Wall clock time and date at job start Tue Mar 31 2020 11:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38400 * 120.11920 * 2 1 4 4 C 1.37693 * 119.97840 * 179.97438 * 3 2 1 5 5 C 1.38926 * 120.79406 * 359.70423 * 4 3 2 6 6 C 1.39251 * 118.86732 * 0.45058 * 5 4 3 7 7 C 1.37980 * 120.24287 * 359.68752 * 6 5 4 8 8 C 1.50695 * 119.82137 * 179.97438 * 7 6 5 9 9 O 1.36126 * 111.24257 * 180.49063 * 5 4 3 10 10 C 1.43760 * 109.28857 * 341.37636 * 9 5 4 11 11 H 1.09002 * 110.74381 * 146.07987 * 10 9 5 12 12 C 1.50698 * 110.74494 * 269.23878 * 10 9 5 13 13 O 1.21281 * 120.00057 * 3.54909 * 12 10 9 14 14 N 1.34779 * 119.99739 * 183.54330 * 12 10 9 15 15 C 1.47577 * 134.48932 * 180.02562 * 14 12 10 16 16 C 1.53947 * 86.11672 * 204.64306 * 15 14 12 17 17 O 1.42901 * 113.74364 * 90.73738 * 16 15 14 18 18 C 1.50696 * 113.74446 * 222.04860 * 16 15 14 19 19 H 1.08001 * 120.00029 * 0.02562 * 18 16 15 20 20 C 1.37875 * 120.00439 * 180.02562 * 18 16 15 21 21 N 1.31520 * 119.99691 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00465 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47189 * 89.99781 * 22 20 18 24 24 H 1.48491 * 109.47126 * 209.99715 * 22 20 18 25 25 H 1.48497 * 109.46781 * 329.99550 * 22 20 18 26 26 C 1.47577 * 134.49282 * 0.02562 * 14 12 10 27 27 C 1.51646 * 132.17730 * 179.51877 * 4 3 2 28 28 H 1.09004 * 109.46789 * 90.00679 * 1 2 3 29 29 H 1.09003 * 109.47123 * 210.00669 * 1 2 3 30 30 H 1.09000 * 109.47462 * 330.00532 * 1 2 3 31 31 H 1.08004 * 120.00834 * 359.94169 * 3 2 1 32 32 H 1.08002 * 119.87786 * 179.69031 * 6 5 4 33 33 H 1.09006 * 109.47174 * 270.02529 * 8 7 6 34 34 H 1.09003 * 109.47462 * 30.02413 * 8 7 6 35 35 H 1.09000 * 109.46974 * 150.02414 * 8 7 6 36 36 H 1.08999 * 113.76881 * 90.34351 * 15 14 12 37 37 H 1.09004 * 113.87317 * 318.95655 * 15 14 12 38 38 H 0.96692 * 114.00744 * 180.02562 * 17 16 15 39 39 H 0.96999 * 120.00114 * 179.97438 * 21 20 18 40 40 H 1.09003 * 113.76710 * 41.05948 * 26 14 12 41 41 H 1.08991 * 113.77259 * 269.65562 * 26 14 12 42 42 H 1.08999 * 110.94118 * 77.69591 * 27 4 3 43 43 H 1.08996 * 110.94085 * 313.99949 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1971 0.0000 4 6 3.5784 1.1938 0.0005 5 6 4.2867 -0.0014 0.0072 6 6 3.5804 -1.2015 0.0038 7 6 2.2006 -1.1958 0.0005 8 6 1.4459 -2.5001 -0.0037 9 8 5.6296 0.2212 0.0174 10 6 5.8911 1.5670 -0.4153 11 1 6.7577 1.9776 0.1029 12 6 6.0906 1.6185 -1.9081 13 8 5.9556 0.6131 -2.5730 14 7 6.4187 2.7818 -2.5044 15 6 6.6830 3.1915 -3.8973 16 6 7.5164 4.3357 -3.2922 17 8 8.8942 4.0068 -3.1041 18 6 7.3157 5.6617 -3.9795 19 1 6.6355 5.7395 -4.8148 20 6 8.0003 6.7756 -3.5421 21 7 8.8283 6.6810 -2.5246 22 14 7.7510 8.4195 -4.3935 23 1 6.6381 9.1526 -3.7384 24 1 8.9970 9.2214 -4.2962 25 1 7.4197 8.1912 -5.8230 26 6 6.6582 4.1574 -2.0266 27 6 4.5993 2.3150 -0.0088 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6635 2.1337 -0.0010 32 1 4.1146 -2.1401 0.0039 33 1 1.2668 -2.8129 -1.0325 34 1 2.0327 -3.2612 0.5105 35 1 0.4921 -2.3696 0.5076 36 1 5.7952 3.5296 -4.4317 37 1 7.2724 2.4712 -4.4648 38 1 9.4212 4.7227 -2.7238 39 1 9.3103 7.4646 -2.2170 40 1 7.2280 4.2072 -1.0988 41 1 5.7632 4.7793 -2.0116 42 1 4.7008 2.7577 0.9821 43 1 4.3390 3.0728 -0.7477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186822815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:44 Heat of formation + Delta-G solvation = -56.933585 kcal Electronic energy + Delta-G solvation = -26575.851170 eV Core-core repulsion = 22780.629530 eV Total energy + Delta-G solvation = -3795.221640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38461 -39.40114 -38.26278 -36.93910 -34.06401 -33.29809 -32.25548 -32.07048 -31.13803 -28.71167 -27.03768 -26.65611 -25.35156 -25.20632 -23.15581 -22.11299 -20.68403 -20.03197 -18.62629 -17.57290 -17.13558 -16.71523 -16.51004 -15.50317 -15.22039 -15.15999 -14.75941 -14.54799 -14.30399 -14.05582 -13.91020 -13.40303 -13.18094 -13.00294 -12.93708 -12.67819 -12.60762 -12.37918 -12.21246 -12.11082 -12.05147 -11.62269 -11.53557 -11.38579 -11.17864 -11.07736 -10.98895 -10.74052 -10.57871 -10.34327 -9.65530 -9.24859 -8.83297 -8.73335 -8.49785 -7.95360 -7.87198 -6.45181 -4.55841 1.25373 1.37337 2.92649 3.09716 3.10584 3.19575 3.22951 3.57975 3.68818 4.13848 4.38786 4.51602 4.70749 4.75896 4.82252 4.83908 4.99682 5.08528 5.16619 5.32579 5.37912 5.48376 5.51257 5.56521 5.59561 5.63483 5.72286 5.73648 5.87122 5.90163 6.10369 6.10996 6.25502 6.30266 6.40117 6.42690 6.50984 6.54984 6.59321 6.66713 7.03154 7.22056 7.57587 7.74989 8.35568 8.47694 8.61762 9.15773 9.40865 10.61263 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.003058 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.843049 B = 9153.625608 C = 9662.480645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.122 4.122 3 C -0.065 4.065 4 C -0.174 4.174 5 C 0.117 3.883 6 C -0.133 4.133 7 C -0.055 4.055 8 C -0.115 4.115 9 O -0.277 6.277 10 C 0.070 3.930 11 H 0.138 0.862 12 C 0.514 3.486 13 O -0.545 6.545 14 N -0.627 5.627 15 C 0.113 3.887 16 C 0.241 3.759 17 O -0.573 6.573 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.271 1.271 26 C 0.074 3.926 27 C -0.095 4.095 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.393 0.607 39 H 0.274 0.726 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.037 -8.115 8.081 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.175 4.175 5 C 0.072 3.928 6 C -0.151 4.151 7 C -0.055 4.055 8 C -0.171 4.171 9 O -0.189 6.189 10 C 0.011 3.989 11 H 0.156 0.844 12 C 0.301 3.699 13 O -0.424 6.424 14 N -0.362 5.362 15 C -0.009 4.009 16 C 0.199 3.801 17 O -0.385 6.385 18 C -0.575 4.575 19 H 0.090 0.910 20 C -0.130 4.130 21 N -0.538 5.538 22 Si 0.735 3.265 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.049 4.049 27 C -0.132 4.132 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.249 0.751 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.119 0.881 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.014 -9.439 7.756 17.850 hybrid contribution 0.229 1.712 -0.105 1.730 sum -12.785 -7.727 7.651 16.784 Atomic orbital electron populations 1.20744 0.90990 1.02545 1.02173 1.19543 0.95923 0.92119 1.04608 1.20095 0.91553 0.97856 0.98775 1.20714 0.94696 0.94381 1.07688 1.19514 0.83219 0.94487 0.95596 1.20044 0.92724 0.95698 1.06674 1.19379 0.92244 0.95184 0.98732 1.20850 0.99911 0.93752 1.02573 1.86893 1.20140 1.31545 1.80349 1.23238 1.00637 0.81227 0.93813 0.84415 1.20288 0.77316 0.83023 0.89264 1.90673 1.52168 1.33973 1.65560 1.50136 1.66507 1.07994 1.11595 1.23500 0.98090 0.95627 0.83672 1.19814 0.80473 0.90759 0.89089 1.86063 1.20268 1.45788 1.86399 1.21503 1.26494 0.92321 1.17208 0.91003 1.25073 0.93936 0.99796 0.94218 1.69310 1.27600 1.31448 1.25488 0.86319 0.77861 0.82229 0.80063 1.20291 1.20874 1.19533 1.24401 1.00045 0.78096 1.02357 1.21706 0.90632 0.97009 1.03879 0.91420 0.91315 0.91804 0.85804 0.85517 0.90920 0.91492 0.90974 0.89572 0.91037 0.75087 0.91576 0.91187 0.89811 0.88068 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.61 36.00 0.35 -0.57 16 2 C -0.12 -1.45 5.89 -104.56 -0.62 -2.07 16 3 C -0.06 -0.84 9.70 -39.72 -0.39 -1.23 16 4 C -0.17 -2.63 6.26 -104.10 -0.65 -3.28 16 5 C 0.12 1.96 6.84 -38.95 -0.27 1.69 16 6 C -0.13 -1.94 9.71 -39.30 -0.38 -2.32 16 7 C -0.06 -0.68 5.87 -104.72 -0.61 -1.29 16 8 C -0.11 -1.00 9.60 36.00 0.35 -0.65 16 9 O -0.28 -5.03 10.43 -39.18 -0.41 -5.43 16 10 C 0.07 1.19 3.86 -26.98 -0.10 1.09 16 11 H 0.14 2.04 8.14 -51.93 -0.42 1.62 16 12 C 0.51 10.71 7.26 -10.99 -0.08 10.63 16 13 O -0.55 -13.32 17.19 -13.49 -0.23 -13.55 16 14 N -0.63 -12.97 3.60 -178.33 -0.64 -13.61 16 15 C 0.11 2.43 8.22 -2.98 -0.02 2.40 16 16 C 0.24 5.57 1.45 -90.84 -0.13 5.44 16 17 O -0.57 -14.36 13.49 -35.23 -0.48 -14.84 16 18 C -0.54 -13.02 8.62 -34.44 -0.30 -13.31 16 19 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 20 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 21 N -0.90 -21.95 11.08 55.43 0.61 -21.33 16 22 Si 0.91 18.91 29.54 -169.99 -5.02 13.88 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 C 0.07 1.48 7.83 -2.97 -0.02 1.46 16 27 C -0.09 -1.34 6.64 -26.52 -0.18 -1.52 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.48 5.95 -51.93 -0.31 0.17 16 30 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.07 0.50 5.94 -51.93 -0.31 0.20 16 36 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 37 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.39 9.92 6.42 45.56 0.29 10.22 16 39 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.08 1.59 8.09 -51.93 -0.42 1.16 16 42 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.10 1.38 7.74 -51.93 -0.40 0.98 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -29.76 358.89 -9.25 -39.01 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.33 Total: 12.34 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -3.16 Total: -1.89 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.03 Total: -34.94 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -1.12 Total: -33.82 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.76 -9.25 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186822815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.925 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds