Wall clock time and date at job start Tue Mar 31 2020 12:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 116.99825 * 2 1 4 4 O 1.20823 * 120.00231 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99944 * 179.97438 * 3 2 1 6 6 C 1.53001 * 110.00321 * 276.10240 * 5 3 2 7 7 C 1.54325 * 109.88019 * 155.00149 * 5 3 2 8 8 C 1.55159 * 102.94371 * 218.39269 * 7 5 3 9 9 C 1.54907 * 101.57793 * 35.50296 * 8 7 5 10 10 N 1.47019 * 109.87984 * 37.20066 * 5 3 2 11 11 C 1.34781 * 125.64630 * 298.31944 * 10 5 3 12 12 O 1.21550 * 120.00079 * 354.10015 * 11 10 5 13 13 C 1.47893 * 119.99814 * 174.10213 * 11 10 5 14 14 C 1.39921 * 120.02692 * 350.51514 * 13 11 10 15 15 C 1.38321 * 120.35877 * 179.97438 * 14 13 11 16 16 C 1.37751 * 120.41266 * 359.97438 * 15 14 13 17 17 C 1.40749 * 120.03992 * 0.02562 * 16 15 14 18 18 C 1.41434 * 120.17856 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00009 * 25.03259 * 18 17 16 20 20 C 1.39941 * 120.00187 * 205.03553 * 18 17 16 21 21 N 1.30821 * 119.99970 * 18.03457 * 20 18 17 22 22 Si 1.86804 * 120.00195 * 198.04027 * 20 18 17 23 23 H 1.48500 * 109.47011 * 59.99355 * 22 20 18 24 24 H 1.48493 * 109.47457 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46775 * 299.99788 * 22 20 18 26 26 C 1.38992 * 120.02226 * 170.24445 * 13 11 10 27 27 H 1.09006 * 109.47178 * 299.99797 * 1 2 3 28 28 H 1.09000 * 109.47075 * 59.99329 * 1 2 3 29 29 H 1.08995 * 109.47095 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46789 * 298.90624 * 6 5 3 31 31 H 1.08998 * 109.46784 * 58.90081 * 6 5 3 32 32 H 1.08997 * 109.47258 * 178.90249 * 6 5 3 33 33 H 1.09001 * 110.71835 * 100.03261 * 7 5 3 34 34 H 1.08996 * 110.72051 * 336.76025 * 7 5 3 35 35 H 1.09001 * 111.00087 * 153.57939 * 8 7 5 36 36 H 1.08996 * 111.00525 * 277.39522 * 8 7 5 37 37 H 1.09010 * 110.36480 * 81.83086 * 9 8 7 38 38 H 1.08999 * 110.36923 * 204.03766 * 9 8 7 39 39 H 1.08002 * 119.81871 * 359.96164 * 14 13 11 40 40 H 1.07997 * 119.79430 * 180.02562 * 15 14 13 41 41 H 1.08008 * 119.98418 * 179.97438 * 16 15 14 42 42 H 0.97000 * 119.99999 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.20259 * 0.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0964 1.1500 1.4304 7 6 4.0217 2.6158 -0.6128 8 6 5.2775 2.2149 -1.4312 9 6 4.8776 0.8097 -1.9459 10 7 4.1235 0.2012 -0.8349 11 6 3.9709 -1.1206 -0.6201 12 8 3.4184 -1.5125 0.3891 13 6 4.4758 -2.0941 -1.6124 14 6 4.9306 -1.6510 -2.8592 15 6 5.4047 -2.5554 -3.7923 16 6 5.4352 -3.9023 -3.5050 17 6 4.9818 -4.3668 -2.2561 18 6 5.0112 -5.7491 -1.9582 19 1 5.7137 -6.3955 -2.4633 20 6 4.1301 -6.2793 -1.0091 21 7 3.0645 -5.6064 -0.6580 22 14 4.4754 -7.9478 -0.2433 23 1 5.7814 -7.9077 0.4624 24 1 3.4000 -8.2802 0.7252 25 1 4.5199 -8.9816 -1.3085 26 6 4.5040 -3.4493 -1.3050 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.7101 1.9712 2.0341 31 1 3.7709 0.2012 1.8569 32 1 5.1856 1.1886 1.4187 33 1 4.2826 3.3288 0.1693 34 1 3.2498 3.0232 -1.2656 35 1 5.4395 2.9034 -2.2605 36 1 6.1592 2.1613 -0.7927 37 1 4.2466 0.8952 -2.8307 38 1 5.7667 0.2207 -2.1706 39 1 4.9112 -0.5971 -3.0945 40 1 5.7540 -2.2034 -4.7516 41 1 5.8064 -4.6025 -4.2388 42 1 2.4540 -5.9738 0.0002 43 1 4.1576 -3.7954 -0.3424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187698434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:30 Heat of formation + Delta-G solvation = -91.850510 kcal Electronic energy + Delta-G solvation = -27622.762680 eV Core-core repulsion = 23826.026928 eV Total energy + Delta-G solvation = -3796.735752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30369 -40.80015 -39.12081 -38.33507 -37.46688 -35.63899 -33.60912 -32.41762 -31.41474 -31.17163 -28.83752 -27.56490 -26.87431 -25.58566 -23.86332 -23.15157 -22.50271 -21.36950 -20.35005 -19.45416 -18.48448 -17.96563 -17.63797 -17.27943 -16.94493 -16.72340 -16.39622 -15.79216 -15.51009 -15.07477 -14.79498 -14.56206 -14.53944 -14.42832 -14.17021 -13.87168 -13.56890 -13.49055 -13.45377 -13.21035 -12.98545 -12.91309 -12.80341 -12.58959 -12.46415 -12.30732 -11.88540 -11.86639 -11.72526 -11.64633 -11.59569 -11.14705 -11.04294 -10.56227 -9.79490 -9.43548 -9.31912 -8.64324 -6.35487 0.43876 0.91684 1.04167 1.36099 1.47862 1.50683 1.66894 1.95585 2.17454 2.21993 2.80859 3.24184 3.56985 3.68291 3.74800 3.83936 4.02840 4.10324 4.15650 4.17748 4.33467 4.47429 4.50995 4.52791 4.64428 4.67879 4.76292 4.81301 4.86862 4.94349 5.03871 5.12205 5.14532 5.23408 5.27315 5.29255 5.33795 5.41092 5.56798 5.88271 5.98967 6.08159 6.32655 6.46140 6.58257 6.65947 6.90586 6.97948 7.32575 8.32295 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.004437 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.709466 B = 6309.190113 C = 7283.889692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.456 3.544 4 O -0.527 6.527 5 C 0.167 3.833 6 C -0.151 4.151 7 C -0.105 4.105 8 C -0.118 4.118 9 C 0.076 3.924 10 N -0.609 5.609 11 C 0.578 3.422 12 O -0.553 6.553 13 C -0.133 4.133 14 C -0.225 4.225 15 C -0.097 4.097 16 C -0.219 4.219 17 C 0.068 3.932 18 C -0.501 4.501 19 H 0.082 0.918 20 C 0.032 3.968 21 N -0.825 5.825 22 Si 0.980 3.020 23 H -0.260 1.260 24 H -0.273 1.273 25 H -0.253 1.253 26 C -0.128 4.128 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.164 0.836 40 H 0.138 0.862 41 H 0.105 0.895 42 H 0.285 0.715 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 15.683 -0.979 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.299 3.701 4 O -0.416 6.416 5 C 0.081 3.919 6 C -0.209 4.209 7 C -0.143 4.143 8 C -0.155 4.155 9 C -0.045 4.045 10 N -0.345 5.345 11 C 0.370 3.630 12 O -0.432 6.432 13 C -0.136 4.136 14 C -0.244 4.244 15 C -0.115 4.115 16 C -0.238 4.238 17 C 0.065 3.935 18 C -0.530 4.530 19 H 0.100 0.900 20 C -0.183 4.183 21 N -0.451 5.451 22 Si 0.800 3.200 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.177 1.177 26 C -0.149 4.149 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.142 0.858 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.181 0.819 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.093 15.640 -0.287 15.782 hybrid contribution -0.825 -1.360 0.592 1.697 sum 1.268 14.280 0.304 14.339 Atomic orbital electron populations 1.23443 0.75816 1.04568 1.02687 1.86842 1.24314 1.33176 1.82439 1.24704 0.93179 0.81178 0.71088 1.90589 1.67396 1.36549 1.47102 1.21266 0.83862 0.91233 0.95569 1.22133 1.03279 1.03101 0.92372 1.22743 0.98982 0.91289 1.01247 1.22957 0.96942 0.94332 1.01280 1.23184 0.96889 0.95360 0.89089 1.48427 1.53752 1.03265 1.29082 1.18422 0.77906 0.81212 0.85498 1.90678 1.43797 1.78982 1.29701 1.19703 1.04963 0.92905 0.96010 1.22028 1.07213 1.01563 0.93571 1.20972 0.98989 0.92495 0.99070 1.21429 1.09903 0.96320 0.96181 1.17915 0.90623 0.93803 0.91119 1.19812 1.17970 0.93884 1.21375 0.89957 1.26811 0.92835 1.03535 0.95160 1.69899 1.08987 1.40258 1.25918 0.85288 0.79017 0.76973 0.78688 1.18446 1.19786 1.17688 1.21355 1.02850 0.91241 0.99445 0.91130 0.91379 0.87611 0.89288 0.93368 0.88709 0.86492 0.89783 0.85828 0.88737 0.90002 0.87801 0.81872 0.84399 0.87649 0.90432 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.56 113.37 1.20 2.05 16 2 O -0.35 -13.72 7.69 -44.52 -0.34 -14.06 16 3 C 0.46 15.51 6.77 71.24 0.48 15.99 16 4 O -0.53 -17.92 15.66 21.97 0.34 -17.57 16 5 C 0.17 4.72 0.80 3.21 0.00 4.73 16 6 C -0.15 -4.03 8.33 71.98 0.60 -3.43 16 7 C -0.10 -1.90 5.67 31.78 0.18 -1.72 16 8 C -0.12 -1.61 7.09 31.99 0.23 -1.38 16 9 C 0.08 1.69 4.90 86.86 0.43 2.11 16 10 N -0.61 -19.77 2.81 -772.57 -2.17 -21.94 16 11 C 0.58 25.47 6.84 86.80 0.59 26.06 16 12 O -0.55 -28.29 13.18 16.94 0.22 -28.06 16 13 C -0.13 -6.28 5.84 -20.13 -0.12 -6.40 16 14 C -0.23 -8.74 8.30 22.70 0.19 -8.55 16 15 C -0.10 -3.81 10.01 22.17 0.22 -3.59 16 16 C -0.22 -10.22 9.78 22.77 0.22 -9.99 16 17 C 0.07 3.69 5.56 -21.32 -0.12 3.57 16 18 C -0.50 -27.47 9.05 23.47 0.21 -27.26 16 19 H 0.08 4.26 7.91 -2.91 -0.02 4.23 16 20 C 0.03 1.66 5.13 85.26 0.44 2.10 16 21 N -0.83 -46.59 11.02 21.82 0.24 -46.34 16 22 Si 0.98 39.95 29.60 68.60 2.03 41.98 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 26 C -0.13 -7.14 8.23 23.01 0.19 -6.95 16 27 H 0.07 1.90 8.13 -2.38 -0.02 1.88 16 28 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 29 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.67 6.60 -2.39 -0.02 1.65 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.12 1.56 7.83 -2.39 -0.02 1.54 16 34 H 0.08 1.62 7.35 -2.39 -0.02 1.60 16 35 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.70 7.33 -2.38 -0.02 1.68 16 38 H 0.10 2.35 5.98 -2.39 -0.01 2.34 16 39 H 0.16 4.83 3.31 -2.93 -0.01 4.82 16 40 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 41 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 42 H 0.29 14.92 8.30 -92.71 -0.77 14.16 16 43 H 0.10 5.91 5.84 -2.91 -0.02 5.90 16 Total: -1.00 -74.35 347.65 6.30 -68.05 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 1.04 Total: 30.61 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 4.94 Total: -12.67 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -1.93 Total: -68.28 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: 0.22 Total: -59.70 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -74.35 6.30 -68.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187698434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.802 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds