Wall clock time and date at job start Tue Mar 31 2020 11:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37978 * 120.07559 * 2 1 4 4 C 1.38334 * 120.14486 * 180.23536 * 3 2 1 5 5 C 1.38376 * 120.29587 * 359.79015 * 4 3 2 6 6 C 1.37938 * 120.14244 * 359.94922 * 5 4 3 7 7 C 1.39554 * 120.07385 * 179.74787 * 2 1 3 8 8 C 1.47845 * 120.14264 * 0.02562 * 7 2 1 9 9 N 1.31261 * 126.46242 * 310.87756 * 8 7 2 10 10 N 1.28519 * 109.95740 * 180.02562 * 9 8 7 11 11 C 1.31443 * 110.07872 * 359.97438 * 10 9 8 12 12 S 1.76197 * 126.38363 * 179.97438 * 11 10 9 13 13 C 1.81007 * 99.99766 * 0.03025 * 12 11 10 14 14 H 1.08989 * 109.47156 * 54.99689 * 13 12 11 15 15 C 1.53005 * 109.46945 * 294.99666 * 13 12 11 16 16 C 1.53005 * 109.47180 * 175.00180 * 13 12 11 17 17 C 1.50700 * 109.46871 * 295.00044 * 16 13 12 18 18 H 1.08003 * 120.00103 * 359.97438 * 17 16 13 19 19 C 1.37871 * 119.99878 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00190 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99862 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47286 * 59.99327 * 21 19 17 23 23 H 1.48507 * 109.47197 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47019 * 299.99141 * 21 19 17 25 25 N 1.36563 * 107.23643 * 0.02562 * 11 10 9 26 26 C 1.46502 * 127.17299 * 180.02562 * 25 11 10 27 27 H 1.08995 * 109.47089 * 270.25410 * 1 2 3 28 28 H 1.08994 * 109.46973 * 30.25556 * 1 2 3 29 29 H 1.09000 * 109.46831 * 150.25236 * 1 2 3 30 30 H 1.08004 * 119.92595 * 359.97438 * 3 2 1 31 31 H 1.08008 * 119.85528 * 179.76084 * 4 3 2 32 32 H 1.07999 * 119.93287 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.07143 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46858 * 60.00032 * 15 13 12 35 35 H 1.08996 * 109.47073 * 180.02562 * 15 13 12 36 36 H 1.09003 * 109.47255 * 300.00159 * 15 13 12 37 37 H 1.09002 * 109.47162 * 54.99438 * 16 13 12 38 38 H 1.08999 * 109.46970 * 174.99600 * 16 13 12 39 39 H 0.97003 * 119.99851 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.46585 * 95.33593 * 26 25 11 41 41 H 1.08996 * 109.47126 * 215.33422 * 26 25 11 42 42 H 1.09001 * 109.47288 * 335.33772 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 -0.0049 5 6 4.2813 0.0018 -0.0055 6 6 3.6023 -1.1989 -0.0001 7 6 2.2063 -1.2077 0.0053 8 6 1.4720 -2.4908 0.0104 9 7 0.4846 -2.8213 0.8096 10 7 0.0803 -4.0108 0.5387 11 6 0.7851 -4.5125 -0.4510 12 16 0.5928 -6.1116 -1.1655 13 6 -0.7725 -6.7434 -0.1590 14 1 -1.6119 -6.0500 -0.2090 15 6 -0.3128 -6.8838 1.2936 16 6 -1.2078 -8.1105 -0.6905 17 6 -1.7749 -7.9528 -2.0778 18 1 -1.8207 -6.9751 -2.5345 19 6 -2.2363 -9.0563 -2.7635 20 7 -2.1810 -10.2467 -2.2072 21 14 -2.9399 -8.8606 -4.4829 22 1 -1.9038 -8.2883 -5.3796 23 1 -3.3623 -10.1876 -4.9989 24 1 -4.1126 -7.9507 -4.4372 25 7 1.6948 -3.5638 -0.8215 26 6 2.6981 -3.6667 -1.8840 27 1 -0.3633 0.0046 1.0276 28 1 -0.3633 0.8876 -0.5178 29 1 -0.3633 -0.8922 -0.5099 30 1 1.6585 2.1294 -0.0004 31 1 4.1183 2.1331 -0.0088 32 1 5.3613 0.0099 -0.0097 33 1 4.1494 -2.1301 -0.0001 34 1 -0.0027 -5.9099 1.6722 35 1 -1.1348 -7.2647 1.8996 36 1 0.5267 -7.5772 1.3436 37 1 -0.3470 -8.7784 -0.7237 38 1 -1.9685 -8.5307 -0.0325 39 1 -2.5053 -11.0231 -2.6898 40 1 2.3057 -3.2220 -2.7985 41 1 3.6025 -3.1384 -1.5822 42 1 2.9327 -4.7162 -2.0620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188250255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:22 Heat of formation + Delta-G solvation = 88.158422 kcal Electronic energy + Delta-G solvation = -23422.971981 eV Core-core repulsion = 20109.087624 eV Total energy + Delta-G solvation = -3313.884356 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.61246 -39.45250 -35.06405 -34.49262 -33.30977 -32.22192 -32.01626 -29.41569 -27.72391 -27.42288 -27.04511 -23.66917 -23.31802 -22.53524 -21.94392 -20.76947 -20.26708 -17.72020 -16.67686 -16.45429 -16.36361 -15.94958 -15.60902 -15.18190 -14.77647 -14.51560 -13.96616 -13.91844 -13.59272 -13.38629 -13.06885 -12.95184 -12.59981 -12.36724 -12.25389 -11.88753 -11.76561 -11.55687 -11.43881 -11.26814 -11.09779 -10.85049 -10.70578 -10.55545 -10.40815 -10.14114 -9.91317 -9.51595 -9.47869 -9.21005 -9.08268 -8.79341 -8.42421 -7.08773 -6.07299 -4.09994 0.72558 1.06748 1.56791 1.89443 2.66680 2.88515 2.94960 3.31541 3.35651 3.38818 3.46218 4.12031 4.41627 4.51420 4.56097 4.58469 4.71211 4.97080 5.01464 5.10786 5.25607 5.29927 5.36412 5.40272 5.52604 5.61080 5.67442 5.74050 5.76007 5.87335 6.02277 6.05203 6.14579 6.15407 6.17436 6.32177 6.56459 6.60421 6.62434 6.79800 6.81957 7.48256 7.52538 7.89479 8.25666 8.80526 8.94726 9.54515 11.03619 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022996 B = 0.002968 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.308799 B = 9431.494511 C = 9634.675070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.043 4.043 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.126 4.126 6 C -0.099 4.099 7 C -0.010 4.010 8 C 0.199 3.801 9 N -0.265 5.265 10 N -0.296 5.296 11 C 0.171 3.829 12 S 0.015 5.985 13 C -0.053 4.053 14 H 0.092 0.908 15 C -0.148 4.148 16 C 0.037 3.963 17 C -0.524 4.524 18 H 0.063 0.937 19 C 0.061 3.939 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.276 1.276 25 N -0.465 5.465 26 C 0.072 3.928 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.027 0.973 38 H 0.042 0.958 39 H 0.263 0.737 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.748 20.290 2.515 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.044 4.044 3 C -0.139 4.139 4 C -0.124 4.124 5 C -0.144 4.144 6 C -0.118 4.118 7 C -0.012 4.012 8 C -0.068 4.068 9 N -0.106 5.106 10 N -0.141 5.141 11 C -0.201 4.201 12 S 0.245 5.755 13 C -0.182 4.182 14 H 0.110 0.890 15 C -0.207 4.207 16 C -0.002 4.002 17 C -0.563 4.563 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 N -0.159 5.159 26 C -0.071 4.071 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.242 19.614 2.660 23.815 hybrid contribution -0.041 0.426 -1.024 1.110 sum 13.201 20.040 1.635 24.053 Atomic orbital electron populations 1.20826 0.90237 1.02617 1.03385 1.19992 0.96662 0.91460 0.96322 1.20991 0.94233 0.97290 1.01364 1.21263 0.94220 0.98198 0.98745 1.21004 1.00005 0.91972 1.01380 1.21190 0.92565 0.98628 0.99444 1.17348 0.91831 0.87767 1.04294 1.22707 0.99642 0.90352 0.94143 1.74316 1.08674 1.07170 1.20406 1.74736 1.22995 1.03208 1.13198 1.27714 0.92970 0.99863 0.99583 1.86006 1.45984 0.98512 1.44978 1.23663 0.95377 1.03948 0.95211 0.88993 1.22132 1.01370 1.02236 0.94963 1.19104 0.97134 0.87332 0.96589 1.21221 1.40964 0.94114 1.00004 0.91914 1.24980 0.95715 0.95215 0.98157 1.69941 1.46777 0.98590 1.37881 0.86643 0.79648 0.77201 0.84510 1.20088 1.21296 1.20130 1.46379 1.28601 1.12097 1.28860 1.22169 0.90528 1.05298 0.89077 0.90000 0.91653 0.91337 0.85393 0.85691 0.85539 0.85907 0.91704 0.91881 0.92672 0.95482 0.94036 0.92780 0.89822 0.89277 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.19 36.01 0.33 -0.95 16 2 C -0.04 -0.47 5.91 -104.23 -0.62 -1.09 16 3 C -0.12 -1.05 9.69 -39.64 -0.38 -1.43 16 4 C -0.11 -0.79 10.04 -39.50 -0.40 -1.19 16 5 C -0.13 -0.98 10.03 -39.64 -0.40 -1.38 16 6 C -0.10 -0.97 8.71 -39.18 -0.34 -1.31 16 7 C -0.01 -0.12 5.68 -104.97 -0.60 -0.72 16 8 C 0.20 3.06 6.36 -153.75 -0.98 2.08 16 9 N -0.26 -4.84 11.14 32.59 0.36 -4.48 16 10 N -0.30 -5.82 9.72 30.71 0.30 -5.52 16 11 C 0.17 3.10 7.76 -88.18 -0.68 2.42 16 12 S 0.02 0.29 20.44 -107.50 -2.20 -1.91 16 13 C -0.05 -1.11 2.29 -26.73 -0.06 -1.17 16 14 H 0.09 2.03 8.14 -51.92 -0.42 1.60 16 15 C -0.15 -2.75 9.01 37.16 0.33 -2.41 16 16 C 0.04 0.92 4.44 -27.88 -0.12 0.80 16 17 C -0.52 -14.21 8.53 -34.44 -0.29 -14.50 16 18 H 0.06 1.68 7.60 -52.48 -0.40 1.28 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 21 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 N -0.47 -6.99 3.24 -121.46 -0.39 -7.38 16 26 C 0.07 0.75 10.89 59.85 0.65 1.40 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.07 0.94 6.73 -51.93 -0.35 0.60 16 30 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 31 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.12 1.06 6.90 -52.48 -0.36 0.70 16 34 H 0.06 1.21 5.90 -51.93 -0.31 0.91 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.69 5.83 -51.93 -0.30 0.39 16 42 H 0.10 0.98 7.70 -51.93 -0.40 0.58 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -31.85 360.90 -10.33 -42.18 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.90 Total: -1.50 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -3.65 Total: -17.85 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 1.00 Total: -42.63 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.20 Total: -1.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.85 -10.33 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188250255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.339 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds