Wall clock time and date at job start Tue Mar 31 2020 11:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30304 * 126.35457 * 2 1 4 4 N 1.28514 * 110.14960 * 179.97438 * 3 2 1 5 5 C 1.31288 * 109.91741 * 359.97438 * 4 3 2 6 6 S 1.76199 * 126.49873 * 179.97438 * 5 4 3 7 7 C 1.81004 * 100.00092 * 0.02796 * 6 5 4 8 8 H 1.08998 * 109.47109 * 304.99430 * 7 6 5 9 9 C 1.52997 * 109.47052 * 65.00100 * 7 6 5 10 10 C 1.53004 * 109.46784 * 184.99786 * 7 6 5 11 11 C 1.50701 * 109.47211 * 65.00334 * 10 7 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 7 13 13 C 1.37871 * 119.99694 * 180.27574 * 11 10 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 N 1.36791 * 107.00000 * 0.26158 * 5 4 3 20 20 C 1.40246 * 127.18046 * 179.71622 * 19 5 4 21 21 C 1.38842 * 120.06258 * 90.00114 * 20 19 5 22 22 C 1.38098 * 119.93808 * 180.02562 * 21 20 19 23 23 C 1.38303 * 120.06319 * 0.02562 * 22 21 20 24 24 C 1.38256 * 120.12708 * 0.02562 * 23 22 21 25 25 C 1.38145 * 120.06394 * 359.67643 * 24 23 22 26 26 C 1.50703 * 120.03318 * 180.29920 * 25 24 23 27 27 H 1.09000 * 109.47461 * 90.02678 * 1 2 3 28 28 H 1.09006 * 109.47212 * 210.02478 * 1 2 3 29 29 H 1.09002 * 109.47722 * 330.02607 * 1 2 3 30 30 H 1.09000 * 109.46991 * 180.02562 * 9 7 6 31 31 H 1.09004 * 109.46837 * 299.99581 * 9 7 6 32 32 H 1.08998 * 109.47711 * 59.99698 * 9 7 6 33 33 H 1.09000 * 109.47211 * 304.99361 * 10 7 6 34 34 H 1.09007 * 109.46376 * 184.99903 * 10 7 6 35 35 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.03128 * 359.97438 * 21 20 19 37 37 H 1.07998 * 119.97290 * 180.02562 * 22 21 20 38 38 H 1.07995 * 119.93699 * 179.97438 * 23 22 21 39 39 H 1.08003 * 119.96244 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47034 * 270.32758 * 26 25 24 41 41 H 1.08999 * 109.46766 * 30.31780 * 26 25 24 42 42 H 1.08993 * 109.47301 * 150.32044 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5134 0.6908 0.0005 5 6 3.5984 -0.6194 0.0015 6 16 5.0797 -1.5735 0.0018 7 6 6.3093 -0.2451 0.0015 8 1 6.1236 0.4216 -0.8406 9 6 6.2082 0.5436 1.3086 10 6 7.7103 -0.8471 -0.1239 11 6 7.8498 -1.5198 -1.4652 12 1 7.0218 -1.5185 -2.1587 13 6 9.0323 -2.1422 -1.8045 14 7 10.0404 -2.1441 -0.9599 15 14 9.2026 -2.9828 -3.4640 16 1 8.9978 -1.9871 -4.5466 17 1 10.5608 -3.5712 -3.5838 18 1 8.1849 -4.0579 -3.5811 19 7 2.3189 -1.1032 -0.0045 20 6 1.9214 -2.4481 -0.0114 21 6 1.7206 -3.1201 1.1868 22 6 1.3296 -4.4446 1.1770 23 6 1.1387 -5.1018 -0.0248 24 6 1.3389 -4.4354 -1.2195 25 6 1.7241 -3.1087 -1.2159 26 6 1.9356 -2.3811 -2.5186 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 6.9483 1.3438 1.3082 31 1 5.2101 0.9725 1.3979 32 1 6.3939 -0.1231 2.1507 33 1 7.8629 -1.5803 0.6680 34 1 8.4549 -0.0559 -0.0350 35 1 10.8722 -2.5824 -1.1985 36 1 1.8708 -2.6078 2.1257 37 1 1.1729 -4.9678 2.1087 38 1 0.8334 -6.1376 -0.0301 39 1 1.1894 -4.9513 -2.1565 40 1 2.9721 -2.4971 -2.8353 41 1 1.2747 -2.7976 -3.2787 42 1 1.7130 -1.3227 -2.3839 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188203092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:31 Heat of formation + Delta-G solvation = 75.833336 kcal Electronic energy + Delta-G solvation = -24112.719595 eV Core-core repulsion = 20798.300782 eV Total energy + Delta-G solvation = -3314.418812 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.11463 -40.46234 -36.56633 -35.90044 -34.15061 -33.77152 -33.35520 -30.98720 -29.61040 -28.65354 -27.96081 -25.29396 -24.82051 -23.53917 -22.83528 -22.55801 -21.48642 -19.30756 -18.52327 -17.82697 -17.68790 -16.82524 -16.59639 -16.45911 -15.99606 -15.42593 -15.18510 -14.88275 -14.68691 -14.37522 -14.24150 -13.96960 -13.78117 -13.64527 -13.45559 -13.34301 -13.20070 -13.08466 -12.81251 -12.65176 -12.54136 -12.48019 -12.41289 -12.24255 -11.82136 -11.57530 -11.44186 -11.22280 -11.06649 -10.80318 -10.55319 -10.01458 -9.78693 -8.60413 -8.20761 -6.30252 -0.02682 0.15315 0.26476 0.51249 1.23743 1.40050 1.42352 1.50098 1.59402 1.63912 2.40803 2.55732 3.14047 3.36787 3.67864 3.74830 3.86817 4.03933 4.05322 4.17457 4.26316 4.28483 4.37912 4.47444 4.50087 4.52272 4.56858 4.59112 4.68714 4.82626 4.85462 4.86689 4.95519 5.01547 5.06101 5.21367 5.27680 5.36333 5.37624 5.42884 5.46586 5.71085 5.75281 6.04469 6.15229 6.80440 7.37817 7.50842 8.90673 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.004631 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.600323 B = 6044.924694 C = 7132.038622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.190 3.810 3 N -0.325 5.325 4 N -0.322 5.322 5 C 0.161 3.839 6 S 0.016 5.984 7 C -0.050 4.050 8 H 0.074 0.926 9 C -0.136 4.136 10 C 0.047 3.953 11 C -0.535 4.535 12 H 0.060 0.940 13 C 0.011 3.989 14 N -0.928 5.928 15 Si 0.955 3.045 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.266 1.266 19 N -0.416 5.416 20 C 0.074 3.926 21 C -0.103 4.103 22 C -0.111 4.111 23 C -0.088 4.088 24 C -0.112 4.112 25 C -0.070 4.070 26 C -0.117 4.117 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.008 0.992 34 H 0.020 0.980 35 H 0.265 0.735 36 H 0.124 0.876 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.140 -6.998 2.350 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 N -0.165 5.165 4 N -0.165 5.165 5 C -0.213 4.213 6 S 0.245 5.755 7 C -0.180 4.180 8 H 0.093 0.907 9 C -0.195 4.195 10 C 0.009 3.991 11 C -0.573 4.573 12 H 0.078 0.922 13 C -0.188 4.188 14 N -0.568 5.568 15 Si 0.780 3.220 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.191 1.191 19 N -0.108 5.108 20 C -0.015 4.015 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.072 4.072 26 C -0.174 4.174 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.178 0.822 38 H 0.183 0.817 39 H 0.175 0.825 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -23.376 -6.730 2.365 24.440 hybrid contribution 0.424 0.173 -0.691 0.829 sum -22.952 -6.558 1.674 23.929 Atomic orbital electron populations 1.20414 0.80206 1.05769 1.05393 1.26016 0.98373 0.81096 1.02389 1.73831 0.96738 1.25396 1.20497 1.74585 1.12479 1.07530 1.21947 1.27418 0.91895 0.95171 1.06818 1.85922 0.88583 1.09278 1.91691 1.23354 0.96752 0.96308 1.01563 0.90736 1.22017 1.02680 0.99868 0.94971 1.18863 0.88314 0.95283 0.96677 1.21485 0.99058 1.34918 1.01883 0.92181 1.25801 0.95419 0.96832 1.00758 1.70057 1.04299 1.44879 1.37519 0.85643 0.77443 0.79058 0.79861 1.19533 1.20632 1.19092 1.43821 1.04047 1.06696 1.56212 1.17687 1.07345 0.81098 0.95376 1.21319 0.98702 0.96217 0.95987 1.21410 0.98579 0.92566 1.00409 1.21756 0.95984 1.01514 0.91319 1.21337 0.99094 0.91906 1.00678 1.20148 0.97877 0.95630 0.93522 1.20797 1.02823 0.99097 0.94689 0.88094 0.88765 0.87352 0.91236 0.91743 0.92030 0.97406 0.96199 0.92638 0.85762 0.82163 0.81667 0.82485 0.92003 0.87846 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.23 71.23 0.73 -0.29 16 2 C 0.19 5.61 7.54 137.55 1.04 6.65 16 3 N -0.33 -12.14 12.17 -49.40 -0.60 -12.74 16 4 N -0.32 -13.33 9.74 -56.69 -0.55 -13.89 16 5 C 0.16 6.20 7.73 179.47 1.39 7.58 16 6 S 0.02 0.66 20.76 -56.49 -1.17 -0.51 16 7 C -0.05 -2.26 2.29 30.59 0.07 -2.19 16 8 H 0.07 3.54 8.14 -2.40 -0.02 3.52 16 9 C -0.14 -5.37 9.01 71.98 0.65 -4.72 16 10 C 0.05 2.49 4.44 29.85 0.13 2.62 16 11 C -0.54 -30.13 8.53 25.60 0.22 -29.91 16 12 H 0.06 3.34 7.60 -2.91 -0.02 3.32 16 13 C 0.01 0.60 5.46 84.65 0.46 1.06 16 14 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 15 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 N -0.42 -13.00 1.92 -336.25 -0.64 -13.64 16 20 C 0.07 1.90 5.14 38.07 0.20 2.10 16 21 C -0.10 -2.18 9.97 22.38 0.22 -1.96 16 22 C -0.11 -1.63 10.04 22.25 0.22 -1.41 16 23 C -0.09 -1.11 10.04 22.29 0.22 -0.89 16 24 C -0.11 -1.77 9.70 22.25 0.22 -1.55 16 25 C -0.07 -1.58 5.89 -19.75 -0.12 -1.69 16 26 C -0.12 -2.72 9.77 71.24 0.70 -2.02 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.31 7.96 -2.38 -0.02 1.29 16 29 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.06 2.55 5.91 -2.38 -0.01 2.53 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 37 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 1.67 8.09 -2.39 -0.02 1.65 16 42 H 0.04 1.16 7.03 -2.39 -0.02 1.14 16 Total: -1.00 -72.34 366.79 6.70 -65.64 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.01 Total: 10.75 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 6.35 Total: -26.62 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -1.51 Total: -95.43 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -1.17 Total: -0.51 kcal Total: -72.34 6.70 -65.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188203092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.476 kcal (2) G-P(sol) polarization free energy of solvation -72.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds