Wall clock time and date at job start Tue Mar 31 2020 11:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30304 * 126.35457 * 2 1 4 4 N 1.28514 * 110.14960 * 179.97438 * 3 2 1 5 5 C 1.31288 * 109.91741 * 359.97438 * 4 3 2 6 6 S 1.76199 * 126.49873 * 179.97438 * 5 4 3 7 7 C 1.81004 * 100.00092 * 0.02796 * 6 5 4 8 8 H 1.08998 * 109.47109 * 304.99430 * 7 6 5 9 9 C 1.52997 * 109.47052 * 65.00100 * 7 6 5 10 10 C 1.53004 * 109.46784 * 184.99786 * 7 6 5 11 11 C 1.50701 * 109.47211 * 65.00334 * 10 7 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 7 13 13 C 1.37871 * 119.99694 * 180.27574 * 11 10 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 N 1.36791 * 107.00000 * 0.26158 * 5 4 3 20 20 C 1.40246 * 127.18046 * 179.71622 * 19 5 4 21 21 C 1.38842 * 120.06258 * 90.00114 * 20 19 5 22 22 C 1.38098 * 119.93808 * 180.02562 * 21 20 19 23 23 C 1.38303 * 120.06319 * 0.02562 * 22 21 20 24 24 C 1.38256 * 120.12708 * 0.02562 * 23 22 21 25 25 C 1.38145 * 120.06394 * 359.67643 * 24 23 22 26 26 C 1.50703 * 120.03318 * 180.29920 * 25 24 23 27 27 H 1.09000 * 109.47461 * 90.02678 * 1 2 3 28 28 H 1.09006 * 109.47212 * 210.02478 * 1 2 3 29 29 H 1.09002 * 109.47722 * 330.02607 * 1 2 3 30 30 H 1.09000 * 109.46991 * 180.02562 * 9 7 6 31 31 H 1.09004 * 109.46837 * 299.99581 * 9 7 6 32 32 H 1.08998 * 109.47711 * 59.99698 * 9 7 6 33 33 H 1.09000 * 109.47211 * 304.99361 * 10 7 6 34 34 H 1.09007 * 109.46376 * 184.99903 * 10 7 6 35 35 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.03128 * 359.97438 * 21 20 19 37 37 H 1.07998 * 119.97290 * 180.02562 * 22 21 20 38 38 H 1.07995 * 119.93699 * 179.97438 * 23 22 21 39 39 H 1.08003 * 119.96244 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47034 * 270.32758 * 26 25 24 41 41 H 1.08999 * 109.46766 * 30.31780 * 26 25 24 42 42 H 1.08993 * 109.47301 * 150.32044 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5134 0.6908 0.0005 5 6 3.5984 -0.6194 0.0015 6 16 5.0797 -1.5735 0.0018 7 6 6.3093 -0.2451 0.0015 8 1 6.1236 0.4216 -0.8406 9 6 6.2082 0.5436 1.3086 10 6 7.7103 -0.8471 -0.1239 11 6 7.8498 -1.5198 -1.4652 12 1 7.0218 -1.5185 -2.1587 13 6 9.0323 -2.1422 -1.8045 14 7 10.0404 -2.1441 -0.9599 15 14 9.2026 -2.9828 -3.4640 16 1 8.9978 -1.9871 -4.5466 17 1 10.5608 -3.5712 -3.5838 18 1 8.1849 -4.0579 -3.5811 19 7 2.3189 -1.1032 -0.0045 20 6 1.9214 -2.4481 -0.0114 21 6 1.7206 -3.1201 1.1868 22 6 1.3296 -4.4446 1.1770 23 6 1.1387 -5.1018 -0.0248 24 6 1.3389 -4.4354 -1.2195 25 6 1.7241 -3.1087 -1.2159 26 6 1.9356 -2.3811 -2.5186 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 6.9483 1.3438 1.3082 31 1 5.2101 0.9725 1.3979 32 1 6.3939 -0.1231 2.1507 33 1 7.8629 -1.5803 0.6680 34 1 8.4549 -0.0559 -0.0350 35 1 10.8722 -2.5824 -1.1985 36 1 1.8708 -2.6078 2.1257 37 1 1.1729 -4.9678 2.1087 38 1 0.8334 -6.1376 -0.0301 39 1 1.1894 -4.9513 -2.1565 40 1 2.9721 -2.4971 -2.8353 41 1 1.2747 -2.7976 -3.2787 42 1 1.7130 -1.3227 -2.3839 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188203092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:32 Heat of formation + Delta-G solvation = 90.447831 kcal Electronic energy + Delta-G solvation = -24112.085862 eV Core-core repulsion = 20798.300782 eV Total energy + Delta-G solvation = -3313.785080 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.83785 -39.61154 -34.97903 -34.47957 -32.93261 -32.40014 -31.95184 -30.07384 -27.99927 -27.25487 -27.02403 -23.77248 -23.29792 -22.38378 -21.87007 -21.01820 -20.20280 -18.18043 -16.62268 -16.49423 -16.35008 -15.95201 -15.02584 -14.90492 -14.55744 -14.48600 -14.19912 -13.75308 -13.48141 -13.19496 -13.03994 -12.79059 -12.63374 -12.51248 -12.29944 -11.95577 -11.78606 -11.65013 -11.59697 -11.31718 -11.06139 -10.82728 -10.70855 -10.54494 -10.36356 -10.25203 -9.64789 -9.44821 -9.37654 -9.19790 -9.16339 -8.96429 -8.40482 -7.05019 -6.05474 -4.07872 0.81046 1.03703 1.62751 1.77825 2.68387 2.96073 2.99238 3.32204 3.32649 3.36203 3.39226 4.37013 4.42933 4.50907 4.53328 4.72486 4.84804 4.97930 5.13076 5.29647 5.29957 5.31787 5.39876 5.46767 5.53960 5.60348 5.61654 5.77424 5.86694 5.89926 5.95239 6.01460 6.12591 6.14680 6.18848 6.19618 6.49259 6.58621 6.64673 6.83734 7.07847 7.50188 7.55174 7.91244 8.27906 8.85210 8.96519 9.56324 11.05551 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.004631 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.600323 B = 6044.924694 C = 7132.038622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.171 3.829 3 N -0.286 5.286 4 N -0.296 5.296 5 C 0.176 3.824 6 S 0.021 5.979 7 C -0.056 4.056 8 H 0.091 0.909 9 C -0.147 4.147 10 C 0.038 3.962 11 C -0.523 4.523 12 H 0.062 0.938 13 C 0.062 3.938 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 N -0.426 5.426 20 C 0.108 3.892 21 C -0.091 4.091 22 C -0.117 4.117 23 C -0.098 4.098 24 C -0.113 4.113 25 C -0.054 4.054 26 C -0.122 4.122 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.027 0.973 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.431 -4.684 2.861 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 N -0.125 5.125 4 N -0.139 5.139 5 C -0.196 4.196 6 S 0.251 5.749 7 C -0.186 4.186 8 H 0.109 0.891 9 C -0.207 4.207 10 C -0.001 4.001 11 C -0.561 4.561 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 N -0.119 5.119 20 C 0.017 3.983 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.055 4.055 26 C -0.179 4.179 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.644 -4.414 2.874 21.305 hybrid contribution -0.243 -0.491 -0.881 1.037 sum -20.887 -4.905 1.993 21.547 Atomic orbital electron populations 1.20128 0.84039 1.04089 1.03689 1.25058 0.96585 0.82015 1.06062 1.73893 0.96941 1.23790 1.17922 1.74691 1.11093 1.06669 1.21457 1.27839 0.91232 0.95409 1.05092 1.86196 0.88020 1.09961 1.90709 1.23662 0.97992 0.96007 1.00905 0.89111 1.22123 1.02493 0.99922 0.96117 1.19093 0.86470 0.96522 0.98018 1.21208 0.98973 1.34798 1.01151 0.91986 1.24968 0.95793 0.96186 0.97062 1.69939 1.03774 1.43921 1.35577 0.86662 0.77141 0.79928 0.84392 1.20138 1.21269 1.20103 1.43721 1.05273 1.05322 1.57598 1.17345 1.04997 0.81986 0.93962 1.21206 0.97922 0.95053 0.96831 1.21034 1.00184 0.93676 0.98697 1.21305 0.97975 1.00087 0.92226 1.20988 1.00275 0.92995 0.98907 1.20030 0.96737 0.94462 0.94318 1.20857 1.03638 0.99956 0.93424 0.89990 0.90716 0.88866 0.91923 0.91765 0.92698 0.95514 0.94092 0.92807 0.85346 0.84980 0.85195 0.84933 0.89633 0.90772 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.23 36.00 0.37 -0.22 16 2 C 0.17 2.57 7.54 -153.78 -1.16 1.41 16 3 N -0.29 -5.26 12.17 33.04 0.40 -4.86 16 4 N -0.30 -5.93 9.74 30.73 0.30 -5.63 16 5 C 0.18 3.30 7.73 -88.10 -0.68 2.62 16 6 S 0.02 0.42 20.76 -107.50 -2.23 -1.81 16 7 C -0.06 -1.21 2.29 -26.73 -0.06 -1.28 16 8 H 0.09 2.05 8.14 -51.92 -0.42 1.63 16 9 C -0.15 -2.81 9.01 37.16 0.33 -2.47 16 10 C 0.04 0.95 4.44 -27.88 -0.12 0.83 16 11 C -0.52 -14.34 8.53 -34.44 -0.29 -14.64 16 12 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 N -0.43 -6.66 1.92 -57.63 -0.11 -6.77 16 20 C 0.11 1.43 5.14 -83.58 -0.43 1.00 16 21 C -0.09 -1.04 9.97 -39.41 -0.39 -1.43 16 22 C -0.12 -1.06 10.04 -39.61 -0.40 -1.46 16 23 C -0.10 -0.83 10.04 -39.55 -0.40 -1.23 16 24 C -0.11 -1.09 9.70 -39.61 -0.38 -1.47 16 25 C -0.05 -0.65 5.89 -104.45 -0.62 -1.27 16 26 C -0.12 -1.46 9.77 36.01 0.35 -1.11 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.62 7.96 -51.93 -0.41 0.21 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.23 5.91 -51.93 -0.31 0.92 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 42 H 0.06 0.85 7.03 -51.93 -0.37 0.48 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -32.19 366.79 -10.49 -42.67 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.11 Total: -1.03 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -3.98 Total: -19.07 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 1.33 Total: -42.73 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.23 Total: -1.81 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.19 -10.49 -42.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188203092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.123 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds