Wall clock time and date at job start Tue Mar 31 2020 11:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37983 * 119.82346 * 2 1 4 4 C 1.39243 * 120.23719 * 180.02562 * 3 2 1 5 5 C 1.38921 * 118.87966 * 0.28872 * 4 3 2 6 6 C 1.37701 * 120.78763 * 359.52142 * 5 4 3 7 7 C 1.38238 * 119.82587 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.11754 * 359.81168 * 7 2 1 9 9 C 1.51640 * 107.03798 * 179.48859 * 5 4 3 10 10 H 1.08999 * 110.93998 * 226.41731 * 9 5 4 11 11 C 1.50707 * 110.93807 * 102.76833 * 9 5 4 12 12 O 1.21285 * 119.99856 * 3.01601 * 11 9 5 13 13 N 1.34773 * 119.99903 * 183.00494 * 11 9 5 14 14 C 1.47583 * 134.49244 * 179.97438 * 13 11 9 15 15 C 1.53940 * 86.11617 * 155.36379 * 14 13 11 16 16 O 1.42895 * 113.74445 * 269.15214 * 15 14 13 17 17 C 1.50702 * 113.74025 * 137.95239 * 15 14 13 18 18 H 1.08002 * 120.00299 * 1.92917 * 17 15 14 19 19 C 1.37884 * 119.99942 * 181.64476 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.47815 * 134.45820 * 359.87626 * 13 11 9 26 26 C 1.54703 * 101.96170 * 344.59634 * 9 5 4 27 27 O 1.36137 * 129.89099 * 180.96899 * 4 3 2 28 28 H 1.08997 * 109.46980 * 270.01994 * 1 2 3 29 29 H 1.09003 * 109.46812 * 30.02269 * 1 2 3 30 30 H 1.08994 * 109.46636 * 150.02126 * 1 2 3 31 31 H 1.07995 * 119.87748 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.01186 * 180.35867 * 6 5 4 33 33 H 1.09008 * 109.47054 * 270.02200 * 8 7 2 34 34 H 1.09001 * 109.46847 * 30.02321 * 8 7 2 35 35 H 1.08995 * 109.47181 * 150.02265 * 8 7 2 36 36 H 1.09002 * 113.76762 * 41.06339 * 14 13 11 37 37 H 1.09002 * 113.87323 * 269.67799 * 14 13 11 38 38 H 0.96698 * 114.00515 * 178.07648 * 16 15 14 39 39 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 40 40 H 1.08996 * 113.77002 * 90.37316 * 25 13 11 41 41 H 1.08997 * 113.83175 * 318.91261 * 25 13 11 42 42 H 1.08997 * 110.75157 * 143.63749 * 26 9 5 43 43 H 1.08997 * 110.74481 * 266.98680 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1971 0.0000 4 6 3.5856 1.2071 -0.0005 5 6 4.2653 -0.0044 -0.0072 6 6 3.5785 -1.1979 -0.0033 7 6 2.1945 -1.1993 0.0005 8 6 1.4398 -2.5036 0.0054 9 6 5.7471 0.3175 -0.0191 10 1 6.2707 -0.2849 -0.7614 11 6 6.3507 0.1266 1.3486 12 8 5.6682 -0.2921 2.2596 13 7 7.6489 0.4210 1.5593 14 6 8.5464 0.3606 2.7293 15 6 9.6952 0.2485 1.7107 16 8 10.0261 -1.0973 1.3625 17 6 10.9028 1.0777 2.0644 18 1 10.9150 1.6512 2.9795 19 6 11.9947 1.0995 1.2226 20 7 11.9799 0.4012 0.1083 21 14 13.4946 2.1213 1.6649 22 1 14.4381 1.2964 2.4615 23 1 14.1656 2.5792 0.4218 24 1 13.0727 3.3004 2.4628 25 6 8.7455 0.9324 0.7102 26 6 5.7474 1.8118 -0.4198 27 8 4.4511 2.2578 0.0170 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8902 -0.5135 31 1 1.6484 2.1295 0.0004 32 1 4.1197 -2.1325 -0.0027 33 1 1.2604 -2.8158 1.0343 34 1 0.4862 -2.3735 -0.5064 35 1 2.0268 -3.2650 -0.5081 36 1 8.4123 -0.5320 3.3403 37 1 8.5681 1.2787 3.3165 38 1 10.7274 -1.1714 0.7009 39 1 12.7479 0.4168 -0.4841 40 1 8.8246 2.0194 0.7022 41 1 8.7700 0.4954 -0.2880 42 1 6.5380 2.3513 0.1017 43 1 5.8503 1.9220 -1.4992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193969135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:49 Heat of formation + Delta-G solvation = -55.987175 kcal Electronic energy + Delta-G solvation = -26653.613255 eV Core-core repulsion = 22858.432654 eV Total energy + Delta-G solvation = -3795.180601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36719 -39.33341 -38.14360 -37.21626 -34.00731 -33.20865 -32.27173 -32.01922 -31.15933 -28.51661 -26.99504 -26.35432 -25.44175 -25.33330 -23.15801 -22.22386 -20.59091 -19.95632 -18.50039 -17.50117 -16.99751 -16.82754 -16.17674 -15.96714 -15.30408 -15.09683 -14.68683 -14.53550 -14.28269 -14.18145 -13.99532 -13.76220 -13.20271 -12.90731 -12.84756 -12.56683 -12.40687 -12.37074 -12.14310 -12.06197 -11.96854 -11.61303 -11.45973 -11.36682 -11.13238 -11.10007 -10.84321 -10.61891 -10.55093 -10.34668 -9.66776 -9.27465 -8.81966 -8.69874 -8.47989 -7.94843 -7.87284 -6.44290 -4.54527 1.28450 1.42922 3.00861 3.12034 3.20246 3.22546 3.32994 3.37384 3.77609 4.15014 4.34044 4.57793 4.77256 4.79276 4.84712 4.88610 5.00714 5.14491 5.22005 5.30123 5.39380 5.44694 5.54550 5.57405 5.59513 5.65721 5.73004 5.76293 5.89419 5.92110 6.11487 6.14705 6.28786 6.31627 6.41894 6.46959 6.55392 6.58917 6.60991 6.69241 7.03474 7.23008 7.58179 7.76836 8.39674 8.49049 8.68065 9.16877 9.36940 10.62404 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029735 B = 0.003000 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.437518 B = 9330.506218 C = 9703.799200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.140 4.140 4 C 0.111 3.889 5 C -0.142 4.142 6 C -0.047 4.047 7 C -0.120 4.120 8 C -0.108 4.108 9 C -0.096 4.096 10 H 0.119 0.881 11 C 0.539 3.461 12 O -0.549 6.549 13 N -0.632 5.632 14 C 0.113 3.887 15 C 0.240 3.760 16 O -0.572 6.572 17 C -0.537 4.537 18 H 0.071 0.929 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.074 3.926 26 C 0.065 3.935 27 O -0.302 6.302 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.273 0.727 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.749 -0.031 -5.292 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.158 4.158 4 C 0.065 3.935 5 C -0.144 4.144 6 C -0.066 4.066 7 C -0.120 4.120 8 C -0.165 4.165 9 C -0.117 4.117 10 H 0.137 0.863 11 C 0.327 3.673 12 O -0.427 6.427 13 N -0.366 5.366 14 C -0.008 4.008 15 C 0.199 3.801 16 O -0.384 6.384 17 C -0.576 4.576 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.538 5.538 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.048 4.048 26 C -0.010 4.010 27 O -0.216 6.216 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.247 0.753 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.130 0.870 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.679 -0.244 -4.519 17.282 hybrid contribution 1.634 0.643 -0.367 1.794 sum -15.045 0.398 -4.886 15.823 Atomic orbital electron populations 1.20840 0.90835 1.02827 1.02515 1.19365 0.95786 0.91598 0.98724 1.19966 0.89633 0.98418 1.07827 1.19497 0.91387 0.86140 0.96437 1.20169 0.93102 0.94067 1.07024 1.20119 0.93009 0.96580 0.96848 1.19538 0.92984 0.94997 1.04485 1.20750 0.99676 0.93807 1.02256 1.21463 0.93957 0.98461 0.97863 0.86301 1.19614 0.80277 0.78421 0.89005 1.90658 1.60047 1.47241 1.44804 1.50223 1.07294 1.63225 1.15856 1.23459 0.85720 1.00998 0.90664 1.19824 0.90304 0.81611 0.88406 1.86065 1.61095 1.26054 1.65187 1.21505 0.99986 1.28206 1.07857 0.91035 1.25068 0.98796 0.94984 0.94174 1.69393 1.31645 1.41199 1.11566 0.86335 0.81864 0.80255 0.78105 1.20255 1.20920 1.19554 1.24407 0.83661 0.99422 0.97324 1.23839 0.84231 0.92122 1.00857 1.86842 1.19809 1.32564 1.82373 0.90963 0.91568 0.90952 0.85608 0.85875 0.91335 0.91360 0.91750 0.91131 0.89572 0.75346 0.91668 0.89859 0.91204 0.87007 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.59 36.01 0.35 -0.62 16 2 C -0.05 -0.67 5.87 -104.72 -0.61 -1.29 16 3 C -0.14 -1.93 9.71 -39.30 -0.38 -2.31 16 4 C 0.11 1.79 7.04 -38.96 -0.27 1.52 16 5 C -0.14 -2.35 4.93 -104.10 -0.51 -2.86 16 6 C -0.05 -0.71 9.70 -39.72 -0.39 -1.10 16 7 C -0.12 -1.54 5.89 -104.56 -0.62 -2.15 16 8 C -0.11 -1.03 9.61 36.01 0.35 -0.68 16 9 C -0.10 -1.59 3.29 -91.56 -0.30 -1.89 16 10 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 11 C 0.54 11.10 7.35 -10.98 -0.08 11.02 16 12 O -0.55 -13.12 16.87 5.55 0.09 -13.02 16 13 N -0.63 -13.06 3.50 -178.11 -0.62 -13.68 16 14 C 0.11 2.44 8.23 -2.97 -0.02 2.42 16 15 C 0.24 5.56 1.40 -90.84 -0.13 5.43 16 16 O -0.57 -14.27 13.48 -35.23 -0.48 -14.74 16 17 C -0.54 -13.08 8.61 -34.44 -0.30 -13.38 16 18 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 20 N -0.90 -21.96 11.19 55.43 0.62 -21.34 16 21 Si 0.91 19.02 29.54 -169.99 -5.02 14.00 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C 0.07 1.51 7.04 -2.83 -0.02 1.49 16 26 C 0.06 0.94 7.36 38.05 0.28 1.22 16 27 O -0.30 -4.99 11.11 -20.18 -0.22 -5.22 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.07 0.51 5.94 -51.93 -0.31 0.20 16 31 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.07 0.52 5.94 -51.93 -0.31 0.21 16 35 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.09 1.72 8.09 -51.93 -0.42 1.30 16 38 H 0.39 9.81 6.59 45.56 0.30 10.11 16 39 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 40 H 0.08 1.59 8.08 -51.93 -0.42 1.17 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.11 1.63 6.98 -51.93 -0.36 1.26 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -29.54 356.89 -8.30 -37.83 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.29 Total: 12.33 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.76 Total: -1.53 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.00 Total: -35.02 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.61 Total: -32.98 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.54 -8.30 -37.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193969135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.156 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds