Wall clock time and date at job start Tue Mar 31 2020 11:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37978 * 120.07559 * 2 1 4 4 C 1.38334 * 120.14486 * 180.23536 * 3 2 1 5 5 C 1.38376 * 120.29587 * 359.79015 * 4 3 2 6 6 C 1.37938 * 120.14244 * 359.94922 * 5 4 3 7 7 C 1.39554 * 120.07385 * 179.74787 * 2 1 3 8 8 C 1.47845 * 120.14264 * 0.02562 * 7 2 1 9 9 N 1.31261 * 126.46242 * 310.87756 * 8 7 2 10 10 N 1.28519 * 109.95740 * 180.02562 * 9 8 7 11 11 C 1.31443 * 110.07872 * 359.97438 * 10 9 8 12 12 S 1.76197 * 126.38363 * 179.97438 * 11 10 9 13 13 C 1.81007 * 99.99766 * 0.03025 * 12 11 10 14 14 H 1.08989 * 109.47156 * 54.99689 * 13 12 11 15 15 C 1.53005 * 109.46945 * 294.99666 * 13 12 11 16 16 C 1.53005 * 109.47180 * 175.00180 * 13 12 11 17 17 C 1.50700 * 109.46871 * 295.00044 * 16 13 12 18 18 H 1.08003 * 120.00103 * 359.97438 * 17 16 13 19 19 C 1.37871 * 119.99878 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00190 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99862 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47286 * 59.99327 * 21 19 17 23 23 H 1.48507 * 109.47197 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47019 * 299.99141 * 21 19 17 25 25 N 1.36563 * 107.23643 * 0.02562 * 11 10 9 26 26 C 1.46502 * 127.17299 * 180.02562 * 25 11 10 27 27 H 1.08995 * 109.47089 * 270.25410 * 1 2 3 28 28 H 1.08994 * 109.46973 * 30.25556 * 1 2 3 29 29 H 1.09000 * 109.46831 * 150.25236 * 1 2 3 30 30 H 1.08004 * 119.92595 * 359.97438 * 3 2 1 31 31 H 1.08008 * 119.85528 * 179.76084 * 4 3 2 32 32 H 1.07999 * 119.93287 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.07143 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46858 * 60.00032 * 15 13 12 35 35 H 1.08996 * 109.47073 * 180.02562 * 15 13 12 36 36 H 1.09003 * 109.47255 * 300.00159 * 15 13 12 37 37 H 1.09002 * 109.47162 * 54.99438 * 16 13 12 38 38 H 1.08999 * 109.46970 * 174.99600 * 16 13 12 39 39 H 0.97003 * 119.99851 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.46585 * 95.33593 * 26 25 11 41 41 H 1.08996 * 109.47126 * 215.33422 * 26 25 11 42 42 H 1.09001 * 109.47288 * 335.33772 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 -0.0049 5 6 4.2813 0.0018 -0.0055 6 6 3.6023 -1.1989 -0.0001 7 6 2.2063 -1.2077 0.0053 8 6 1.4720 -2.4908 0.0104 9 7 0.4846 -2.8213 0.8096 10 7 0.0803 -4.0108 0.5387 11 6 0.7851 -4.5125 -0.4510 12 16 0.5928 -6.1116 -1.1655 13 6 -0.7725 -6.7434 -0.1590 14 1 -1.6119 -6.0500 -0.2090 15 6 -0.3128 -6.8838 1.2936 16 6 -1.2078 -8.1105 -0.6905 17 6 -1.7749 -7.9528 -2.0778 18 1 -1.8207 -6.9751 -2.5345 19 6 -2.2363 -9.0563 -2.7635 20 7 -2.1810 -10.2467 -2.2072 21 14 -2.9399 -8.8606 -4.4829 22 1 -1.9038 -8.2883 -5.3796 23 1 -3.3623 -10.1876 -4.9989 24 1 -4.1126 -7.9507 -4.4372 25 7 1.6948 -3.5638 -0.8215 26 6 2.6981 -3.6667 -1.8840 27 1 -0.3633 0.0046 1.0276 28 1 -0.3633 0.8876 -0.5178 29 1 -0.3633 -0.8922 -0.5099 30 1 1.6585 2.1294 -0.0004 31 1 4.1183 2.1331 -0.0088 32 1 5.3613 0.0099 -0.0097 33 1 4.1494 -2.1301 -0.0001 34 1 -0.0027 -5.9099 1.6722 35 1 -1.1348 -7.2647 1.8996 36 1 0.5267 -7.5772 1.3436 37 1 -0.3470 -8.7784 -0.7237 38 1 -1.9685 -8.5307 -0.0325 39 1 -2.5053 -11.0231 -2.6898 40 1 2.3057 -3.2220 -2.7985 41 1 3.6025 -3.1384 -1.5822 42 1 2.9327 -4.7162 -2.0620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188250255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:22 Heat of formation + Delta-G solvation = 72.806045 kcal Electronic energy + Delta-G solvation = -23423.637710 eV Core-core repulsion = 20109.087624 eV Total energy + Delta-G solvation = -3314.550085 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.87176 -40.18226 -36.59420 -36.00437 -34.21628 -33.98927 -33.00674 -30.55995 -29.30426 -28.69026 -27.87519 -25.28398 -24.59783 -23.76854 -22.89277 -22.20499 -21.42760 -18.87745 -18.51186 -17.65247 -17.56482 -17.12908 -16.59317 -16.50691 -16.25230 -15.92964 -14.89339 -14.76039 -14.70050 -14.49740 -14.29365 -14.17059 -13.82713 -13.69805 -13.35125 -13.23920 -13.17599 -13.00923 -12.73249 -12.62639 -12.50418 -12.35774 -12.18670 -12.05077 -11.75619 -11.58558 -11.35870 -11.21991 -11.11591 -10.97712 -10.54938 -9.83804 -9.63482 -8.56208 -8.20372 -6.29854 -0.12415 0.14467 0.39165 0.73365 1.22216 1.41401 1.43366 1.51141 1.58708 1.69005 2.41407 2.73746 3.14578 3.16565 3.61870 3.83415 3.85608 4.06036 4.07258 4.11776 4.19371 4.20413 4.37687 4.44135 4.49254 4.52999 4.59528 4.71002 4.72411 4.79410 4.84056 4.88976 4.98532 5.00107 5.21816 5.24220 5.38248 5.39849 5.48169 5.50708 5.54409 5.70931 5.76320 5.97999 6.15884 6.81596 7.38450 7.49925 8.90934 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022996 B = 0.002968 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.308799 B = 9431.494511 C = 9634.675070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.059 4.059 3 C -0.121 4.121 4 C -0.095 4.095 5 C -0.120 4.120 6 C -0.100 4.100 7 C -0.044 4.044 8 C 0.222 3.778 9 N -0.304 5.304 10 N -0.324 5.324 11 C 0.155 3.845 12 S 0.023 5.977 13 C -0.050 4.050 14 H 0.075 0.925 15 C -0.137 4.137 16 C 0.046 3.954 17 C -0.536 4.536 18 H 0.062 0.938 19 C 0.009 3.991 20 N -0.928 5.928 21 Si 0.956 3.044 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.271 1.271 25 N -0.461 5.461 26 C 0.062 3.938 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.010 0.990 38 H 0.019 0.981 39 H 0.265 0.735 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.159 23.258 1.414 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.113 4.113 5 C -0.138 4.138 6 C -0.120 4.120 7 C -0.047 4.047 8 C -0.046 4.046 9 N -0.144 5.144 10 N -0.169 5.169 11 C -0.219 4.219 12 S 0.252 5.748 13 C -0.179 4.179 14 H 0.094 0.906 15 C -0.196 4.196 16 C 0.008 3.992 17 C -0.574 4.574 18 H 0.080 0.920 19 C -0.189 4.189 20 N -0.568 5.568 21 Si 0.781 3.219 22 H -0.190 1.190 23 H -0.208 1.208 24 H -0.196 1.196 25 N -0.154 5.154 26 C -0.079 4.079 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.169 0.831 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.150 0.850 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.028 0.972 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.668 22.597 1.554 27.541 hybrid contribution -0.658 -0.280 -0.652 0.968 sum 15.009 22.317 0.901 26.910 Atomic orbital electron populations 1.20747 0.91114 1.02050 1.02661 1.20094 0.96345 0.92223 0.97447 1.21281 0.95102 0.97045 1.00445 1.21721 0.93789 0.99592 0.96205 1.21398 1.01580 0.91142 0.99663 1.21348 0.91370 1.00137 0.99149 1.17526 0.92976 0.86518 1.07653 1.23324 0.98060 0.91006 0.92253 1.74242 1.10812 1.06980 1.22382 1.74625 1.24058 1.04138 1.14104 1.27369 0.94363 0.99964 1.00249 1.85690 1.44692 0.99494 1.44892 1.23353 0.96158 1.01505 0.96894 0.90636 1.22023 1.01729 1.02384 0.93438 1.18875 0.95710 0.89041 0.95612 1.21524 1.40829 0.94114 1.00977 0.91968 1.25816 0.96086 0.94880 1.02159 1.70059 1.47853 0.99339 1.39542 0.85627 0.79113 0.77331 0.79814 1.19009 1.20808 1.19626 1.46633 1.28414 1.11145 1.29225 1.22556 0.90654 1.06238 0.88463 0.90945 0.89322 0.94638 0.83118 0.82301 0.82444 0.85049 0.91733 0.91385 0.91898 0.97214 0.96263 0.92657 0.88539 0.86278 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 9.19 71.24 0.65 -1.80 16 2 C -0.06 -1.24 5.91 -19.61 -0.12 -1.35 16 3 C -0.12 -1.69 9.69 22.23 0.22 -1.47 16 4 C -0.09 -0.98 10.04 22.33 0.22 -0.75 16 5 C -0.12 -1.35 10.03 22.23 0.22 -1.13 16 6 C -0.10 -1.68 8.71 22.53 0.20 -1.48 16 7 C -0.04 -1.03 5.68 -20.09 -0.11 -1.14 16 8 C 0.22 6.83 6.36 136.21 0.87 7.69 16 9 N -0.30 -11.48 11.14 -50.79 -0.57 -12.05 16 10 N -0.32 -13.23 9.72 -56.75 -0.55 -13.78 16 11 C 0.16 5.73 7.76 179.50 1.39 7.12 16 12 S 0.02 0.90 20.44 -56.49 -1.15 -0.26 16 13 C -0.05 -2.16 2.29 30.60 0.07 -2.09 16 14 H 0.08 3.50 8.14 -2.40 -0.02 3.48 16 15 C -0.14 -5.24 9.01 71.98 0.65 -4.59 16 16 C 0.05 2.39 4.44 29.85 0.13 2.52 16 17 C -0.54 -29.73 8.53 25.60 0.22 -29.51 16 18 H 0.06 3.39 7.60 -2.91 -0.02 3.37 16 19 C 0.01 0.52 5.46 84.65 0.46 0.98 16 20 N -0.93 -55.09 13.29 21.44 0.28 -54.80 16 21 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 N -0.46 -13.71 3.24 -538.18 -1.74 -15.46 16 26 C 0.06 1.19 10.89 127.77 1.39 2.58 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 29 H 0.03 1.01 6.73 -2.39 -0.02 1.00 16 30 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 32 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 33 H 0.13 1.89 6.90 -2.91 -0.02 1.87 16 34 H 0.06 2.50 5.90 -2.39 -0.01 2.48 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 40 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.12 1.54 5.83 -2.39 -0.01 1.53 16 42 H 0.10 1.89 7.70 -2.39 -0.02 1.87 16 Total: -1.00 -71.61 360.90 5.78 -65.83 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.02 Total: 9.05 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 6.46 Total: -24.43 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -2.57 Total: -96.09 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -1.15 Total: -0.26 kcal Total: -71.61 5.78 -65.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188250255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.632 kcal (2) G-P(sol) polarization free energy of solvation -71.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds