Wall clock time and date at job start Tue Mar 31 2020 11:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99903 * 2 1 4 4 O 1.20829 * 120.00081 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00227 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47311 * 180.02562 * 5 3 2 7 7 C 1.36711 * 120.00125 * 270.00114 * 6 5 3 8 8 H 1.08001 * 119.99961 * 42.10168 * 7 6 5 9 9 C 1.39122 * 119.99861 * 222.09829 * 7 6 5 10 10 N 1.31322 * 120.00214 * 16.39944 * 9 7 6 11 11 Si 1.86803 * 120.00031 * 196.39468 * 9 7 6 12 12 H 1.48504 * 109.46903 * 60.00185 * 11 9 7 13 13 H 1.48499 * 109.47217 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47151 * 300.00453 * 11 9 7 15 15 C 1.34779 * 119.99500 * 90.00360 * 6 5 3 16 16 O 1.21762 * 119.99773 * 175.34511 * 15 6 5 17 17 C 1.46224 * 120.00527 * 355.34138 * 15 6 5 18 18 C 1.34975 * 120.00449 * 184.40643 * 17 15 6 19 19 C 1.47147 * 120.00202 * 185.37913 * 18 17 15 20 20 C 1.39876 * 120.16970 * 354.65554 * 19 18 17 21 21 C 1.37879 * 119.81812 * 180.02562 * 20 19 18 22 22 C 1.50696 * 119.91058 * 180.25223 * 21 20 19 23 23 C 1.38416 * 120.17484 * 359.97438 * 21 20 19 24 24 C 1.38412 * 120.35434 * 359.97438 * 23 21 20 25 25 C 1.50698 * 119.91322 * 180.02562 * 24 23 21 26 26 C 1.37879 * 120.17310 * 0.02698 * 24 23 21 27 27 H 1.08999 * 109.46878 * 59.99702 * 1 2 3 28 28 H 1.08999 * 109.46379 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46727 * 299.99200 * 1 2 3 30 30 H 1.09004 * 109.46980 * 60.00458 * 5 3 2 31 31 H 1.09003 * 109.47055 * 300.00691 * 5 3 2 32 32 H 0.96997 * 119.99987 * 184.89263 * 10 9 7 33 33 H 1.08007 * 119.99532 * 4.41114 * 17 15 6 34 34 H 1.07997 * 119.99645 * 5.37815 * 18 17 15 35 35 H 1.07993 * 120.09023 * 0.04212 * 20 19 18 36 36 H 1.08999 * 109.47206 * 269.72336 * 22 21 20 37 37 H 1.08992 * 109.47080 * 29.72865 * 22 21 20 38 38 H 1.09000 * 109.47099 * 149.72910 * 22 21 20 39 39 H 1.07994 * 119.82234 * 179.97438 * 23 21 20 40 40 H 1.08993 * 109.47310 * 90.00600 * 25 24 23 41 41 H 1.09006 * 109.46700 * 209.99921 * 25 24 23 42 42 H 1.08999 * 109.46859 * 329.99818 * 25 24 23 43 43 H 1.07998 * 120.09106 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1750 3.3361 -1.1834 8 1 3.4794 3.1971 -1.9979 9 6 5.2676 4.1832 -1.3387 10 7 6.2755 4.1155 -0.4996 11 14 5.3012 5.4169 -2.7411 12 1 4.1457 6.3412 -2.6149 13 1 6.5655 6.1939 -2.6867 14 1 5.2191 4.6958 -4.0367 15 6 4.1733 3.3252 1.1678 16 8 4.5997 4.4657 1.1701 17 6 3.8690 2.6559 2.4317 18 6 3.9759 3.3308 3.5957 19 6 3.7853 2.6276 4.8741 20 6 3.3841 1.2876 4.8864 21 6 3.2073 0.6359 6.0885 22 6 2.7806 -0.8093 6.1041 23 6 3.4262 1.3039 7.2809 24 6 3.8243 2.6295 7.2771 25 6 4.0604 3.3470 8.5811 26 6 4.0055 3.2953 6.0834 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 3.9557 0.7811 -0.8909 31 1 3.9565 0.7805 0.8891 32 1 7.0041 4.7525 -0.5643 33 1 3.5588 1.6213 2.4339 34 1 4.2012 4.3870 3.5887 35 1 3.2137 0.7650 3.9569 36 1 1.6923 -0.8666 6.1257 37 1 3.1531 -1.3077 5.2093 38 1 3.1877 -1.2988 6.9888 39 1 3.2855 0.7881 8.2192 40 1 5.1014 3.2245 8.8800 41 1 3.8404 4.4075 8.4573 42 1 3.4101 2.9283 9.3491 43 1 4.3158 4.3297 6.0820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180215234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:04 Heat of formation + Delta-G solvation = -85.198236 kcal Electronic energy + Delta-G solvation = -26248.821158 eV Core-core repulsion = 22452.373870 eV Total energy + Delta-G solvation = -3796.447287 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55463 -40.55701 -39.97295 -37.47833 -36.19904 -35.31525 -34.42007 -33.95754 -31.17967 -30.03531 -28.18568 -27.82180 -27.56807 -26.91943 -24.64684 -22.48202 -21.71451 -21.64264 -19.74780 -18.95246 -18.67110 -18.10840 -17.40775 -17.29759 -17.12670 -16.62166 -16.40332 -15.76725 -15.34890 -15.12290 -14.90546 -14.50631 -14.46049 -14.23941 -14.18029 -13.95535 -13.87725 -13.39254 -13.31774 -13.18341 -12.97324 -12.84859 -12.83107 -12.80434 -12.71782 -12.50831 -12.14795 -12.00929 -11.81942 -11.74220 -11.65166 -10.94291 -10.93117 -10.19721 -9.50372 -9.30105 -9.10196 -8.21567 -6.04780 -0.30989 0.44233 1.15722 1.24500 1.37206 1.45492 1.49482 1.72313 2.33618 2.76599 2.94691 3.09050 3.22889 3.72668 3.75426 3.91551 3.99482 4.05519 4.21064 4.21984 4.34966 4.37155 4.37662 4.43373 4.47107 4.56238 4.67427 4.71878 4.72561 4.84856 4.89008 4.90001 5.06986 5.15417 5.22950 5.33681 5.36866 5.39320 5.45637 5.64315 5.65925 5.74057 6.09689 6.13480 6.81383 6.91702 7.09057 7.52658 8.22292 8.83025 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.004157 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.241051 B = 6734.182971 C = 8659.710383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.444 3.556 4 O -0.532 6.532 5 C 0.111 3.889 6 N -0.444 5.444 7 C -0.362 4.362 8 H 0.077 0.923 9 C 0.020 3.980 10 N -0.851 5.851 11 Si 0.970 3.030 12 H -0.287 1.287 13 H -0.283 1.283 14 H -0.252 1.252 15 C 0.486 3.514 16 O -0.574 6.574 17 C -0.186 4.186 18 C -0.057 4.057 19 C -0.068 4.068 20 C -0.128 4.128 21 C -0.086 4.086 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.088 4.088 25 C -0.111 4.111 26 C -0.126 4.126 27 H 0.053 0.947 28 H 0.140 0.860 29 H 0.056 0.944 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.261 0.739 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.151 0.849 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 -13.500 14.646 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.286 3.714 4 O -0.420 6.420 5 C -0.015 4.015 6 N -0.164 5.164 7 C -0.489 4.489 8 H 0.095 0.905 9 C -0.188 4.188 10 N -0.485 5.485 11 Si 0.795 3.205 12 H -0.213 1.213 13 H -0.208 1.208 14 H -0.176 1.176 15 C 0.278 3.722 16 O -0.456 6.456 17 C -0.207 4.207 18 C -0.078 4.078 19 C -0.068 4.068 20 C -0.146 4.146 21 C -0.086 4.086 22 C -0.168 4.168 23 C -0.137 4.137 24 C -0.088 4.088 25 C -0.168 4.168 26 C -0.144 4.144 27 H 0.072 0.928 28 H 0.158 0.842 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.168 0.832 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.414 -12.625 14.613 20.686 hybrid contribution -0.068 1.309 -1.118 1.722 sum -7.482 -11.316 13.495 19.135 Atomic orbital electron populations 1.23520 0.75316 1.05700 1.02008 1.86503 1.24628 1.32218 1.84014 1.25071 0.93366 0.81398 0.71566 1.90666 1.67550 1.37944 1.45819 1.21359 0.86159 0.86397 1.07565 1.42987 1.60141 1.08027 1.05226 1.19199 1.07872 1.29457 0.92398 0.90499 1.26025 0.93126 1.00084 0.99540 1.69962 1.07264 1.33598 1.37710 0.85382 0.76888 0.78878 0.79379 1.21288 1.20808 1.17581 1.18561 0.82487 0.86409 0.84760 1.90606 1.47058 1.20569 1.87342 1.23188 1.04160 1.00919 0.92430 1.22193 0.95206 0.98999 0.91384 1.19052 1.01119 0.94512 0.92090 1.21410 1.00800 0.93428 0.98927 1.20177 0.98322 0.97836 0.92258 1.20851 1.02213 0.89834 1.03934 1.21368 0.99967 0.93890 0.98509 1.20164 0.98269 0.94851 0.95524 1.20837 1.03093 1.00069 0.92753 1.21380 1.01278 1.00276 0.91491 0.92812 0.84221 0.92476 0.84973 0.85156 0.92955 0.84353 0.87506 0.85602 0.90146 0.91048 0.89722 0.83153 0.90231 0.91352 0.89674 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -10.33 10.57 -51.36 -0.54 -10.87 16 3 C 0.44 16.65 8.02 71.24 0.57 17.22 16 4 O -0.53 -24.58 16.18 21.96 0.36 -24.23 16 5 C 0.11 4.27 5.60 85.63 0.48 4.75 16 6 N -0.44 -23.23 2.00 -644.62 -1.29 -24.52 16 7 C -0.36 -20.83 9.27 84.15 0.78 -20.05 16 8 H 0.08 4.33 7.89 -2.91 -0.02 4.30 16 9 C 0.02 1.17 4.46 84.98 0.38 1.55 16 10 N -0.85 -52.58 11.20 21.69 0.24 -52.34 16 11 Si 0.97 46.70 29.59 68.60 2.03 48.73 16 12 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.25 -10.98 7.11 99.48 0.71 -10.27 16 15 C 0.49 26.74 6.97 86.32 0.60 27.34 16 16 O -0.57 -36.95 13.44 -4.55 -0.06 -37.01 16 17 C -0.19 -8.05 8.60 23.60 0.20 -7.85 16 18 C -0.06 -2.31 9.45 23.86 0.23 -2.09 16 19 C -0.07 -2.20 5.86 -20.15 -0.12 -2.32 16 20 C -0.13 -3.54 9.06 22.58 0.20 -3.34 16 21 C -0.09 -1.87 5.87 -19.91 -0.12 -1.99 16 22 C -0.11 -1.64 10.01 71.23 0.71 -0.93 16 23 C -0.12 -2.37 9.35 22.35 0.21 -2.16 16 24 C -0.09 -1.95 5.87 -19.91 -0.12 -2.07 16 25 C -0.11 -1.69 10.01 71.24 0.71 -0.98 16 26 C -0.13 -3.56 9.44 22.58 0.21 -3.35 16 27 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 28 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 30 H 0.13 4.58 8.04 -2.39 -0.02 4.56 16 31 H 0.13 4.14 6.25 -2.39 -0.01 4.13 16 32 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.14 4.92 4.31 -2.91 -0.01 4.91 16 34 H 0.11 4.75 7.55 -2.91 -0.02 4.72 16 35 H 0.13 3.30 6.19 -2.91 -0.02 3.28 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 38 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.03 8.08 -2.38 -0.02 1.01 16 42 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 43 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -82.67 370.37 7.89 -74.77 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.02 Total: 19.92 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.14 Total: 5.55 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.05 Total: -76.86 kcal Atomic # 8 Polarization: -71.86 SS G_CDS: -0.25 Total: -72.11 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -82.67 7.89 -74.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180215234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.424 kcal (2) G-P(sol) polarization free energy of solvation -82.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds