Wall clock time and date at job start Tue Mar 31 2020 11:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46836 * 300.00411 * 3 2 1 6 6 H 1.48502 * 109.47073 * 60.00110 * 3 2 1 7 7 C 1.38691 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00014 * 179.97438 * 7 2 1 9 9 O 1.34819 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.35516 * 117.00186 * 185.07923 * 9 7 2 11 11 C 1.38832 * 120.16318 * 354.34435 * 10 9 7 12 12 C 1.38026 * 120.07252 * 180.02562 * 11 10 9 13 13 C 1.38563 * 120.40401 * 359.97438 * 12 11 10 14 14 C 1.37835 * 120.32117 * 0.04220 * 13 12 11 15 15 C 1.39656 * 119.91989 * 0.25430 * 14 13 12 16 16 C 1.47532 * 120.19841 * 179.69785 * 15 14 13 17 17 O 1.21599 * 120.00303 * 142.65511 * 16 15 14 18 18 N 1.34774 * 120.00253 * 322.66094 * 16 15 14 19 19 C 1.47156 * 120.98115 * 357.71786 * 18 16 15 20 20 C 1.53294 * 108.38516 * 230.51311 * 19 18 16 21 21 O 1.42962 * 109.22310 * 307.69712 * 20 19 18 22 22 C 1.42959 * 114.16501 * 62.57923 * 21 20 19 23 23 C 1.47146 * 120.98375 * 177.43782 * 18 16 15 24 24 H 1.09006 * 109.68209 * 249.21182 * 23 18 16 25 25 C 1.52999 * 109.68613 * 9.76134 * 23 18 16 26 26 C 1.52998 * 117.50325 * 255.61451 * 25 23 18 27 27 C 1.52992 * 117.50556 * 186.98848 * 25 23 18 28 28 H 0.97004 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.96073 * 0.04659 * 11 10 9 30 30 H 1.08003 * 119.79596 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.83973 * 180.02562 * 13 12 11 32 32 H 1.08007 * 120.03342 * 179.97438 * 14 13 12 33 33 H 1.08995 * 109.67996 * 350.24060 * 19 18 16 34 34 H 1.08997 * 109.67932 * 110.75093 * 19 18 16 35 35 H 1.09005 * 109.50944 * 67.62239 * 20 19 18 36 36 H 1.08998 * 109.50899 * 187.77111 * 20 19 18 37 37 H 1.09001 * 109.51569 * 57.34485 * 22 21 20 38 38 H 1.09002 * 109.51018 * 177.43974 * 22 21 20 39 39 H 1.09006 * 115.54561 * 41.31810 * 25 23 18 40 40 H 1.09003 * 117.49585 * 359.97438 * 26 25 23 41 41 H 1.09004 * 117.50267 * 145.01382 * 26 25 23 42 42 H 1.09000 * 117.50660 * 214.98351 * 27 25 23 43 43 H 1.09003 * 117.49718 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0086 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0010 9 8 1.3346 -2.3687 -0.0005 10 6 2.0686 -3.5029 0.1058 11 6 3.4554 -3.4403 0.0905 12 6 4.2012 -4.5967 0.1984 13 6 3.5745 -5.8262 0.3231 14 6 2.1987 -5.9074 0.3399 15 6 1.4309 -4.7465 0.2254 16 6 -0.0422 -4.8270 0.2358 17 8 -0.6943 -3.9651 0.7929 18 7 -0.6652 -5.8561 -0.3719 19 6 0.0999 -6.8844 -1.0949 20 6 -0.5148 -7.0536 -2.4889 21 8 -1.9201 -7.2818 -2.3592 22 6 -2.6365 -6.1978 -1.7631 23 6 -2.1301 -5.9878 -0.3271 24 1 -2.4030 -6.8437 0.2903 25 6 -2.7445 -4.7140 0.2567 26 6 -3.2531 -4.7714 1.6985 27 6 -4.2484 -4.7194 0.5377 28 1 -0.4850 0.8401 0.0004 29 1 3.9513 -2.4856 -0.0056 30 1 5.2798 -4.5428 0.1856 31 1 4.1670 -6.7252 0.4074 32 1 1.7150 -6.8683 0.4369 33 1 1.1396 -6.5709 -1.1876 34 1 0.0482 -7.8288 -0.5532 35 1 -0.3452 -6.1494 -3.0737 36 1 -0.0525 -7.9041 -2.9899 37 1 -2.4747 -5.2905 -2.3452 38 1 -3.7008 -6.4322 -1.7427 39 1 -2.2994 -3.7788 -0.0835 40 1 -3.1504 -5.7169 2.2311 41 1 -3.1426 -3.8740 2.3074 42 1 -4.7928 -3.7879 0.3828 43 1 -4.8001 -5.6308 0.3071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180390510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:35 Heat of formation + Delta-G solvation = -17.302647 kcal Electronic energy + Delta-G solvation = -27706.083557 eV Core-core repulsion = 23912.580443 eV Total energy + Delta-G solvation = -3793.503114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48074 -39.02932 -37.61981 -36.76973 -36.20810 -34.27697 -32.38756 -31.32700 -30.21323 -29.04006 -27.50935 -25.48363 -24.55735 -23.38078 -21.91059 -21.74196 -21.43266 -20.56184 -19.17843 -18.09436 -17.17267 -16.40242 -16.23232 -15.88279 -15.19450 -15.17107 -14.94994 -14.82328 -14.43922 -14.06446 -13.98282 -13.79541 -13.68196 -13.07276 -12.92040 -12.76975 -12.41699 -12.12475 -11.79006 -11.54070 -11.43165 -11.25562 -11.11613 -11.04671 -10.90817 -10.82931 -10.60007 -10.46796 -10.17378 -10.01664 -9.80667 -9.50991 -8.92770 -8.43534 -8.16019 -8.07946 -7.36744 -6.50344 -4.09996 1.71039 2.23748 3.08307 3.09808 3.15298 3.19986 3.56647 3.82698 3.89461 4.23778 4.48039 4.78452 4.88458 4.98480 5.06058 5.09273 5.14545 5.27056 5.29556 5.40533 5.43640 5.47950 5.59911 5.63542 5.69033 5.72782 5.77682 5.85697 5.92771 5.95888 6.05660 6.10201 6.28093 6.50878 6.53597 6.58699 6.72381 6.89786 6.98424 7.07093 7.11147 7.19674 7.24675 7.63099 7.83675 7.93465 8.90823 8.96236 9.60193 10.64510 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.005353 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.234341 B = 5229.640821 C = 6751.842671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.400 4.400 8 H 0.094 0.906 9 O -0.140 6.140 10 C 0.190 3.810 11 C -0.236 4.236 12 C -0.052 4.052 13 C -0.228 4.228 14 C -0.049 4.049 15 C -0.223 4.223 16 C 0.569 3.431 17 O -0.490 6.490 18 N -0.620 5.620 19 C 0.064 3.936 20 C 0.045 3.955 21 O -0.384 6.384 22 C 0.055 3.945 23 C 0.152 3.848 24 H 0.070 0.930 25 C -0.129 4.129 26 C -0.159 4.159 27 C -0.199 4.199 28 H 0.271 0.729 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.140 0.860 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -12.500 -2.741 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.112 0.888 9 O -0.039 6.039 10 C 0.131 3.869 11 C -0.255 4.255 12 C -0.071 4.071 13 C -0.247 4.247 14 C -0.067 4.067 15 C -0.227 4.227 16 C 0.360 3.640 17 O -0.364 6.364 18 N -0.357 5.357 19 C -0.059 4.059 20 C -0.033 4.033 21 O -0.303 6.303 22 C -0.023 4.023 23 C 0.048 3.952 24 H 0.088 0.912 25 C -0.147 4.147 26 C -0.196 4.196 27 C -0.237 4.237 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.158 0.842 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.459 -11.911 -2.505 12.258 hybrid contribution 0.798 0.927 0.155 1.234 sum -0.660 -10.983 -2.350 11.251 Atomic orbital electron populations 1.70094 1.05964 1.27673 1.43339 1.25352 0.95823 0.98912 0.96155 0.85658 0.79192 0.80268 0.78369 1.18982 1.20049 1.19982 1.21473 0.91867 0.80814 1.53435 0.88831 1.84042 1.34001 1.11188 1.74678 1.19194 0.89888 0.87140 0.90631 1.21156 0.93345 0.99362 1.11682 1.20899 0.98685 0.92294 0.95223 1.20492 0.93977 0.97190 1.13012 1.20953 0.93811 0.95893 0.96068 1.18815 0.92110 0.92150 1.19650 1.18225 0.87438 0.80168 0.78148 1.90846 1.65193 1.37579 1.42738 1.48035 1.05648 1.26504 1.55548 1.22816 0.98401 0.91847 0.92823 1.23037 0.81767 1.02272 0.96197 1.87902 1.19423 1.41371 1.81560 1.23069 0.96404 0.90463 0.92329 1.21421 0.80118 0.97221 0.96418 0.91221 1.22553 0.93283 0.99705 0.99185 1.22747 1.03002 1.02434 0.91457 1.23106 0.93077 1.02362 1.05138 0.91918 0.85062 0.87151 0.87157 0.86255 0.86992 0.91200 0.92424 0.87942 0.92192 0.88037 0.84245 0.89983 0.88804 0.88973 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.64 13.67 55.48 0.76 -23.88 16 2 C 0.04 1.22 5.49 -17.52 -0.10 1.12 16 3 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.40 -11.06 9.49 30.90 0.29 -10.77 16 8 H 0.09 2.37 5.21 -52.48 -0.27 2.09 16 9 O -0.14 -3.99 8.45 -16.21 -0.14 -4.12 16 10 C 0.19 4.57 6.63 -38.60 -0.26 4.31 16 11 C -0.24 -4.94 9.16 -39.44 -0.36 -5.30 16 12 C -0.05 -0.90 10.03 -39.54 -0.40 -1.29 16 13 C -0.23 -3.60 10.02 -39.61 -0.40 -3.99 16 14 C -0.05 -0.82 7.35 -39.20 -0.29 -1.11 16 15 C -0.22 -4.70 5.31 -104.81 -0.56 -5.26 16 16 C 0.57 12.21 7.14 -12.47 -0.09 12.12 16 17 O -0.49 -12.33 11.63 -11.73 -0.14 -12.47 16 18 N -0.62 -10.57 3.01 -165.72 -0.50 -11.07 16 19 C 0.06 0.86 5.00 -3.53 -0.02 0.84 16 20 C 0.04 0.55 6.98 37.31 0.26 0.81 16 21 O -0.38 -5.26 10.74 -35.23 -0.38 -5.64 16 22 C 0.05 0.75 6.17 37.53 0.23 0.99 16 23 C 0.15 2.36 3.25 -67.21 -0.22 2.14 16 24 H 0.07 1.02 7.98 -51.93 -0.41 0.60 16 25 C -0.13 -2.25 3.23 -90.62 -0.29 -2.54 16 26 C -0.16 -2.62 9.66 -26.73 -0.26 -2.88 16 27 C -0.20 -2.83 10.10 -26.74 -0.27 -3.10 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 30 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.66 6.06 -52.48 -0.32 1.34 16 33 H 0.11 1.51 4.53 -51.93 -0.24 1.27 16 34 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.14 3.09 6.16 -51.93 -0.32 2.77 16 40 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 41 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -32.39 346.53 -8.54 -40.93 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.64 Total: 9.68 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.71 Total: -13.90 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.26 Total: -34.95 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.65 Total: -22.23 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.39 -8.54 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180390510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.625 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds