Wall clock time and date at job start Tue Mar 31 2020 11:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38400 * 120.11920 * 2 1 4 4 C 1.37693 * 119.97840 * 179.97438 * 3 2 1 5 5 C 1.38926 * 120.79406 * 359.70423 * 4 3 2 6 6 C 1.39251 * 118.86732 * 0.45058 * 5 4 3 7 7 C 1.37980 * 120.24287 * 359.68752 * 6 5 4 8 8 C 1.50695 * 119.82137 * 179.97438 * 7 6 5 9 9 O 1.36126 * 111.24257 * 180.49063 * 5 4 3 10 10 C 1.43760 * 109.28857 * 341.37636 * 9 5 4 11 11 H 1.09002 * 110.74381 * 146.07987 * 10 9 5 12 12 C 1.50698 * 110.74494 * 269.23878 * 10 9 5 13 13 O 1.21281 * 120.00057 * 3.54909 * 12 10 9 14 14 N 1.34779 * 119.99739 * 183.54330 * 12 10 9 15 15 C 1.47577 * 134.48932 * 180.02562 * 14 12 10 16 16 C 1.53947 * 86.11672 * 204.64306 * 15 14 12 17 17 O 1.42901 * 113.74364 * 90.73738 * 16 15 14 18 18 C 1.50696 * 113.74446 * 222.04860 * 16 15 14 19 19 H 1.08001 * 120.00029 * 0.02562 * 18 16 15 20 20 C 1.37875 * 120.00439 * 180.02562 * 18 16 15 21 21 N 1.31520 * 119.99691 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00465 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47189 * 89.99781 * 22 20 18 24 24 H 1.48491 * 109.47126 * 209.99715 * 22 20 18 25 25 H 1.48497 * 109.46781 * 329.99550 * 22 20 18 26 26 C 1.47577 * 134.49282 * 0.02562 * 14 12 10 27 27 C 1.51646 * 132.17730 * 179.51877 * 4 3 2 28 28 H 1.09004 * 109.46789 * 90.00679 * 1 2 3 29 29 H 1.09003 * 109.47123 * 210.00669 * 1 2 3 30 30 H 1.09000 * 109.47462 * 330.00532 * 1 2 3 31 31 H 1.08004 * 120.00834 * 359.94169 * 3 2 1 32 32 H 1.08002 * 119.87786 * 179.69031 * 6 5 4 33 33 H 1.09006 * 109.47174 * 270.02529 * 8 7 6 34 34 H 1.09003 * 109.47462 * 30.02413 * 8 7 6 35 35 H 1.09000 * 109.46974 * 150.02414 * 8 7 6 36 36 H 1.08999 * 113.76881 * 90.34351 * 15 14 12 37 37 H 1.09004 * 113.87317 * 318.95655 * 15 14 12 38 38 H 0.96692 * 114.00744 * 180.02562 * 17 16 15 39 39 H 0.96999 * 120.00114 * 179.97438 * 21 20 18 40 40 H 1.09003 * 113.76710 * 41.05948 * 26 14 12 41 41 H 1.08991 * 113.77259 * 269.65562 * 26 14 12 42 42 H 1.08999 * 110.94118 * 77.69591 * 27 4 3 43 43 H 1.08996 * 110.94085 * 313.99949 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1971 0.0000 4 6 3.5784 1.1938 0.0005 5 6 4.2867 -0.0014 0.0072 6 6 3.5804 -1.2015 0.0038 7 6 2.2006 -1.1958 0.0005 8 6 1.4459 -2.5001 -0.0037 9 8 5.6296 0.2212 0.0174 10 6 5.8911 1.5670 -0.4153 11 1 6.7577 1.9776 0.1029 12 6 6.0906 1.6185 -1.9081 13 8 5.9556 0.6131 -2.5730 14 7 6.4187 2.7818 -2.5044 15 6 6.6830 3.1915 -3.8973 16 6 7.5164 4.3357 -3.2922 17 8 8.8942 4.0068 -3.1041 18 6 7.3157 5.6617 -3.9795 19 1 6.6355 5.7395 -4.8148 20 6 8.0003 6.7756 -3.5421 21 7 8.8283 6.6810 -2.5246 22 14 7.7510 8.4195 -4.3935 23 1 6.6381 9.1526 -3.7384 24 1 8.9970 9.2214 -4.2962 25 1 7.4197 8.1912 -5.8230 26 6 6.6582 4.1574 -2.0266 27 6 4.5993 2.3150 -0.0088 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6635 2.1337 -0.0010 32 1 4.1146 -2.1401 0.0039 33 1 1.2668 -2.8129 -1.0325 34 1 2.0327 -3.2612 0.5105 35 1 0.4921 -2.3696 0.5076 36 1 5.7952 3.5296 -4.4317 37 1 7.2724 2.4712 -4.4648 38 1 9.4212 4.7227 -2.7238 39 1 9.3103 7.4646 -2.2170 40 1 7.2280 4.2072 -1.0988 41 1 5.7632 4.7793 -2.0116 42 1 4.7008 2.7577 0.9821 43 1 4.3390 3.0728 -0.7477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186822815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:44 Heat of formation + Delta-G solvation = -74.892360 kcal Electronic energy + Delta-G solvation = -26576.629921 eV Core-core repulsion = 22780.629530 eV Total energy + Delta-G solvation = -3796.000391 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60794 -40.98366 -39.48542 -38.53337 -35.89289 -34.37274 -34.12982 -33.04701 -32.26306 -30.27668 -28.12724 -27.72231 -27.04954 -26.74164 -24.33765 -23.14728 -22.01954 -21.43161 -20.20850 -19.34745 -18.51059 -18.06542 -17.82231 -17.11612 -16.88870 -16.38677 -16.04234 -15.89959 -15.77042 -15.11783 -15.07970 -14.68996 -14.52010 -14.49236 -14.11058 -13.91738 -13.73101 -13.58549 -13.52605 -13.40698 -13.20042 -12.91054 -12.86637 -12.75105 -12.73129 -12.27144 -12.21158 -12.17218 -12.09331 -11.74686 -11.35148 -10.92260 -10.64582 -10.27321 -9.74535 -9.66023 -8.97885 -8.26939 -6.43902 0.23250 0.32413 1.38085 1.47163 1.51538 1.59645 1.65805 2.22577 2.41110 2.64692 2.95126 3.20360 3.29761 3.39043 3.74133 3.83628 3.93423 4.05307 4.09556 4.15430 4.26095 4.40133 4.43194 4.51221 4.55956 4.61003 4.69747 4.74781 4.75094 4.79421 4.86116 4.90313 4.93826 5.01591 5.13922 5.22298 5.23088 5.32412 5.37350 5.61249 5.70066 5.72950 5.91212 6.13703 6.61562 6.70785 6.96832 7.29798 7.47413 8.78840 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.003058 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.843049 B = 9153.625608 C = 9662.480645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.073 4.073 4 C -0.188 4.188 5 C 0.074 3.926 6 C -0.151 4.151 7 C -0.060 4.060 8 C -0.113 4.113 9 O -0.299 6.299 10 C 0.071 3.929 11 H 0.157 0.843 12 C 0.507 3.493 13 O -0.590 6.590 14 N -0.625 5.625 15 C 0.109 3.891 16 C 0.221 3.779 17 O -0.588 6.588 18 C -0.555 4.555 19 H 0.072 0.928 20 C 0.035 3.965 21 N -0.915 5.915 22 Si 0.968 3.032 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.091 3.909 27 C -0.085 4.085 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.389 0.611 39 H 0.277 0.723 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.570 -7.254 8.998 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.189 4.189 5 C 0.029 3.971 6 C -0.170 4.170 7 C -0.060 4.060 8 C -0.169 4.169 9 O -0.212 6.212 10 C 0.012 3.988 11 H 0.174 0.826 12 C 0.297 3.703 13 O -0.471 6.471 14 N -0.359 5.359 15 C -0.013 4.013 16 C 0.179 3.821 17 O -0.401 6.401 18 C -0.593 4.593 19 H 0.090 0.910 20 C -0.166 4.166 21 N -0.555 5.555 22 Si 0.793 3.207 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.031 4.031 27 C -0.122 4.122 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.245 0.755 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.149 0.851 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.560 -8.574 8.688 19.776 hybrid contribution 0.986 1.367 -0.426 1.739 sum -14.574 -7.206 8.262 18.237 Atomic orbital electron populations 1.20835 0.88142 1.04213 1.03102 1.20060 0.97968 0.91516 1.02442 1.20487 0.90922 0.99467 0.98248 1.20955 0.95705 0.93956 1.08250 1.19918 0.82854 0.96024 0.98288 1.20376 0.94037 0.95370 1.07230 1.19836 0.91510 0.97192 0.97473 1.20936 1.00566 0.92009 1.03393 1.86848 1.21550 1.32176 1.80667 1.23338 1.02932 0.81832 0.90734 0.82554 1.21104 0.76092 0.82092 0.91005 1.90635 1.54143 1.35351 1.67019 1.50148 1.66194 1.08379 1.11177 1.23535 0.98461 0.94912 0.84382 1.20089 0.79919 0.91015 0.91029 1.86052 1.21576 1.45871 1.86589 1.21695 1.27008 0.92985 1.17627 0.91003 1.25713 0.93664 1.02469 0.94711 1.69366 1.27838 1.32209 1.26098 0.85399 0.77711 0.78698 0.78887 1.19471 1.21028 1.19784 1.24250 1.00021 0.77684 1.01148 1.21727 0.88710 0.96409 1.05345 0.90660 0.89484 0.90418 0.83464 0.85469 0.90271 0.90807 0.88672 0.87809 0.92638 0.75514 0.91345 0.90575 0.88082 0.85054 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.61 71.23 0.68 -0.73 16 2 C -0.12 -2.58 5.89 -19.83 -0.12 -2.70 16 3 C -0.07 -1.77 9.70 22.18 0.22 -1.56 16 4 C -0.19 -5.53 6.26 -19.53 -0.12 -5.65 16 5 C 0.07 2.50 6.84 22.68 0.16 2.65 16 6 C -0.15 -4.48 9.71 22.45 0.22 -4.26 16 7 C -0.06 -1.39 5.87 -19.93 -0.12 -1.51 16 8 C -0.11 -1.70 9.60 71.23 0.68 -1.02 16 9 O -0.30 -11.17 10.43 -76.78 -0.80 -11.97 16 10 C 0.07 2.40 3.86 30.43 0.12 2.52 16 11 H 0.16 4.55 8.14 -2.39 -0.02 4.53 16 12 C 0.51 21.50 7.26 87.66 0.64 22.14 16 13 O -0.59 -29.82 17.19 15.17 0.26 -29.56 16 14 N -0.62 -25.87 3.60 -840.33 -3.03 -28.90 16 15 C 0.11 4.75 8.22 86.48 0.71 5.46 16 16 C 0.22 10.22 1.45 -10.88 -0.02 10.21 16 17 O -0.59 -29.97 13.49 -148.98 -2.01 -31.98 16 18 C -0.56 -26.64 8.62 25.60 0.22 -26.42 16 19 H 0.07 3.36 7.81 -2.91 -0.02 3.34 16 20 C 0.04 1.67 5.39 84.65 0.46 2.12 16 21 N -0.91 -44.17 11.08 21.45 0.24 -43.93 16 22 Si 0.97 37.98 29.54 68.60 2.03 40.00 16 23 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 26 C 0.09 3.59 7.83 86.48 0.68 4.27 16 27 C -0.08 -2.29 6.64 30.73 0.20 -2.09 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.85 5.95 -2.39 -0.01 0.83 16 30 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 35 H 0.09 0.99 5.94 -2.39 -0.01 0.97 16 36 H 0.10 4.08 8.09 -2.39 -0.02 4.07 16 37 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.39 19.96 6.42 -74.06 -0.48 19.49 16 39 H 0.28 12.68 8.31 -92.71 -0.77 11.91 16 40 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.10 3.64 8.09 -2.39 -0.02 3.62 16 42 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.10 2.61 7.74 -2.39 -0.02 2.59 16 Total: -1.00 -65.21 358.89 1.86 -63.35 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: 0.56 Total: 39.54 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 4.61 Total: 3.43 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -2.79 Total: -72.83 kcal Atomic # 8 Polarization: -70.96 SS G_CDS: -2.55 Total: -73.51 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.00 kcal Total: -65.21 1.86 -63.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186822815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.539 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds