Wall clock time and date at job start Tue Mar 31 2020 11:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37968 * 119.82428 * 2 1 4 4 C 1.39246 * 120.23972 * 179.97438 * 3 2 1 5 5 C 1.38921 * 118.87251 * 0.37715 * 4 3 2 6 6 C 1.37702 * 120.78931 * 359.47759 * 5 4 3 7 7 C 1.38241 * 119.81963 * 180.02562 * 2 1 3 8 8 C 1.50703 * 120.12126 * 359.81466 * 7 2 1 9 9 C 1.51646 * 107.03547 * 179.44351 * 5 4 3 10 10 H 1.09003 * 110.93488 * 102.80845 * 9 5 4 11 11 C 1.50707 * 110.94056 * 226.45308 * 9 5 4 12 12 O 1.21286 * 119.99572 * 356.99303 * 11 9 5 13 13 N 1.34772 * 120.00045 * 176.99378 * 11 9 5 14 14 C 1.47576 * 134.49309 * 180.02562 * 13 11 9 15 15 C 1.53941 * 86.11939 * 155.35462 * 14 13 11 16 16 O 1.42900 * 113.73930 * 269.14999 * 15 14 13 17 17 C 1.50700 * 113.74398 * 137.94964 * 15 14 13 18 18 H 1.07993 * 120.00244 * 245.35636 * 17 15 14 19 19 C 1.37884 * 119.99822 * 65.35663 * 17 15 14 20 20 N 1.31509 * 119.99745 * 355.46718 * 19 17 15 21 21 Si 1.86794 * 119.99970 * 175.19193 * 19 17 15 22 22 H 1.48502 * 109.47287 * 59.99546 * 21 19 17 23 23 H 1.48498 * 109.47522 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47158 * 299.99952 * 21 19 17 25 25 C 1.47583 * 134.49469 * 359.97438 * 13 11 9 26 26 C 1.54701 * 101.95892 * 344.63043 * 9 5 4 27 27 O 1.36127 * 129.89759 * 180.99823 * 4 3 2 28 28 H 1.08997 * 109.46929 * 269.98068 * 1 2 3 29 29 H 1.09000 * 109.46979 * 29.97906 * 1 2 3 30 30 H 1.08999 * 109.47161 * 149.97567 * 1 2 3 31 31 H 1.08000 * 119.88564 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.00992 * 180.35525 * 6 5 4 33 33 H 1.09001 * 109.46816 * 270.01974 * 8 7 2 34 34 H 1.09003 * 109.46890 * 30.01680 * 8 7 2 35 35 H 1.08994 * 109.47303 * 150.01811 * 8 7 2 36 36 H 1.08994 * 113.77246 * 41.04787 * 14 13 11 37 37 H 1.09006 * 113.86584 * 269.66929 * 14 13 11 38 38 H 0.96702 * 113.99829 * 173.06102 * 16 15 14 39 39 H 0.97002 * 120.00689 * 4.83021 * 20 19 17 40 40 H 1.08998 * 113.76788 * 90.33988 * 25 13 11 41 41 H 1.09001 * 113.76995 * 318.94994 * 25 13 11 42 42 H 1.09007 * 110.74831 * 143.59928 * 26 9 5 43 43 H 1.09005 * 110.75079 * 266.94616 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1933 1.1969 0.0000 4 6 3.5857 1.2070 0.0005 5 6 4.2653 -0.0046 -0.0069 6 6 3.5784 -1.1980 -0.0040 7 6 2.1945 -1.1994 -0.0005 8 6 1.4397 -2.5037 0.0031 9 6 5.7471 0.3173 -0.0185 10 1 6.1837 0.1778 0.9705 11 6 6.4710 -0.5143 -1.0459 12 8 5.8663 -1.3479 -1.6866 13 7 7.7902 -0.3318 -1.2528 14 6 8.7913 -0.9445 -2.1473 15 6 9.5748 0.3725 -2.0006 16 8 9.2536 1.3469 -2.9953 17 6 11.0591 0.1793 -1.8253 18 1 11.5350 0.4643 -0.8987 19 6 11.8094 -0.3615 -2.8479 20 7 11.2181 -0.7908 -3.9413 21 14 13.6665 -0.4772 -2.6834 22 1 14.0079 -1.3152 -1.5060 23 1 14.2349 -1.0912 -3.9102 24 1 14.2332 0.8836 -2.5034 25 6 8.8136 0.5618 -0.6764 26 6 5.7474 1.8121 -0.4172 27 8 4.4512 2.2575 0.0188 28 1 -0.3633 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6485 2.1295 0.0004 32 1 4.1196 -2.1327 -0.0041 33 1 1.2603 -2.8168 1.0317 34 1 0.4861 -2.3730 -0.5085 35 1 2.0266 -3.2646 -0.5112 36 1 8.4247 -1.1274 -3.1572 37 1 9.2984 -1.8077 -1.7161 38 1 9.6624 2.2105 -2.8464 39 1 10.2636 -0.6637 -4.0585 40 1 9.3262 0.1420 0.1891 41 1 8.4645 1.5813 -0.5123 42 1 6.5377 2.3510 0.1055 43 1 5.8510 1.9238 -1.4966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193969118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:46 Heat of formation + Delta-G solvation = -80.051927 kcal Electronic energy + Delta-G solvation = -26698.703347 eV Core-core repulsion = 22902.479221 eV Total energy + Delta-G solvation = -3796.224127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.59834 -41.15690 -39.28441 -39.10241 -35.95786 -34.52126 -34.34833 -33.02840 -32.32426 -29.97639 -28.01150 -27.46155 -27.22070 -26.64869 -24.45999 -23.37346 -22.18081 -21.51224 -20.14481 -19.58867 -18.39720 -18.16306 -17.84392 -17.26013 -16.76090 -16.54138 -16.49019 -15.71247 -15.50371 -15.32089 -15.17644 -14.98566 -14.71083 -14.66750 -14.50517 -13.90758 -13.79894 -13.63366 -13.57395 -13.31239 -13.12544 -13.09749 -12.92374 -12.81695 -12.57641 -12.20071 -12.17739 -11.92328 -11.80847 -11.62865 -11.21243 -11.07325 -10.60540 -10.26846 -9.77839 -9.70716 -9.04510 -8.59357 -6.48059 0.17297 0.31335 1.37216 1.60131 1.65307 1.70298 1.84781 2.09837 2.58196 2.61221 3.05753 3.14946 3.23483 3.36713 3.56065 3.76065 3.84987 3.88973 3.91939 4.16943 4.22005 4.25051 4.31671 4.35240 4.44955 4.46379 4.58145 4.64613 4.68336 4.72410 4.74765 4.81002 4.91552 4.98719 5.09474 5.13709 5.19736 5.27040 5.37120 5.58181 5.67027 5.76116 6.10432 6.12638 6.51567 6.67193 6.92905 7.15979 7.45391 8.76404 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.002999 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.646817 B = 9334.944979 C = 9853.205123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.051 4.051 3 C -0.144 4.144 4 C 0.084 3.916 5 C -0.178 4.178 6 C -0.059 4.059 7 C -0.126 4.126 8 C -0.108 4.108 9 C -0.086 4.086 10 H 0.140 0.860 11 C 0.534 3.466 12 O -0.584 6.584 13 N -0.631 5.631 14 C 0.123 3.877 15 C 0.204 3.796 16 O -0.577 6.577 17 C -0.636 4.636 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 1.114 2.886 22 H -0.269 1.269 23 H -0.295 1.295 24 H -0.266 1.266 25 C 0.090 3.910 26 C 0.072 3.928 27 O -0.306 6.306 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.380 0.620 39 H 0.266 0.734 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.148 0.852 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.268 4.373 12.568 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.051 4.051 3 C -0.163 4.163 4 C 0.040 3.960 5 C -0.179 4.179 6 C -0.077 4.077 7 C -0.126 4.126 8 C -0.164 4.164 9 C -0.107 4.107 10 H 0.157 0.843 11 C 0.324 3.676 12 O -0.464 6.464 13 N -0.364 5.364 14 C 0.000 4.000 15 C 0.164 3.836 16 O -0.385 6.385 17 C -0.674 4.674 18 H 0.090 0.910 19 C -0.214 4.214 20 N -0.558 5.558 21 Si 0.937 3.063 22 H -0.194 1.194 23 H -0.221 1.221 24 H -0.191 1.191 25 C -0.031 4.031 26 C -0.003 4.003 27 O -0.220 6.220 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.166 0.834 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.229 0.771 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.166 0.834 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.837 3.106 11.332 19.720 hybrid contribution -0.432 0.485 0.387 0.756 sum -16.269 3.592 11.719 20.370 Atomic orbital electron populations 1.20948 0.87689 1.04275 1.03934 1.19869 0.97979 0.90669 0.96624 1.20381 0.88958 0.99940 1.06995 1.19765 0.92325 0.85637 0.98312 1.20371 0.93237 0.94803 1.09491 1.20301 0.94128 0.96249 0.97010 1.20000 0.92362 0.96977 1.03242 1.20828 1.00164 0.92101 1.03320 1.21462 0.93105 0.96115 1.00035 0.84291 1.20357 0.80592 0.83265 0.83427 1.90644 1.66857 1.37965 1.50977 1.50227 1.05787 1.39906 1.40517 1.23296 0.85759 0.98563 0.92350 1.20258 0.92602 0.85851 0.84933 1.86345 1.74999 1.24697 1.52409 1.22488 0.92522 1.48490 1.03863 0.91006 1.27205 1.10438 0.91505 0.92229 1.70835 1.13634 1.42037 1.29264 0.82961 0.69602 0.77727 0.76054 1.19429 1.22128 1.19085 1.24142 0.85286 0.94831 0.98885 1.23872 0.84692 0.90848 1.00872 1.86803 1.20009 1.32674 1.82495 0.89132 0.90277 0.89659 0.83379 0.87114 0.89723 0.89162 0.92440 0.94586 0.90069 0.77100 0.92278 0.87718 0.87956 0.83418 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.59 71.24 0.68 -0.77 16 2 C -0.05 -1.12 5.87 -19.92 -0.12 -1.24 16 3 C -0.14 -3.55 9.71 22.45 0.22 -3.33 16 4 C 0.08 2.52 7.04 22.68 0.16 2.68 16 5 C -0.18 -5.73 5.41 -19.53 -0.11 -5.83 16 6 C -0.06 -1.83 8.72 22.18 0.19 -1.64 16 7 C -0.13 -3.12 5.89 -19.83 -0.12 -3.23 16 8 C -0.11 -1.93 9.61 71.24 0.68 -1.24 16 9 C -0.09 -2.65 3.30 -11.40 -0.04 -2.69 16 10 H 0.14 3.55 8.14 -2.39 -0.02 3.53 16 11 C 0.53 21.23 7.30 87.66 0.64 21.87 16 12 O -0.58 -27.85 15.83 -3.05 -0.05 -27.90 16 13 N -0.63 -25.19 3.60 -840.40 -3.02 -28.21 16 14 C 0.12 5.84 6.99 86.48 0.60 6.44 16 15 C 0.20 9.03 0.95 -10.89 -0.01 9.02 16 16 O -0.58 -26.04 12.99 -148.98 -1.94 -27.98 16 17 C -0.64 -30.60 8.58 25.60 0.22 -30.38 16 18 H 0.07 3.24 7.82 -2.91 -0.02 3.22 16 19 C -0.01 -0.58 5.41 84.66 0.46 -0.12 16 20 N -0.92 -53.35 13.48 21.45 0.29 -53.06 16 21 Si 1.11 45.46 29.91 68.60 2.05 47.51 16 22 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 23 H -0.30 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 25 C 0.09 3.07 7.79 86.47 0.67 3.74 16 26 C 0.07 1.95 6.85 72.56 0.50 2.45 16 27 O -0.31 -8.84 11.10 -95.00 -1.05 -9.90 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 30 H 0.08 0.92 5.94 -2.39 -0.01 0.90 16 31 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.11 3.67 7.74 -2.91 -0.02 3.65 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.21 5.94 -2.39 -0.01 1.20 16 35 H 0.06 1.13 8.09 -2.39 -0.02 1.11 16 36 H 0.04 1.91 7.63 -2.39 -0.02 1.90 16 37 H 0.08 3.92 8.09 -2.38 -0.02 3.90 16 38 H 0.38 14.11 9.09 -74.06 -0.67 13.44 16 39 H 0.27 15.93 5.68 -92.71 -0.53 15.40 16 40 H 0.10 3.25 8.09 -2.39 -0.02 3.23 16 41 H 0.10 2.75 6.92 -2.39 -0.02 2.73 16 42 H 0.15 2.90 7.42 -2.38 -0.02 2.88 16 43 H 0.07 2.02 7.91 -2.38 -0.02 2.00 16 Total: -1.00 -71.06 354.17 1.54 -69.52 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.62 Total: 34.29 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 4.64 Total: -4.27 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -2.74 Total: -81.28 kcal Atomic # 8 Polarization: -62.73 SS G_CDS: -3.04 Total: -65.77 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.05 Total: 47.51 kcal Total: -71.06 1.54 -69.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193969118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.535 kcal (2) G-P(sol) polarization free energy of solvation -71.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds