Wall clock time and date at job start Tue Mar 31 2020 11:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46836 * 300.00411 * 3 2 1 6 6 H 1.48502 * 109.47073 * 60.00110 * 3 2 1 7 7 C 1.38691 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00014 * 179.97438 * 7 2 1 9 9 O 1.34819 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.35516 * 117.00186 * 185.07923 * 9 7 2 11 11 C 1.38832 * 120.16318 * 354.34435 * 10 9 7 12 12 C 1.38026 * 120.07252 * 180.02562 * 11 10 9 13 13 C 1.38563 * 120.40401 * 359.97438 * 12 11 10 14 14 C 1.37835 * 120.32117 * 0.04220 * 13 12 11 15 15 C 1.39656 * 119.91989 * 0.25430 * 14 13 12 16 16 C 1.47532 * 120.19841 * 179.69785 * 15 14 13 17 17 O 1.21599 * 120.00303 * 142.65511 * 16 15 14 18 18 N 1.34774 * 120.00253 * 322.66094 * 16 15 14 19 19 C 1.47156 * 120.98115 * 357.71786 * 18 16 15 20 20 C 1.53294 * 108.38516 * 230.51311 * 19 18 16 21 21 O 1.42962 * 109.22310 * 307.69712 * 20 19 18 22 22 C 1.42959 * 114.16501 * 62.57923 * 21 20 19 23 23 C 1.47146 * 120.98375 * 177.43782 * 18 16 15 24 24 H 1.09006 * 109.68209 * 249.21182 * 23 18 16 25 25 C 1.52999 * 109.68613 * 9.76134 * 23 18 16 26 26 C 1.52998 * 117.50325 * 255.61451 * 25 23 18 27 27 C 1.52992 * 117.50556 * 186.98848 * 25 23 18 28 28 H 0.97004 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.96073 * 0.04659 * 11 10 9 30 30 H 1.08003 * 119.79596 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.83973 * 180.02562 * 13 12 11 32 32 H 1.08007 * 120.03342 * 179.97438 * 14 13 12 33 33 H 1.08995 * 109.67996 * 350.24060 * 19 18 16 34 34 H 1.08997 * 109.67932 * 110.75093 * 19 18 16 35 35 H 1.09005 * 109.50944 * 67.62239 * 20 19 18 36 36 H 1.08998 * 109.50899 * 187.77111 * 20 19 18 37 37 H 1.09001 * 109.51569 * 57.34485 * 22 21 20 38 38 H 1.09002 * 109.51018 * 177.43974 * 22 21 20 39 39 H 1.09006 * 115.54561 * 41.31810 * 25 23 18 40 40 H 1.09003 * 117.49585 * 359.97438 * 26 25 23 41 41 H 1.09004 * 117.50267 * 145.01382 * 26 25 23 42 42 H 1.09000 * 117.50660 * 214.98351 * 27 25 23 43 43 H 1.09003 * 117.49718 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0086 -1.2011 -0.0005 8 1 3.0887 -1.2011 -0.0010 9 8 1.3346 -2.3687 -0.0005 10 6 2.0686 -3.5029 0.1058 11 6 3.4554 -3.4403 0.0905 12 6 4.2012 -4.5967 0.1984 13 6 3.5745 -5.8262 0.3231 14 6 2.1987 -5.9074 0.3399 15 6 1.4309 -4.7465 0.2254 16 6 -0.0422 -4.8270 0.2358 17 8 -0.6943 -3.9651 0.7929 18 7 -0.6652 -5.8561 -0.3719 19 6 0.0999 -6.8844 -1.0949 20 6 -0.5148 -7.0536 -2.4889 21 8 -1.9201 -7.2818 -2.3592 22 6 -2.6365 -6.1978 -1.7631 23 6 -2.1301 -5.9878 -0.3271 24 1 -2.4030 -6.8437 0.2903 25 6 -2.7445 -4.7140 0.2567 26 6 -3.2531 -4.7714 1.6985 27 6 -4.2484 -4.7194 0.5377 28 1 -0.4850 0.8401 0.0004 29 1 3.9513 -2.4856 -0.0056 30 1 5.2798 -4.5428 0.1856 31 1 4.1670 -6.7252 0.4074 32 1 1.7150 -6.8683 0.4369 33 1 1.1396 -6.5709 -1.1876 34 1 0.0482 -7.8288 -0.5532 35 1 -0.3452 -6.1494 -3.0737 36 1 -0.0525 -7.9041 -2.9899 37 1 -2.4747 -5.2905 -2.3452 38 1 -3.7008 -6.4322 -1.7427 39 1 -2.2994 -3.7788 -0.0835 40 1 -3.1504 -5.7169 2.2311 41 1 -3.1426 -3.8740 2.3074 42 1 -4.7928 -3.7879 0.3828 43 1 -4.8001 -5.6308 0.3071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180390510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:34 Heat of formation + Delta-G solvation = -38.738098 kcal Electronic energy + Delta-G solvation = -27707.013068 eV Core-core repulsion = 23912.580443 eV Total energy + Delta-G solvation = -3794.432625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.89603 -40.58533 -39.01250 -38.31059 -37.66689 -35.65691 -34.34538 -32.62561 -31.55595 -30.63785 -28.79021 -27.41245 -25.75615 -24.79927 -23.34743 -23.17853 -22.69518 -21.95722 -20.64950 -19.89681 -18.75230 -17.90177 -17.52348 -17.08547 -16.55302 -16.53630 -16.40341 -16.31011 -15.94628 -15.49354 -15.41860 -15.35971 -15.23518 -14.51197 -14.37114 -14.32805 -13.97594 -13.57825 -13.23961 -13.05864 -12.86646 -12.61988 -12.50916 -12.41187 -12.26603 -12.24147 -12.13426 -11.84266 -11.53686 -11.27761 -11.19972 -11.10902 -10.85882 -9.96131 -9.67363 -9.42196 -9.04518 -8.48253 -6.18236 0.17872 0.68885 1.30143 1.40079 1.49406 1.83902 2.03955 2.13024 2.77301 2.82649 2.95451 3.14587 3.42693 3.53043 3.68012 3.93106 3.93314 4.01447 4.09216 4.12941 4.20109 4.25232 4.29791 4.38100 4.49299 4.53911 4.59951 4.60689 4.72196 4.74585 4.82421 4.90979 4.94666 4.98698 5.06136 5.11896 5.24966 5.36122 5.49730 5.56590 5.68410 5.69478 5.93632 6.04045 6.14995 6.43963 6.92855 7.40306 7.76044 8.72887 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.005353 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.234341 B = 5229.640821 C = 6751.842671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.022 4.022 3 Si 1.020 2.980 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.421 4.421 8 H 0.106 0.894 9 O -0.203 6.203 10 C 0.149 3.851 11 C -0.254 4.254 12 C -0.044 4.044 13 C -0.195 4.195 14 C -0.041 4.041 15 C -0.237 4.237 16 C 0.557 3.443 17 O -0.543 6.543 18 N -0.616 5.616 19 C 0.058 3.942 20 C 0.044 3.956 21 O -0.383 6.383 22 C 0.062 3.938 23 C 0.153 3.847 24 H 0.094 0.906 25 C -0.147 4.147 26 C -0.170 4.170 27 C -0.163 4.163 28 H 0.270 0.730 29 H 0.122 0.878 30 H 0.153 0.847 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.144 0.856 37 H 0.036 0.964 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.451 -17.055 -3.185 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.497 4.497 8 H 0.123 0.877 9 O -0.106 6.106 10 C 0.095 3.905 11 C -0.274 4.274 12 C -0.062 4.062 13 C -0.213 4.213 14 C -0.059 4.059 15 C -0.242 4.242 16 C 0.348 3.652 17 O -0.421 6.421 18 N -0.352 5.352 19 C -0.063 4.063 20 C -0.033 4.033 21 O -0.301 6.301 22 C -0.016 4.016 23 C 0.050 3.950 24 H 0.111 0.889 25 C -0.165 4.165 26 C -0.207 4.207 27 C -0.201 4.201 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.171 0.829 31 H 0.183 0.817 32 H 0.176 0.824 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.056 0.944 36 H 0.161 0.839 37 H 0.055 0.945 38 H 0.149 0.851 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.590 -16.569 -2.979 16.845 hybrid contribution 0.332 1.914 0.295 1.965 sum 0.922 -14.656 -2.683 14.928 Atomic orbital electron populations 1.70285 1.08250 1.28437 1.47480 1.26682 0.96746 1.02958 0.95653 0.84531 0.78480 0.74689 0.78458 1.16884 1.19275 1.19648 1.21974 0.92574 0.81549 1.53577 0.87709 1.84042 1.35574 1.12323 1.78693 1.19950 0.91593 0.87223 0.91773 1.21294 0.92341 1.00912 1.12804 1.21409 1.00689 0.91241 0.92838 1.21183 0.93719 0.98493 1.07906 1.21418 0.94435 0.95729 0.94315 1.19258 0.92691 0.92769 1.19433 1.18527 0.87845 0.80588 0.78273 1.90857 1.66268 1.39686 1.45296 1.48098 1.06751 1.25960 1.54379 1.23138 0.97939 0.91797 0.93450 1.23203 0.81340 1.03248 0.95521 1.87911 1.20035 1.40855 1.81293 1.23051 0.98039 0.89889 0.90619 1.21576 0.79088 0.96490 0.97843 0.88868 1.22185 0.95870 0.98412 1.00059 1.22716 1.04717 1.01962 0.91301 1.23178 0.91168 1.04056 1.01649 0.92134 0.86052 0.82903 0.81721 0.82352 0.87069 0.87732 0.94372 0.83876 0.94530 0.85066 0.90378 0.87976 0.92017 0.89271 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.80 13.67 21.62 0.30 -58.51 16 2 C -0.02 -1.28 5.49 84.85 0.47 -0.81 16 3 Si 1.02 44.25 29.55 68.60 2.03 46.27 16 4 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.42 -25.24 9.49 67.93 0.64 -24.59 16 8 H 0.11 5.67 5.21 -2.91 -0.02 5.66 16 9 O -0.20 -12.69 8.45 -3.80 -0.03 -12.72 16 10 C 0.15 7.54 6.63 22.91 0.15 7.69 16 11 C -0.25 -10.71 9.16 22.36 0.20 -10.51 16 12 C -0.04 -1.33 10.03 22.30 0.22 -1.10 16 13 C -0.19 -5.04 10.02 22.25 0.22 -4.82 16 14 C -0.04 -1.23 7.35 22.52 0.17 -1.06 16 15 C -0.24 -10.17 5.31 -19.99 -0.11 -10.28 16 16 C 0.56 25.10 7.14 86.69 0.62 25.72 16 17 O -0.54 -30.13 11.63 12.24 0.14 -29.99 16 18 N -0.62 -20.80 3.01 -796.48 -2.40 -23.20 16 19 C 0.06 1.36 5.00 86.35 0.43 1.80 16 20 C 0.04 0.95 6.98 72.08 0.50 1.45 16 21 O -0.38 -9.31 10.74 -148.98 -1.60 -10.91 16 22 C 0.06 1.60 6.17 72.22 0.45 2.05 16 23 C 0.15 4.64 3.25 45.11 0.15 4.79 16 24 H 0.09 2.44 7.98 -2.38 -0.02 2.42 16 25 C -0.15 -5.41 3.23 -10.80 -0.03 -5.45 16 26 C -0.17 -5.85 9.66 30.59 0.30 -5.55 16 27 C -0.16 -4.60 10.10 30.59 0.31 -4.29 16 28 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 29 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 30 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.16 3.52 6.06 -2.91 -0.02 3.51 16 33 H 0.11 2.61 4.53 -2.39 -0.01 2.60 16 34 H 0.10 1.81 8.04 -2.39 -0.02 1.79 16 35 H 0.04 0.97 8.14 -2.38 -0.02 0.96 16 36 H 0.14 1.95 8.14 -2.39 -0.02 1.94 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.13 2.62 8.14 -2.39 -0.02 2.61 16 39 H 0.08 3.93 6.16 -2.38 -0.01 3.91 16 40 H 0.10 3.03 8.11 -2.39 -0.02 3.01 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -84.71 346.53 4.16 -80.55 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 1.04 Total: 33.47 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 4.69 Total: -24.97 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -2.10 Total: -81.71 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -1.49 Total: -53.62 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -84.71 4.16 -80.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180390510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.815 kcal (2) G-P(sol) polarization free energy of solvation -84.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds