Wall clock time and date at job start Tue Mar 31 2020 11:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38353 * 119.85849 * 2 1 4 4 C 1.37958 * 120.14812 * 179.97438 * 3 2 1 5 5 C 1.39577 * 119.84980 * 0.02562 * 4 3 2 6 6 C 1.47839 * 120.14401 * 179.97438 * 5 4 3 7 7 N 1.31261 * 126.46616 * 197.94340 * 6 5 4 8 8 N 1.28514 * 109.96349 * 179.97438 * 7 6 5 9 9 C 1.31445 * 110.07573 * 359.97438 * 8 7 6 10 10 S 1.76205 * 126.38228 * 180.02562 * 9 8 7 11 11 C 1.81003 * 99.99615 * 0.02562 * 10 9 8 12 12 C 1.53001 * 109.46911 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47213 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46920 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00027 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99793 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99705 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00003 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47236 * 59.99797 * 18 16 14 20 20 H 1.48504 * 109.47436 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47411 * 299.99668 * 18 16 14 22 22 N 1.36559 * 107.23680 * 0.25988 * 9 8 7 23 23 C 1.46497 * 127.17311 * 179.69703 * 22 9 8 24 24 C 1.39578 * 119.71402 * 0.24644 * 5 4 3 25 25 C 1.37960 * 119.84615 * 359.49718 * 24 5 4 26 26 H 1.09005 * 109.47128 * 89.99368 * 1 2 3 27 27 H 1.08990 * 109.47780 * 210.00206 * 1 2 3 28 28 H 1.09007 * 109.46658 * 330.00167 * 1 2 3 29 29 H 1.08000 * 119.92930 * 359.95610 * 3 2 1 30 30 H 1.07995 * 120.07513 * 180.02562 * 4 3 2 31 31 H 1.08991 * 109.47357 * 60.00200 * 11 10 9 32 32 H 1.09005 * 109.47059 * 299.99436 * 11 10 9 33 33 H 1.09001 * 109.47307 * 300.00084 * 12 11 10 34 34 H 1.09001 * 109.47514 * 59.99485 * 12 11 10 35 35 H 1.08996 * 109.47121 * 299.99692 * 13 12 11 36 36 H 1.09004 * 109.46966 * 60.00273 * 13 12 11 37 37 H 0.97003 * 120.00029 * 180.02562 * 17 16 14 38 38 H 1.08992 * 109.47145 * 95.78657 * 23 22 9 39 39 H 1.09007 * 109.47511 * 215.78361 * 23 22 9 40 40 H 1.09001 * 109.47161 * 335.78302 * 23 22 9 41 41 H 1.08000 * 120.07521 * 179.74810 * 24 5 4 42 42 H 1.08000 * 119.92153 * 180.23170 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5754 1.2068 0.0005 5 6 4.2762 -0.0002 0.0005 6 6 5.7546 -0.0003 0.0005 7 7 6.5346 -1.0047 -0.3247 8 7 7.7669 -0.6573 -0.2127 9 6 7.8489 0.5911 0.1906 10 16 9.3299 1.4998 0.4831 11 6 10.5598 0.2365 0.0733 12 6 11.9647 0.8133 0.2592 13 6 13.0043 -0.2547 -0.0866 14 6 14.3881 0.3133 0.0972 15 1 14.5134 1.3340 0.4272 16 6 15.4940 -0.4699 -0.1570 17 7 15.3413 -1.7126 -0.5593 18 14 17.2092 0.2342 0.0701 19 1 17.3871 0.6589 1.4819 20 1 18.2183 -0.8023 -0.2654 21 1 17.3859 1.4057 -0.8251 22 7 6.5724 1.0509 0.3456 23 6 6.1599 2.3859 0.7858 24 6 3.5752 -1.2072 -0.0052 25 6 2.1956 -1.2000 -0.0004 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8898 0.5138 28 1 -0.3633 0.8901 0.5139 29 1 1.6523 2.1332 -0.0007 30 1 4.1118 2.1441 0.0010 31 1 10.4289 -0.0754 -0.9628 32 1 10.4305 -0.6232 0.7308 33 1 12.0943 1.6733 -0.3978 34 1 12.0953 1.1250 1.2955 35 1 12.8746 -1.1143 0.5708 36 1 12.8738 -0.5666 -1.1228 37 1 16.1193 -2.2638 -0.7377 38 1 5.9552 3.0085 -0.0850 39 1 5.2593 2.3056 1.3947 40 1 6.9580 2.8368 1.3755 41 1 4.1116 -2.1446 -0.0094 42 1 1.6520 -2.1332 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189771186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:12 Heat of formation + Delta-G solvation = 64.999263 kcal Electronic energy + Delta-G solvation = -22201.991913 eV Core-core repulsion = 18887.103300 eV Total energy + Delta-G solvation = -3314.888613 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.98001 -40.22522 -36.49703 -36.23006 -34.45403 -34.08552 -32.01855 -31.49813 -29.49205 -28.84966 -27.73945 -25.45415 -24.38726 -23.59350 -23.05366 -22.08486 -21.70605 -19.06519 -18.48747 -17.63902 -17.59248 -17.20812 -16.59563 -16.38689 -16.25483 -16.02278 -15.43762 -14.72859 -14.60930 -14.55963 -14.48272 -14.45960 -13.78841 -13.72897 -13.68995 -13.16104 -13.09172 -13.02337 -12.74489 -12.72773 -12.45117 -12.30906 -12.17374 -11.88167 -11.73868 -11.53984 -11.46855 -11.31310 -11.26924 -11.14832 -10.54943 -9.98963 -9.61083 -8.68391 -8.19086 -6.31164 -0.32091 -0.10167 0.37959 0.74522 0.92902 1.41948 1.45356 1.47603 1.53269 1.63275 2.42419 2.75295 3.06934 3.14316 3.49798 3.72836 3.93433 3.95141 3.96650 3.99513 4.02551 4.16067 4.29763 4.41070 4.44654 4.50459 4.57425 4.74018 4.76541 4.77702 4.81574 4.89326 4.96115 5.08496 5.12286 5.22591 5.31405 5.42584 5.49049 5.60276 5.61104 5.66301 5.82586 5.93761 6.20821 6.85152 7.37905 7.38229 8.92643 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.044218 B = 0.001971 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.078018 B =14200.050858 C =14775.365499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.070 4.070 3 C -0.117 4.117 4 C -0.105 4.105 5 C -0.047 4.047 6 C 0.226 3.774 7 N -0.316 5.316 8 N -0.331 5.331 9 C 0.151 3.849 10 S 0.039 5.961 11 C -0.091 4.091 12 C -0.081 4.081 13 C 0.029 3.971 14 C -0.544 4.544 15 H 0.067 0.933 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.265 1.265 22 N -0.459 5.459 23 C 0.053 3.947 24 C -0.087 4.087 25 C -0.123 4.123 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.160 0.840 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.070 0.930 35 H -0.006 1.006 36 H -0.006 1.006 37 H 0.263 0.737 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.539 11.762 3.700 35.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.050 4.050 6 C -0.041 4.041 7 N -0.157 5.157 8 N -0.176 5.176 9 C -0.224 4.224 10 S 0.268 5.732 11 C -0.240 4.240 12 C -0.121 4.121 13 C -0.010 4.010 14 C -0.582 4.582 15 H 0.085 0.915 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.211 1.211 21 H -0.190 1.190 22 N -0.152 5.152 23 C -0.087 4.087 24 C -0.107 4.107 25 C -0.141 4.141 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.178 0.822 30 H 0.166 0.834 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.012 0.988 36 H 0.012 0.988 37 H 0.072 0.928 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -32.841 11.398 3.588 34.948 hybrid contribution 0.900 -0.659 -0.178 1.129 sum -31.942 10.738 3.410 33.870 Atomic orbital electron populations 1.20918 0.88687 1.04224 1.03496 1.20519 0.97974 0.92710 0.95887 1.21310 0.92885 0.99217 1.00025 1.21642 0.95416 0.96568 0.98804 1.17599 0.83885 0.96171 1.07373 1.23465 0.94318 0.84365 1.01980 1.74172 0.96496 1.24667 1.20329 1.74670 1.12755 1.09621 1.20542 1.27192 0.92206 0.96483 1.06476 1.84980 0.87990 1.15877 1.84316 1.23604 0.95983 0.99204 1.05249 1.21245 0.89551 0.99137 1.02138 1.18975 0.93142 0.93768 0.95098 1.21642 0.92035 0.99090 1.45405 0.91484 1.26031 1.04130 0.95145 0.94721 1.70113 1.31581 1.08729 1.46978 0.85449 0.78068 0.78052 0.79168 1.18991 1.21100 1.18977 1.46560 1.03497 1.14571 1.50541 1.22841 1.04611 0.77913 1.03367 1.21252 0.95072 0.96806 0.97616 1.21253 0.92624 0.99504 1.00685 0.89942 0.90560 0.89817 0.82225 0.83373 0.90043 0.90073 0.91140 0.91157 0.98790 0.98785 0.92794 0.86999 0.86145 0.87474 0.86263 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.00 71.24 0.71 0.16 16 2 C -0.07 -0.74 5.89 -19.81 -0.12 -0.86 16 3 C -0.12 -1.14 9.68 22.23 0.22 -0.92 16 4 C -0.10 -1.42 8.75 22.53 0.20 -1.22 16 5 C -0.05 -1.01 5.87 -20.09 -0.12 -1.13 16 6 C 0.23 6.45 7.71 136.20 1.05 7.50 16 7 N -0.32 -11.69 12.00 -50.79 -0.61 -12.30 16 8 N -0.33 -13.02 11.59 -56.75 -0.66 -13.68 16 9 C 0.15 4.87 8.07 179.50 1.45 6.32 16 10 S 0.04 1.13 21.68 -56.49 -1.22 -0.10 16 11 C -0.09 -3.38 5.23 71.98 0.38 -3.00 16 12 C -0.08 -3.32 5.16 30.59 0.16 -3.16 16 13 C 0.03 1.57 4.97 29.85 0.15 1.72 16 14 C -0.54 -30.98 9.11 25.60 0.23 -30.75 16 15 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 16 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 17 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 18 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 N -0.46 -11.48 3.24 -538.18 -1.74 -13.22 16 23 C 0.05 0.65 9.31 127.77 1.19 1.84 16 24 C -0.09 -1.77 9.70 22.53 0.22 -1.56 16 25 C -0.12 -1.73 9.68 22.23 0.22 -1.51 16 26 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 27 H 0.08 0.29 8.08 -2.39 -0.02 0.27 16 28 H 0.08 0.18 8.08 -2.38 -0.02 0.16 16 29 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 30 H 0.15 1.28 4.93 -2.91 -0.01 1.27 16 31 H 0.08 3.20 8.14 -2.40 -0.02 3.18 16 32 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 37 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.11 0.87 7.77 -2.39 -0.02 0.85 16 39 H 0.12 0.92 6.52 -2.38 -0.02 0.90 16 40 H 0.11 1.18 7.69 -2.39 -0.02 1.16 16 41 H 0.12 2.74 7.96 -2.91 -0.02 2.72 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -77.50 367.44 5.48 -72.02 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.02 Total: 4.72 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 6.39 Total: -26.25 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -2.72 Total: -96.87 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -1.22 Total: -0.10 kcal Total: -77.50 5.48 -72.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189771186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.017 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds