Wall clock time and date at job start Tue Mar 31 2020 11:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99903 * 2 1 4 4 O 1.20829 * 120.00081 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00227 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47311 * 180.02562 * 5 3 2 7 7 C 1.36711 * 120.00125 * 270.00114 * 6 5 3 8 8 H 1.08001 * 119.99961 * 42.10168 * 7 6 5 9 9 C 1.39122 * 119.99861 * 222.09829 * 7 6 5 10 10 N 1.31322 * 120.00214 * 16.39944 * 9 7 6 11 11 Si 1.86803 * 120.00031 * 196.39468 * 9 7 6 12 12 H 1.48504 * 109.46903 * 60.00185 * 11 9 7 13 13 H 1.48499 * 109.47217 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47151 * 300.00453 * 11 9 7 15 15 C 1.34779 * 119.99500 * 90.00360 * 6 5 3 16 16 O 1.21762 * 119.99773 * 175.34511 * 15 6 5 17 17 C 1.46224 * 120.00527 * 355.34138 * 15 6 5 18 18 C 1.34975 * 120.00449 * 184.40643 * 17 15 6 19 19 C 1.47147 * 120.00202 * 185.37913 * 18 17 15 20 20 C 1.39876 * 120.16970 * 354.65554 * 19 18 17 21 21 C 1.37879 * 119.81812 * 180.02562 * 20 19 18 22 22 C 1.50696 * 119.91058 * 180.25223 * 21 20 19 23 23 C 1.38416 * 120.17484 * 359.97438 * 21 20 19 24 24 C 1.38412 * 120.35434 * 359.97438 * 23 21 20 25 25 C 1.50698 * 119.91322 * 180.02562 * 24 23 21 26 26 C 1.37879 * 120.17310 * 0.02698 * 24 23 21 27 27 H 1.08999 * 109.46878 * 59.99702 * 1 2 3 28 28 H 1.08999 * 109.46379 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46727 * 299.99200 * 1 2 3 30 30 H 1.09004 * 109.46980 * 60.00458 * 5 3 2 31 31 H 1.09003 * 109.47055 * 300.00691 * 5 3 2 32 32 H 0.96997 * 119.99987 * 184.89263 * 10 9 7 33 33 H 1.08007 * 119.99532 * 4.41114 * 17 15 6 34 34 H 1.07997 * 119.99645 * 5.37815 * 18 17 15 35 35 H 1.07993 * 120.09023 * 0.04212 * 20 19 18 36 36 H 1.08999 * 109.47206 * 269.72336 * 22 21 20 37 37 H 1.08992 * 109.47080 * 29.72865 * 22 21 20 38 38 H 1.09000 * 109.47099 * 149.72910 * 22 21 20 39 39 H 1.07994 * 119.82234 * 179.97438 * 23 21 20 40 40 H 1.08993 * 109.47310 * 90.00600 * 25 24 23 41 41 H 1.09006 * 109.46700 * 209.99921 * 25 24 23 42 42 H 1.08999 * 109.46859 * 329.99818 * 25 24 23 43 43 H 1.07998 * 120.09106 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1750 3.3361 -1.1834 8 1 3.4794 3.1971 -1.9979 9 6 5.2676 4.1832 -1.3387 10 7 6.2755 4.1155 -0.4996 11 14 5.3012 5.4169 -2.7411 12 1 4.1457 6.3412 -2.6149 13 1 6.5655 6.1939 -2.6867 14 1 5.2191 4.6958 -4.0367 15 6 4.1733 3.3252 1.1678 16 8 4.5997 4.4657 1.1701 17 6 3.8690 2.6559 2.4317 18 6 3.9759 3.3308 3.5957 19 6 3.7853 2.6276 4.8741 20 6 3.3841 1.2876 4.8864 21 6 3.2073 0.6359 6.0885 22 6 2.7806 -0.8093 6.1041 23 6 3.4262 1.3039 7.2809 24 6 3.8243 2.6295 7.2771 25 6 4.0604 3.3470 8.5811 26 6 4.0055 3.2953 6.0834 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 3.9557 0.7811 -0.8909 31 1 3.9565 0.7805 0.8891 32 1 7.0041 4.7525 -0.5643 33 1 3.5588 1.6213 2.4339 34 1 4.2012 4.3870 3.5887 35 1 3.2137 0.7650 3.9569 36 1 1.6923 -0.8666 6.1257 37 1 3.1531 -1.3077 5.2093 38 1 3.1877 -1.2988 6.9888 39 1 3.2855 0.7881 8.2192 40 1 5.1014 3.2245 8.8800 41 1 3.8404 4.4075 8.4573 42 1 3.4101 2.9283 9.3491 43 1 4.3158 4.3297 6.0820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180215234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:04 Heat of formation + Delta-G solvation = -64.875117 kcal Electronic energy + Delta-G solvation = -26247.939881 eV Core-core repulsion = 22452.373870 eV Total energy + Delta-G solvation = -3795.566011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.03371 -39.43309 -38.21342 -35.99218 -34.46548 -33.75490 -33.49873 -31.99839 -29.82573 -28.55320 -27.30745 -26.62167 -26.42278 -25.18300 -23.07023 -21.00615 -20.70998 -20.12252 -18.13760 -17.29410 -17.10846 -16.55227 -16.14105 -15.98042 -15.52296 -15.13980 -14.82541 -14.16906 -14.07578 -13.95684 -13.47668 -13.27221 -13.11717 -13.04659 -12.87276 -12.73795 -12.60209 -12.58283 -11.96868 -11.86106 -11.73790 -11.65727 -11.39742 -11.19476 -10.96672 -10.85989 -10.68155 -10.66345 -10.46311 -10.26596 -10.02357 -9.62599 -8.91846 -8.50331 -8.17020 -7.79008 -7.25560 -6.12285 -3.91166 0.98312 1.46782 2.54143 2.74467 3.06909 3.32686 3.38477 3.43213 3.95028 4.26852 4.72547 4.76717 4.81753 4.84295 5.03454 5.16422 5.20185 5.27698 5.29903 5.33284 5.35850 5.41265 5.50609 5.51597 5.55604 5.59447 5.63479 5.68575 5.74028 5.79414 5.82426 6.00470 6.08984 6.15294 6.29090 6.47755 6.60362 6.65558 6.75583 6.97858 7.07781 7.14566 7.57477 8.16102 8.30955 8.94053 9.07108 9.53854 10.19207 10.92649 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.004157 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.241051 B = 6734.182971 C = 8659.710383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.431 3.569 4 O -0.487 6.487 5 C 0.116 3.884 6 N -0.428 5.428 7 C -0.342 4.342 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.815 5.815 11 Si 0.914 3.086 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.496 3.504 16 O -0.515 6.515 17 C -0.157 4.157 18 C -0.086 4.086 19 C -0.034 4.034 20 C -0.121 4.121 21 C -0.083 4.083 22 C -0.113 4.113 23 C -0.130 4.130 24 C -0.085 4.085 25 C -0.112 4.112 26 C -0.115 4.115 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.267 0.733 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.399 -10.637 12.404 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.287 6.287 3 C 0.271 3.729 4 O -0.372 6.372 5 C -0.011 4.011 6 N -0.149 5.149 7 C -0.468 4.468 8 H 0.098 0.902 9 C -0.145 4.145 10 N -0.448 5.448 11 Si 0.740 3.260 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.287 3.713 16 O -0.392 6.392 17 C -0.179 4.179 18 C -0.107 4.107 19 C -0.034 4.034 20 C -0.139 4.139 21 C -0.083 4.083 22 C -0.170 4.170 23 C -0.148 4.148 24 C -0.085 4.085 25 C -0.169 4.169 26 C -0.133 4.133 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.174 -9.681 12.389 16.892 hybrid contribution -0.301 0.547 -0.687 0.928 sum -6.475 -9.134 11.702 16.196 Atomic orbital electron populations 1.23130 0.77703 1.02814 1.02234 1.86535 1.22517 1.34694 1.84933 1.25428 0.93695 0.81119 0.72701 1.90673 1.66726 1.36262 1.43491 1.21150 0.85450 0.89330 1.05216 1.42871 1.60123 1.05795 1.06097 1.19004 1.08055 1.28171 0.91589 0.90201 1.25208 0.93374 0.98550 0.97360 1.69859 1.06626 1.32843 1.35508 0.86253 0.77609 0.81151 0.80967 1.19980 1.21063 1.20194 1.17737 0.83929 0.86709 0.82965 1.90665 1.44357 1.18045 1.86159 1.23460 1.00458 0.99421 0.94527 1.22070 0.98756 1.00003 0.89843 1.19141 0.97700 0.93359 0.93237 1.21262 1.00895 0.94175 0.97575 1.19776 0.99359 0.96207 0.92967 1.20779 1.01393 0.92088 1.02698 1.20884 1.02385 0.94207 0.97296 1.19778 0.99335 0.94285 0.95106 1.20770 1.01942 1.00121 0.94045 1.21201 1.01153 0.99922 0.91069 0.92308 0.88743 0.92368 0.86677 0.88236 0.92297 0.87439 0.85140 0.85919 0.91328 0.91410 0.91731 0.86508 0.91285 0.91548 0.91786 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.72 10.57 -39.24 -0.41 -6.14 16 3 C 0.43 8.18 8.02 36.01 0.29 8.47 16 4 O -0.49 -11.09 16.18 -18.75 -0.30 -11.39 16 5 C 0.12 2.24 5.60 -5.19 -0.03 2.21 16 6 N -0.43 -10.84 2.00 -117.75 -0.24 -11.07 16 7 C -0.34 -9.48 9.27 -15.05 -0.14 -9.62 16 8 H 0.08 2.17 7.89 -52.49 -0.41 1.76 16 9 C 0.07 1.88 4.46 -17.44 -0.08 1.80 16 10 N -0.82 -24.04 11.20 55.50 0.62 -23.42 16 11 Si 0.91 21.99 29.59 -169.99 -5.03 16.96 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 15 C 0.50 13.02 6.97 -13.05 -0.09 12.93 16 16 O -0.51 -15.56 13.44 5.13 0.07 -15.49 16 17 C -0.16 -3.29 8.60 -37.54 -0.32 -3.62 16 18 C -0.09 -1.67 9.45 -37.13 -0.35 -2.02 16 19 C -0.03 -0.56 5.86 -105.06 -0.62 -1.17 16 20 C -0.12 -1.78 9.06 -39.10 -0.35 -2.13 16 21 C -0.08 -1.04 5.87 -104.69 -0.61 -1.66 16 22 C -0.11 -1.06 10.01 36.00 0.36 -0.70 16 23 C -0.13 -1.54 9.35 -39.45 -0.37 -1.91 16 24 C -0.09 -1.06 5.87 -104.69 -0.61 -1.67 16 25 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 26 C -0.12 -1.66 9.44 -39.10 -0.37 -2.03 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.12 2.03 8.04 -51.93 -0.42 1.61 16 31 H 0.10 1.63 6.25 -51.93 -0.32 1.31 16 32 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.11 1.92 4.31 -52.48 -0.23 1.69 16 34 H 0.13 2.68 7.55 -52.49 -0.40 2.28 16 35 H 0.12 1.71 6.19 -52.49 -0.32 1.38 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 42 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 43 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -35.44 370.37 -7.46 -42.90 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.88 Total: 2.36 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.87 Total: -0.30 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.39 Total: -34.49 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.65 Total: -33.02 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.44 -7.46 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180215234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.974 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds