Wall clock time and date at job start Tue Mar 31 2020 11:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37986 * 120.07633 * 2 1 4 4 C 1.38333 * 120.14761 * 180.28035 * 3 2 1 5 5 C 1.38386 * 120.29241 * 359.76208 * 4 3 2 6 6 C 1.37933 * 120.14260 * 359.97438 * 5 4 3 7 7 C 1.39553 * 120.07502 * 179.76893 * 2 1 3 8 8 C 1.47835 * 120.14281 * 359.97438 * 7 2 1 9 9 N 1.31270 * 126.46215 * 311.09556 * 8 7 2 10 10 N 1.28514 * 109.95885 * 180.02562 * 9 8 7 11 11 C 1.31444 * 110.07824 * 0.02562 * 10 9 8 12 12 S 1.76211 * 126.37955 * 179.97438 * 11 10 9 13 13 C 1.80997 * 99.99795 * 0.02562 * 12 11 10 14 14 H 1.09000 * 109.47366 * 304.99943 * 13 12 11 15 15 C 1.52994 * 109.47452 * 65.00104 * 13 12 11 16 16 C 1.53005 * 109.46722 * 185.00311 * 13 12 11 17 17 C 1.50696 * 109.47217 * 64.99832 * 16 13 12 18 18 H 1.07995 * 120.00551 * 0.02562 * 17 16 13 19 19 C 1.37886 * 119.99610 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99891 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47338 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47245 * 119.99926 * 21 19 17 24 24 H 1.48500 * 109.47055 * 240.00345 * 21 19 17 25 25 N 1.36566 * 107.23758 * 0.26063 * 11 10 9 26 26 C 1.46498 * 127.17240 * 179.71688 * 25 11 10 27 27 H 1.09001 * 109.46830 * 270.22966 * 1 2 3 28 28 H 1.09000 * 109.47316 * 30.22600 * 1 2 3 29 29 H 1.08997 * 109.47121 * 150.23647 * 1 2 3 30 30 H 1.08000 * 119.92319 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.85715 * 179.74830 * 4 3 2 32 32 H 1.07994 * 119.92881 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.07369 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.47809 * 179.97438 * 15 13 12 35 35 H 1.09000 * 109.46967 * 59.99595 * 15 13 12 36 36 H 1.08997 * 109.47061 * 300.00303 * 15 13 12 37 37 H 1.09005 * 109.47092 * 185.00493 * 16 13 12 38 38 H 1.09000 * 109.46873 * 304.99723 * 16 13 12 39 39 H 0.96996 * 119.99556 * 180.02562 * 20 19 17 40 40 H 1.08993 * 109.47240 * 95.28997 * 26 25 11 41 41 H 1.09000 * 109.46836 * 215.29542 * 26 25 11 42 42 H 1.09003 * 109.47197 * 335.28879 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0059 5 6 4.2814 0.0018 -0.0068 6 6 3.6023 -1.1988 -0.0013 7 6 2.2063 -1.2076 0.0049 8 6 1.4720 -2.4907 0.0106 9 7 0.4825 -2.8197 0.8080 10 7 0.0790 -4.0097 0.5385 11 6 0.7870 -4.5137 -0.4477 12 16 0.5967 -6.1146 -1.1592 13 6 -0.7719 -6.7438 -0.1558 14 1 -0.5101 -6.6747 0.9001 15 6 -2.0269 -5.9114 -0.4255 16 6 -1.0412 -8.2053 -0.5197 17 6 0.1508 -9.0454 -0.1399 18 1 1.0140 -8.5834 0.3159 19 6 0.1390 -10.4043 -0.3735 20 7 -0.9127 -10.9672 -0.9272 21 14 1.6163 -11.4458 0.0979 22 1 2.6611 -10.5792 0.7001 23 1 1.2008 -12.4776 1.0818 24 1 2.1617 -12.1085 -1.1139 25 7 1.7016 -3.5680 -0.8138 26 6 2.7139 -3.6767 -1.8672 27 1 -0.3633 0.0041 1.0277 28 1 -0.3634 0.8879 -0.5173 29 1 -0.3633 -0.8921 -0.5101 30 1 1.6585 2.1294 0.0004 31 1 4.1183 2.1331 -0.0099 32 1 5.3613 0.0100 -0.0109 33 1 4.1494 -2.1301 -0.0025 34 1 -2.8513 -6.2906 0.1784 35 1 -2.2887 -5.9806 -1.4814 36 1 -1.8350 -4.8703 -0.1663 37 1 -1.9207 -8.5578 0.0190 38 1 -1.2158 -8.2863 -1.5926 39 1 -0.9212 -11.9232 -1.0911 40 1 2.3300 -3.2354 -2.7869 41 1 3.6163 -3.1483 -1.5597 42 1 2.9487 -4.7272 -2.0386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188250231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:20 Heat of formation + Delta-G solvation = 88.117983 kcal Electronic energy + Delta-G solvation = -23421.200416 eV Core-core repulsion = 20107.314306 eV Total energy + Delta-G solvation = -3313.886110 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.61259 -39.45270 -35.06693 -34.49477 -33.31426 -32.22343 -32.01689 -29.41494 -27.72785 -27.42455 -27.05388 -23.66814 -23.32288 -22.53796 -21.94701 -20.76707 -20.26868 -17.71792 -16.70399 -16.43413 -16.34650 -16.01310 -15.60160 -15.11165 -14.81192 -14.50922 -13.97918 -13.92477 -13.59489 -13.39423 -13.07901 -12.94539 -12.59361 -12.38246 -12.26859 -11.89600 -11.77150 -11.56900 -11.41077 -11.28791 -11.11371 -10.85083 -10.75899 -10.52360 -10.31981 -10.14037 -9.94847 -9.53788 -9.49191 -9.18733 -9.07952 -8.78580 -8.43450 -7.08760 -6.07968 -4.10390 0.72187 1.06728 1.57743 1.88614 2.66657 2.88636 2.94901 3.28334 3.36296 3.41181 3.46166 4.12208 4.41370 4.51588 4.56073 4.58506 4.71351 4.96534 5.01031 5.10784 5.25427 5.29478 5.36181 5.39880 5.52065 5.59375 5.66905 5.73733 5.75981 5.87184 6.02354 6.03833 6.14417 6.15532 6.17243 6.31563 6.56327 6.60378 6.62282 6.79757 6.81588 7.48216 7.52416 7.89297 8.25357 8.80491 8.94917 9.54189 11.03052 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.003019 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.450818 B = 9272.332647 C =10024.253237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.043 4.043 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.125 4.125 6 C -0.099 4.099 7 C -0.009 4.009 8 C 0.199 3.801 9 N -0.265 5.265 10 N -0.296 5.296 11 C 0.171 3.829 12 S 0.015 5.985 13 C -0.053 4.053 14 H 0.092 0.908 15 C -0.147 4.147 16 C 0.036 3.964 17 C -0.523 4.523 18 H 0.064 0.936 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.284 1.284 25 N -0.465 5.465 26 C 0.072 3.928 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.655 23.204 -2.620 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.045 4.045 3 C -0.139 4.139 4 C -0.124 4.124 5 C -0.143 4.143 6 C -0.118 4.118 7 C -0.012 4.012 8 C -0.069 4.069 9 N -0.106 5.106 10 N -0.141 5.141 11 C -0.201 4.201 12 S 0.245 5.755 13 C -0.182 4.182 14 H 0.110 0.890 15 C -0.207 4.207 16 C -0.002 4.002 17 C -0.561 4.561 18 H 0.082 0.918 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 N -0.159 5.159 26 C -0.071 4.071 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.134 22.547 -2.492 24.099 hybrid contribution 1.215 -0.314 0.246 1.279 sum 9.349 22.233 -2.246 24.223 Atomic orbital electron populations 1.20819 0.90269 1.02525 1.03383 1.19980 0.96636 0.91448 0.96438 1.20986 0.94230 0.97272 1.01401 1.21263 0.94224 0.98192 0.98761 1.21010 1.00028 0.91964 1.01312 1.21206 0.92594 0.98666 0.99374 1.17347 0.91829 0.87772 1.04271 1.22709 0.99569 0.90194 0.94382 1.74317 1.08938 1.07276 1.20025 1.74734 1.23030 1.03219 1.13146 1.27717 0.92847 0.99638 0.99925 1.85995 1.47553 0.96382 1.45532 1.23660 0.92543 1.01242 1.00777 0.89009 1.22125 0.96819 1.00134 1.01583 1.19116 0.98289 0.84957 0.97877 1.21299 1.01652 0.92507 1.40690 0.91811 1.24992 0.96085 0.98042 0.95025 1.69962 1.28820 1.11250 1.43134 0.86529 0.82949 0.80354 0.78226 1.19557 1.20974 1.20975 1.46377 1.28161 1.11981 1.29414 1.22178 0.90331 1.05395 0.89225 0.90012 0.91687 0.91374 0.85404 0.85691 0.85526 0.85872 0.91883 0.92664 0.91713 0.94025 0.95462 0.92895 0.89898 0.89251 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.18 36.00 0.33 -0.90 16 2 C -0.04 -0.47 5.91 -104.22 -0.62 -1.09 16 3 C -0.12 -1.03 9.69 -39.64 -0.38 -1.42 16 4 C -0.11 -0.80 10.04 -39.49 -0.40 -1.19 16 5 C -0.13 -1.00 10.03 -39.64 -0.40 -1.40 16 6 C -0.10 -0.99 8.72 -39.19 -0.34 -1.33 16 7 C -0.01 -0.12 5.68 -104.97 -0.60 -0.71 16 8 C 0.20 3.06 6.37 -153.75 -0.98 2.08 16 9 N -0.26 -4.84 11.12 32.59 0.36 -4.48 16 10 N -0.30 -5.82 9.72 30.71 0.30 -5.52 16 11 C 0.17 3.10 7.76 -88.18 -0.68 2.42 16 12 S 0.02 0.29 20.45 -107.50 -2.20 -1.90 16 13 C -0.05 -1.11 2.29 -26.73 -0.06 -1.17 16 14 H 0.09 2.03 8.14 -51.92 -0.42 1.60 16 15 C -0.15 -2.73 9.01 37.15 0.33 -2.39 16 16 C 0.04 0.90 4.44 -27.88 -0.12 0.78 16 17 C -0.52 -14.16 8.53 -34.44 -0.29 -14.45 16 18 H 0.06 1.71 7.60 -52.49 -0.40 1.32 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 21 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 N -0.47 -6.99 3.24 -121.46 -0.39 -7.38 16 26 C 0.07 0.74 10.89 59.85 0.65 1.39 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.07 0.89 6.73 -51.93 -0.35 0.55 16 30 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.12 1.11 6.84 -52.48 -0.36 0.76 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.20 5.91 -51.93 -0.31 0.89 16 37 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.72 5.78 -51.93 -0.30 0.42 16 42 H 0.10 1.01 7.70 -51.93 -0.40 0.61 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -31.92 360.78 -10.33 -42.25 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.90 Total: -1.63 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -3.65 Total: -17.80 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 1.00 Total: -42.61 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.20 Total: -1.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.92 -10.33 -42.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188250231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.371 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds