103 1.46368 1.49085 1.25736 1.14854 1.19909 0.94065 0.86940 0.93147 1.19486 0.96480 1.06048 0.96202 1.20868 0.99171 0.95761 0.90550 1.20437 0.94307 1.08129 0.99528 1.19990 0.92909 0.93857 0.86107 1.83949 1.36745 1.63400 1.29456 1.21802 0.97448 1.31272 0.98481 0.87841 1.26577 1.03636 0.97957 0.93741 1.70174 1.41278 1.41107 1.03209 0.84668 0.75110 0.78509 0.78098 1.18200 1.19818 1.17988 1.21249 1.02450 1.07458 0.95004 1.20942 0.94151 0.96208 0.94986 1.20189 0.88373 0.98846 1.02401 1.22217 1.02085 0.93647 1.00813 1.23826 0.76535 1.01810 1.00065 1.86160 1.26891 1.27926 1.82447 0.88181 0.88819 0.90811 0.75529 0.91167 0.90935 0.83732 0.86791 0.91804 0.86080 0.84077 0.89889 0.91488 0.91188 0.86978 0.84917 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 9.24 71.24 0.66 -1.41 16 2 C 0.15 2.83 6.69 24.60 0.16 2.99 16 3 C -0.32 -6.81 5.37 -20.16 -0.11 -6.92 16 4 C 0.58 14.95 5.05 85.12 0.43 15.38 16 5 O -0.59 -19.94 17.09 -4.50 -0.08 -20.02 16 6 N -0.71 -15.93 5.20 -475.73 -2.48 -18.40 16 7 C 0.18 4.45 5.80 85.63 0.50 4.94 16 8 C -0.18 -5.14 5.25 -19.83 -0.10 -5.24 16 9 C -0.05 -1.39 9.69 22.25 0.22 -1.18 16 10 C -0.20 -8.18 9.99 22.39 0.22 -7.96 16 11 C 0.12 5.77 6.65 22.58 0.15 5.92 16 12 O -0.23 -13.35 9.76 -22.79 -0.22 -13.57 16 13 C -0.41 -23.32 9.49 67.92 0.64 -22.68 16 14 H 0.10 5.28 5.21 -2.91 -0.02 5.27 16 15 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 16 N -0.92 -55.38 13.67 21.61 0.30 -55.09 16 17 Si 1.02 41.57 29.55 68.60 2.03 43.59 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 21 C -0.24 -9.79 9.17 22.39 0.21 -9.58 16 22 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 23 C -0.06 -1.03 5.90 29.89 0.18 -0.85 16 24 C -0.15 -1.71 6.24 30.89 0.19 -1.51 16 25 C 0.05 0.54 7.15 72.14 0.52 1.05 16 26 O -0.32 -5.59 10.40 -76.18 -0.79 -6.38 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.44 6.96 -2.39 -0.02 1.42 16 30 H 0.41 8.18 8.42 -92.71 -0.78 7.40 16 31 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 32 H 0.07 1.77 8.09 -2.38 -0.02 1.75 16 33 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 35 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 36 H 0.12 4.99 5.65 -2.91 -0.02 4.97 16 37 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.96 363.88 3.55 -70.41 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.26 Total: 28.38 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 4.54 Total: -28.92 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -2.18 Total: -73.49 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -1.09 Total: -39.97 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -73.96 3.55 -70.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178853841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.880 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds