Wall clock time and date at job start Tue Mar 31 2020 12:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 116.99825 * 2 1 4 4 O 1.20823 * 120.00231 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99944 * 179.97438 * 3 2 1 6 6 C 1.53001 * 110.00321 * 276.10240 * 5 3 2 7 7 C 1.54325 * 109.88019 * 155.00149 * 5 3 2 8 8 C 1.55159 * 102.94371 * 218.39269 * 7 5 3 9 9 C 1.54907 * 101.57793 * 35.50296 * 8 7 5 10 10 N 1.47019 * 109.87984 * 37.20066 * 5 3 2 11 11 C 1.34781 * 125.64630 * 298.31944 * 10 5 3 12 12 O 1.21550 * 120.00079 * 354.10015 * 11 10 5 13 13 C 1.47893 * 119.99814 * 174.10213 * 11 10 5 14 14 C 1.39921 * 120.02692 * 350.51514 * 13 11 10 15 15 C 1.38321 * 120.35877 * 179.97438 * 14 13 11 16 16 C 1.37751 * 120.41266 * 359.97438 * 15 14 13 17 17 C 1.40749 * 120.03992 * 0.02562 * 16 15 14 18 18 C 1.41434 * 120.17856 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00009 * 25.03259 * 18 17 16 20 20 C 1.39941 * 120.00187 * 205.03553 * 18 17 16 21 21 N 1.30821 * 119.99970 * 18.03457 * 20 18 17 22 22 Si 1.86804 * 120.00195 * 198.04027 * 20 18 17 23 23 H 1.48500 * 109.47011 * 59.99355 * 22 20 18 24 24 H 1.48493 * 109.47457 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46775 * 299.99788 * 22 20 18 26 26 C 1.38992 * 120.02226 * 170.24445 * 13 11 10 27 27 H 1.09006 * 109.47178 * 299.99797 * 1 2 3 28 28 H 1.09000 * 109.47075 * 59.99329 * 1 2 3 29 29 H 1.08995 * 109.47095 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46789 * 298.90624 * 6 5 3 31 31 H 1.08998 * 109.46784 * 58.90081 * 6 5 3 32 32 H 1.08997 * 109.47258 * 178.90249 * 6 5 3 33 33 H 1.09001 * 110.71835 * 100.03261 * 7 5 3 34 34 H 1.08996 * 110.72051 * 336.76025 * 7 5 3 35 35 H 1.09001 * 111.00087 * 153.57939 * 8 7 5 36 36 H 1.08996 * 111.00525 * 277.39522 * 8 7 5 37 37 H 1.09010 * 110.36480 * 81.83086 * 9 8 7 38 38 H 1.08999 * 110.36923 * 204.03766 * 9 8 7 39 39 H 1.08002 * 119.81871 * 359.96164 * 14 13 11 40 40 H 1.07997 * 119.79430 * 180.02562 * 15 14 13 41 41 H 1.08008 * 119.98418 * 179.97438 * 16 15 14 42 42 H 0.97000 * 119.99999 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.20259 * 0.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0964 1.1500 1.4304 7 6 4.0217 2.6158 -0.6128 8 6 5.2775 2.2149 -1.4312 9 6 4.8776 0.8097 -1.9459 10 7 4.1235 0.2012 -0.8349 11 6 3.9709 -1.1206 -0.6201 12 8 3.4184 -1.5125 0.3891 13 6 4.4758 -2.0941 -1.6124 14 6 4.9306 -1.6510 -2.8592 15 6 5.4047 -2.5554 -3.7923 16 6 5.4352 -3.9023 -3.5050 17 6 4.9818 -4.3668 -2.2561 18 6 5.0112 -5.7491 -1.9582 19 1 5.7137 -6.3955 -2.4633 20 6 4.1301 -6.2793 -1.0091 21 7 3.0645 -5.6064 -0.6580 22 14 4.4754 -7.9478 -0.2433 23 1 5.7814 -7.9077 0.4624 24 1 3.4000 -8.2802 0.7252 25 1 4.5199 -8.9816 -1.3085 26 6 4.5040 -3.4493 -1.3050 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.7101 1.9712 2.0341 31 1 3.7709 0.2012 1.8569 32 1 5.1856 1.1886 1.4187 33 1 4.2826 3.3288 0.1693 34 1 3.2498 3.0232 -1.2656 35 1 5.4395 2.9034 -2.2605 36 1 6.1592 2.1613 -0.7927 37 1 4.2466 0.8952 -2.8307 38 1 5.7667 0.2207 -2.1706 39 1 4.9112 -0.5971 -3.0945 40 1 5.7540 -2.2034 -4.7516 41 1 5.8064 -4.6025 -4.2388 42 1 2.4540 -5.9738 0.0002 43 1 4.1576 -3.7954 -0.3424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187698434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:30 Heat of formation + Delta-G solvation = -74.779973 kcal Electronic energy + Delta-G solvation = -27622.022446 eV Core-core repulsion = 23826.026928 eV Total energy + Delta-G solvation = -3795.995518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00892 -39.34083 -37.58388 -36.73047 -36.08826 -33.82806 -32.21402 -31.32677 -29.68938 -29.40868 -27.62198 -26.26299 -25.23996 -24.22971 -22.38857 -21.91205 -20.86125 -19.94403 -18.95284 -17.74908 -17.13161 -16.53956 -16.31266 -15.68511 -15.52882 -15.22612 -14.76420 -14.33320 -14.07826 -13.60859 -13.43055 -13.25046 -13.08515 -12.98762 -12.67422 -12.51422 -12.40758 -12.35700 -11.99383 -11.76559 -11.66448 -11.52052 -11.36119 -11.13184 -10.94565 -10.82616 -10.61576 -10.54079 -10.35297 -10.23746 -9.93646 -9.53720 -9.19777 -8.91337 -8.40792 -7.61666 -7.49224 -6.78877 -4.40103 2.17602 2.28632 2.82008 2.89334 3.07606 3.09137 3.17107 3.28384 3.86644 3.92604 4.30257 4.53375 4.61823 4.81357 4.97112 5.02253 5.27003 5.27660 5.33819 5.48226 5.53020 5.60394 5.66578 5.69529 5.72233 5.76791 5.80487 5.87077 6.06653 6.11633 6.24398 6.33884 6.53137 6.57404 6.75025 6.99889 7.04809 7.21997 7.39544 7.67741 7.79108 7.89733 7.91394 8.03424 8.18813 8.51037 8.81228 8.84387 8.93627 10.15995 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.004437 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.709466 B = 6309.190113 C = 7283.889692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.320 6.320 3 C 0.462 3.538 4 O -0.520 6.520 5 C 0.177 3.823 6 C -0.155 4.155 7 C -0.112 4.112 8 C -0.137 4.137 9 C 0.094 3.906 10 N -0.614 5.614 11 C 0.582 3.418 12 O -0.515 6.515 13 C -0.121 4.121 14 C -0.246 4.246 15 C -0.099 4.099 16 C -0.212 4.212 17 C 0.100 3.900 18 C -0.463 4.463 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.782 5.782 22 Si 0.909 3.091 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.265 1.265 26 C -0.092 4.092 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.285 0.715 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 12.860 0.514 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.234 6.234 3 C 0.305 3.695 4 O -0.409 6.409 5 C 0.089 3.911 6 C -0.213 4.213 7 C -0.150 4.150 8 C -0.175 4.175 9 C -0.028 4.028 10 N -0.353 5.353 11 C 0.375 3.625 12 O -0.390 6.390 13 C -0.124 4.124 14 C -0.265 4.265 15 C -0.118 4.118 16 C -0.232 4.232 17 C 0.097 3.903 18 C -0.492 4.492 19 H 0.098 0.902 20 C -0.145 4.145 21 N -0.406 5.406 22 Si 0.733 3.267 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.190 1.190 26 C -0.112 4.112 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.546 12.767 1.244 12.839 hybrid contribution -0.341 -0.705 0.218 0.813 sum 0.205 12.062 1.462 12.152 Atomic orbital electron populations 1.23258 0.77264 1.03837 1.01612 1.86846 1.22437 1.31835 1.82266 1.24189 0.92143 0.81732 0.71484 1.90611 1.66960 1.36664 1.46642 1.20795 0.85372 0.89952 0.94943 1.22162 1.02164 1.04265 0.92733 1.22657 0.98419 0.93482 1.00463 1.22953 0.97560 0.96686 1.00291 1.22865 0.97206 0.93121 0.89651 1.48516 1.54445 1.04366 1.27932 1.18633 0.77990 0.79593 0.86234 1.90701 1.42089 1.77757 1.28417 1.19355 1.05402 0.93394 0.94248 1.21415 1.10517 0.99192 0.95416 1.20471 1.00313 0.93711 0.97263 1.21125 1.10582 0.94475 0.96994 1.17572 0.89474 0.93393 0.89843 1.19537 1.16842 0.93319 1.19468 0.90197 1.25942 0.93585 0.99740 0.95207 1.69790 1.07774 1.38206 1.24854 0.86359 0.79290 0.81619 0.79452 1.18748 1.20258 1.18994 1.21568 0.99941 0.89403 1.00287 0.92329 0.92399 0.88000 0.91578 0.89561 0.90541 0.89133 0.89583 0.89439 0.90150 0.91115 0.87828 0.86301 0.89019 0.88776 0.90427 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 101.05 1.07 1.58 16 2 O -0.32 -6.07 7.69 -46.52 -0.36 -6.43 16 3 C 0.46 8.03 6.77 36.01 0.24 8.27 16 4 O -0.52 -9.19 15.66 -18.75 -0.29 -9.48 16 5 C 0.18 2.66 0.80 -131.99 -0.11 2.55 16 6 C -0.16 -2.16 8.33 37.16 0.31 -1.86 16 7 C -0.11 -1.26 5.67 -24.89 -0.14 -1.40 16 8 C -0.14 -1.31 7.09 -24.58 -0.17 -1.49 16 9 C 0.09 1.24 4.90 -2.53 -0.01 1.22 16 10 N -0.61 -10.42 2.81 -158.16 -0.44 -10.87 16 11 C 0.58 12.58 6.84 -12.31 -0.08 12.50 16 12 O -0.51 -12.41 13.18 -16.44 -0.22 -12.63 16 13 C -0.12 -2.81 5.84 -105.04 -0.61 -3.43 16 14 C -0.25 -5.05 8.30 -38.92 -0.32 -5.37 16 15 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 16 C -0.21 -4.98 9.78 -38.81 -0.38 -5.35 16 17 C 0.10 2.61 5.56 -106.87 -0.59 2.01 16 18 C -0.46 -12.07 9.05 -37.73 -0.34 -12.41 16 19 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 20 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 21 N -0.78 -20.62 11.02 55.55 0.61 -20.01 16 22 Si 0.91 18.68 29.60 -169.99 -5.03 13.65 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 C -0.09 -2.41 8.23 -38.44 -0.32 -2.73 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.46 6.60 -51.93 -0.34 1.11 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.84 7.83 -51.93 -0.41 0.43 16 34 H 0.09 1.01 7.35 -51.93 -0.38 0.63 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.90 7.33 -51.92 -0.38 0.52 16 38 H 0.10 1.39 5.98 -51.93 -0.31 1.08 16 39 H 0.12 2.01 3.31 -52.51 -0.17 1.83 16 40 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.09 2.07 8.06 -52.48 -0.42 1.64 16 42 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 43 H 0.13 3.72 5.84 -52.49 -0.31 3.42 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -31.03 347.65 -8.10 -39.13 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.66 Total: 7.99 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.95 Total: -6.59 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.17 Total: -30.88 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.87 Total: -28.54 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.03 -8.10 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187698434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.652 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds