Wall clock time and date at job start Tue Mar 31 2020 11:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37986 * 120.07633 * 2 1 4 4 C 1.38333 * 120.14761 * 180.28035 * 3 2 1 5 5 C 1.38386 * 120.29241 * 359.76208 * 4 3 2 6 6 C 1.37933 * 120.14260 * 359.97438 * 5 4 3 7 7 C 1.39553 * 120.07502 * 179.76893 * 2 1 3 8 8 C 1.47835 * 120.14281 * 359.97438 * 7 2 1 9 9 N 1.31270 * 126.46215 * 311.09556 * 8 7 2 10 10 N 1.28514 * 109.95885 * 180.02562 * 9 8 7 11 11 C 1.31444 * 110.07824 * 0.02562 * 10 9 8 12 12 S 1.76211 * 126.37955 * 179.97438 * 11 10 9 13 13 C 1.80997 * 99.99795 * 0.02562 * 12 11 10 14 14 H 1.09000 * 109.47366 * 304.99943 * 13 12 11 15 15 C 1.52994 * 109.47452 * 65.00104 * 13 12 11 16 16 C 1.53005 * 109.46722 * 185.00311 * 13 12 11 17 17 C 1.50696 * 109.47217 * 64.99832 * 16 13 12 18 18 H 1.07995 * 120.00551 * 0.02562 * 17 16 13 19 19 C 1.37886 * 119.99610 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99891 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47338 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47245 * 119.99926 * 21 19 17 24 24 H 1.48500 * 109.47055 * 240.00345 * 21 19 17 25 25 N 1.36566 * 107.23758 * 0.26063 * 11 10 9 26 26 C 1.46498 * 127.17240 * 179.71688 * 25 11 10 27 27 H 1.09001 * 109.46830 * 270.22966 * 1 2 3 28 28 H 1.09000 * 109.47316 * 30.22600 * 1 2 3 29 29 H 1.08997 * 109.47121 * 150.23647 * 1 2 3 30 30 H 1.08000 * 119.92319 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.85715 * 179.74830 * 4 3 2 32 32 H 1.07994 * 119.92881 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.07369 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.47809 * 179.97438 * 15 13 12 35 35 H 1.09000 * 109.46967 * 59.99595 * 15 13 12 36 36 H 1.08997 * 109.47061 * 300.00303 * 15 13 12 37 37 H 1.09005 * 109.47092 * 185.00493 * 16 13 12 38 38 H 1.09000 * 109.46873 * 304.99723 * 16 13 12 39 39 H 0.96996 * 119.99556 * 180.02562 * 20 19 17 40 40 H 1.08993 * 109.47240 * 95.28997 * 26 25 11 41 41 H 1.09000 * 109.46836 * 215.29542 * 26 25 11 42 42 H 1.09003 * 109.47197 * 335.28879 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0059 5 6 4.2814 0.0018 -0.0068 6 6 3.6023 -1.1988 -0.0013 7 6 2.2063 -1.2076 0.0049 8 6 1.4720 -2.4907 0.0106 9 7 0.4825 -2.8197 0.8080 10 7 0.0790 -4.0097 0.5385 11 6 0.7870 -4.5137 -0.4477 12 16 0.5967 -6.1146 -1.1592 13 6 -0.7719 -6.7438 -0.1558 14 1 -0.5101 -6.6747 0.9001 15 6 -2.0269 -5.9114 -0.4255 16 6 -1.0412 -8.2053 -0.5197 17 6 0.1508 -9.0454 -0.1399 18 1 1.0140 -8.5834 0.3159 19 6 0.1390 -10.4043 -0.3735 20 7 -0.9127 -10.9672 -0.9272 21 14 1.6163 -11.4458 0.0979 22 1 2.6611 -10.5792 0.7001 23 1 1.2008 -12.4776 1.0818 24 1 2.1617 -12.1085 -1.1139 25 7 1.7016 -3.5680 -0.8138 26 6 2.7139 -3.6767 -1.8672 27 1 -0.3633 0.0041 1.0277 28 1 -0.3634 0.8879 -0.5173 29 1 -0.3633 -0.8921 -0.5101 30 1 1.6585 2.1294 0.0004 31 1 4.1183 2.1331 -0.0099 32 1 5.3613 0.0100 -0.0109 33 1 4.1494 -2.1301 -0.0025 34 1 -2.8513 -6.2906 0.1784 35 1 -2.2887 -5.9806 -1.4814 36 1 -1.8350 -4.8703 -0.1663 37 1 -1.9207 -8.5578 0.0190 38 1 -1.2158 -8.2863 -1.5926 39 1 -0.9212 -11.9232 -1.0911 40 1 2.3300 -3.2354 -2.7869 41 1 3.6163 -3.1483 -1.5597 42 1 2.9487 -4.7272 -2.0386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188250231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:20 Heat of formation + Delta-G solvation = 72.728319 kcal Electronic energy + Delta-G solvation = -23421.867762 eV Core-core repulsion = 20107.314306 eV Total energy + Delta-G solvation = -3314.553456 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.87169 -40.18135 -36.59527 -36.00615 -34.21433 -33.98975 -33.00375 -30.55886 -29.30587 -28.69222 -27.86714 -25.28751 -24.59638 -23.76799 -22.90010 -22.19701 -21.42796 -18.87557 -18.51928 -17.71890 -17.49254 -17.15985 -16.57521 -16.48905 -16.23311 -15.95941 -14.87190 -14.74987 -14.74484 -14.48935 -14.27265 -14.19278 -13.82223 -13.70338 -13.34828 -13.22679 -13.18311 -13.00807 -12.74959 -12.60606 -12.51202 -12.33760 -12.19236 -12.06771 -11.74665 -11.54762 -11.35961 -11.19254 -11.08151 -11.04291 -10.56039 -9.83672 -9.63203 -8.56054 -8.20844 -6.30050 -0.13525 0.15908 0.39096 0.72818 1.22257 1.40043 1.41594 1.54134 1.59598 1.68248 2.41231 2.73581 3.14275 3.16720 3.61498 3.83318 3.86041 4.06068 4.07359 4.12026 4.19619 4.20438 4.38117 4.43931 4.49360 4.53000 4.59873 4.71811 4.73971 4.79776 4.84065 4.89065 4.98632 5.00314 5.22138 5.25185 5.38398 5.39851 5.48162 5.50710 5.54451 5.70888 5.76512 5.98002 6.15777 6.81936 7.38301 7.49868 8.90920 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.003019 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.450818 B = 9272.332647 C =10024.253237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.058 4.058 3 C -0.120 4.120 4 C -0.095 4.095 5 C -0.121 4.121 6 C -0.102 4.102 7 C -0.044 4.044 8 C 0.221 3.779 9 N -0.304 5.304 10 N -0.324 5.324 11 C 0.155 3.845 12 S 0.023 5.977 13 C -0.050 4.050 14 H 0.075 0.925 15 C -0.136 4.136 16 C 0.046 3.954 17 C -0.534 4.534 18 H 0.062 0.938 19 C 0.008 3.992 20 N -0.928 5.928 21 Si 0.957 3.043 22 H -0.264 1.264 23 H -0.280 1.280 24 H -0.276 1.276 25 N -0.461 5.461 26 C 0.061 3.939 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.037 0.963 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.129 0.871 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.010 0.990 39 H 0.264 0.736 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.610 25.824 -3.036 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.113 4.113 5 C -0.139 4.139 6 C -0.122 4.122 7 C -0.047 4.047 8 C -0.047 4.047 9 N -0.144 5.144 10 N -0.169 5.169 11 C -0.220 4.220 12 S 0.252 5.748 13 C -0.179 4.179 14 H 0.094 0.906 15 C -0.195 4.195 16 C 0.007 3.993 17 C -0.572 4.572 18 H 0.080 0.920 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.782 3.218 22 H -0.188 1.188 23 H -0.206 1.206 24 H -0.202 1.202 25 N -0.154 5.154 26 C -0.080 4.080 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.170 0.830 31 H 0.177 0.823 32 H 0.174 0.826 33 H 0.147 0.853 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.135 0.865 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.101 25.183 -2.914 27.674 hybrid contribution 0.395 -0.893 0.369 1.044 sum 11.495 24.289 -2.545 26.992 Atomic orbital electron populations 1.20751 0.90908 1.02193 1.02683 1.20104 0.96477 0.92088 0.97322 1.21292 0.95036 0.97107 1.00386 1.21721 0.93869 0.99505 0.96211 1.21387 1.01540 0.91184 0.99739 1.21343 0.91509 1.00064 0.99279 1.17523 0.92890 0.86609 1.07649 1.23324 0.98012 0.90877 0.92450 1.74244 1.11094 1.07065 1.21985 1.74623 1.24164 1.04128 1.13992 1.27372 0.94255 0.99743 1.00583 1.85684 1.46788 0.97420 1.44873 1.23352 0.94758 0.99600 1.00223 0.90650 1.22016 0.95850 0.99569 1.02111 1.18886 0.96895 0.87284 0.96248 1.21581 1.02161 0.93102 1.40362 0.91953 1.25828 0.98860 0.99368 0.94984 1.70074 1.30765 1.11697 1.44297 0.85503 0.79576 0.78583 0.78097 1.18844 1.20590 1.20181 1.46632 1.27975 1.11045 1.29765 1.22562 0.90384 1.06139 0.88865 0.91008 0.89209 0.94380 0.82991 0.82302 0.82586 0.85311 0.91368 0.91928 0.91703 0.96244 0.97212 0.92673 0.88074 0.86523 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 9.18 71.24 0.65 -1.68 16 2 C -0.06 -1.19 5.91 -19.61 -0.12 -1.30 16 3 C -0.12 -1.64 9.69 22.23 0.22 -1.42 16 4 C -0.09 -0.98 10.04 22.33 0.22 -0.76 16 5 C -0.12 -1.41 10.03 22.23 0.22 -1.19 16 6 C -0.10 -1.77 8.72 22.53 0.20 -1.58 16 7 C -0.04 -1.03 5.68 -20.09 -0.11 -1.14 16 8 C 0.22 6.82 6.37 136.20 0.87 7.69 16 9 N -0.30 -11.46 11.12 -50.79 -0.56 -12.02 16 10 N -0.32 -13.21 9.72 -56.74 -0.55 -13.76 16 11 C 0.16 5.73 7.76 179.49 1.39 7.12 16 12 S 0.02 0.90 20.45 -56.49 -1.15 -0.25 16 13 C -0.05 -2.17 2.29 30.59 0.07 -2.10 16 14 H 0.08 3.49 8.14 -2.40 -0.02 3.47 16 15 C -0.14 -5.22 9.01 71.98 0.65 -4.57 16 16 C 0.05 2.35 4.44 29.85 0.13 2.48 16 17 C -0.53 -29.56 8.53 25.60 0.22 -29.34 16 18 H 0.06 3.41 7.60 -2.91 -0.02 3.38 16 19 C 0.01 0.45 5.46 84.66 0.46 0.91 16 20 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16 21 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 N -0.46 -13.73 3.24 -538.17 -1.74 -15.47 16 26 C 0.06 1.18 10.89 127.77 1.39 2.57 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 29 H 0.04 1.03 6.73 -2.39 -0.02 1.01 16 30 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 31 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 32 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.13 2.00 6.84 -2.91 -0.02 1.98 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.06 2.50 5.91 -2.39 -0.01 2.48 16 37 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.12 1.59 5.78 -2.39 -0.01 1.57 16 42 H 0.10 1.93 7.70 -2.39 -0.02 1.91 16 Total: -1.00 -71.57 360.78 5.78 -65.79 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.02 Total: 8.88 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 6.47 Total: -24.30 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -2.57 Total: -96.03 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -1.15 Total: -0.25 kcal Total: -71.57 5.78 -65.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188250231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.520 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds