Wall clock time and date at job start Tue Mar 31 2020 11:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37983 * 119.82346 * 2 1 4 4 C 1.39243 * 120.23719 * 180.02562 * 3 2 1 5 5 C 1.38921 * 118.87966 * 0.28872 * 4 3 2 6 6 C 1.37701 * 120.78763 * 359.52142 * 5 4 3 7 7 C 1.38238 * 119.82587 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.11754 * 359.81168 * 7 2 1 9 9 C 1.51640 * 107.03798 * 179.48859 * 5 4 3 10 10 H 1.08999 * 110.93998 * 226.41731 * 9 5 4 11 11 C 1.50707 * 110.93807 * 102.76833 * 9 5 4 12 12 O 1.21285 * 119.99856 * 3.01601 * 11 9 5 13 13 N 1.34773 * 119.99903 * 183.00494 * 11 9 5 14 14 C 1.47583 * 134.49244 * 179.97438 * 13 11 9 15 15 C 1.53940 * 86.11617 * 155.36379 * 14 13 11 16 16 O 1.42895 * 113.74445 * 269.15214 * 15 14 13 17 17 C 1.50702 * 113.74025 * 137.95239 * 15 14 13 18 18 H 1.08002 * 120.00299 * 1.92917 * 17 15 14 19 19 C 1.37884 * 119.99942 * 181.64476 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.47815 * 134.45820 * 359.87626 * 13 11 9 26 26 C 1.54703 * 101.96170 * 344.59634 * 9 5 4 27 27 O 1.36137 * 129.89099 * 180.96899 * 4 3 2 28 28 H 1.08997 * 109.46980 * 270.01994 * 1 2 3 29 29 H 1.09003 * 109.46812 * 30.02269 * 1 2 3 30 30 H 1.08994 * 109.46636 * 150.02126 * 1 2 3 31 31 H 1.07995 * 119.87748 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.01186 * 180.35867 * 6 5 4 33 33 H 1.09008 * 109.47054 * 270.02200 * 8 7 2 34 34 H 1.09001 * 109.46847 * 30.02321 * 8 7 2 35 35 H 1.08995 * 109.47181 * 150.02265 * 8 7 2 36 36 H 1.09002 * 113.76762 * 41.06339 * 14 13 11 37 37 H 1.09002 * 113.87323 * 269.67799 * 14 13 11 38 38 H 0.96698 * 114.00515 * 178.07648 * 16 15 14 39 39 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 40 40 H 1.08996 * 113.77002 * 90.37316 * 25 13 11 41 41 H 1.08997 * 113.83175 * 318.91261 * 25 13 11 42 42 H 1.08997 * 110.75157 * 143.63749 * 26 9 5 43 43 H 1.08997 * 110.74481 * 266.98680 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1971 0.0000 4 6 3.5856 1.2071 -0.0005 5 6 4.2653 -0.0044 -0.0072 6 6 3.5785 -1.1979 -0.0033 7 6 2.1945 -1.1993 0.0005 8 6 1.4398 -2.5036 0.0054 9 6 5.7471 0.3175 -0.0191 10 1 6.2707 -0.2849 -0.7614 11 6 6.3507 0.1266 1.3486 12 8 5.6682 -0.2921 2.2596 13 7 7.6489 0.4210 1.5593 14 6 8.5464 0.3606 2.7293 15 6 9.6952 0.2485 1.7107 16 8 10.0261 -1.0973 1.3625 17 6 10.9028 1.0777 2.0644 18 1 10.9150 1.6512 2.9795 19 6 11.9947 1.0995 1.2226 20 7 11.9799 0.4012 0.1083 21 14 13.4946 2.1213 1.6649 22 1 14.4381 1.2964 2.4615 23 1 14.1656 2.5792 0.4218 24 1 13.0727 3.3004 2.4628 25 6 8.7455 0.9324 0.7102 26 6 5.7474 1.8118 -0.4198 27 8 4.4511 2.2578 0.0170 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8902 -0.5135 31 1 1.6484 2.1295 0.0004 32 1 4.1197 -2.1325 -0.0027 33 1 1.2604 -2.8158 1.0343 34 1 0.4862 -2.3735 -0.5064 35 1 2.0268 -3.2650 -0.5081 36 1 8.4123 -0.5320 3.3403 37 1 8.5681 1.2787 3.3165 38 1 10.7274 -1.1714 0.7009 39 1 12.7479 0.4168 -0.4841 40 1 8.8246 2.0194 0.7022 41 1 8.7700 0.4954 -0.2880 42 1 6.5380 2.3513 0.1017 43 1 5.8503 1.9220 -1.4992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193969135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:49 Heat of formation + Delta-G solvation = -74.863547 kcal Electronic energy + Delta-G solvation = -26654.431796 eV Core-core repulsion = 22858.432654 eV Total energy + Delta-G solvation = -3795.999142 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.57462 -40.94668 -39.24286 -38.87372 -35.85090 -34.36072 -34.15576 -32.99484 -32.28513 -30.14625 -27.97962 -27.34381 -27.14931 -27.00256 -24.42876 -23.29040 -21.84900 -21.44462 -20.11165 -19.26934 -18.32965 -18.10269 -17.55965 -17.32113 -17.06147 -16.30669 -16.12567 -16.07037 -15.78893 -15.24840 -15.00668 -14.94923 -14.73237 -14.40972 -14.10071 -13.84201 -13.70561 -13.56139 -13.43584 -13.26281 -13.02343 -12.91048 -12.83885 -12.79096 -12.73141 -12.24378 -12.22304 -12.16935 -11.93534 -11.71513 -11.34624 -10.97874 -10.65320 -10.28344 -9.76270 -9.63568 -8.99505 -8.27458 -6.43952 0.20601 0.34878 1.45372 1.46497 1.50676 1.58700 1.83137 2.19239 2.40341 2.62590 2.95303 3.12116 3.41367 3.42503 3.73045 3.80314 3.95008 4.03535 4.13852 4.20241 4.27588 4.29901 4.41825 4.45756 4.46158 4.56365 4.69521 4.74976 4.76385 4.78328 4.86871 4.90450 4.95076 5.02329 5.13805 5.22031 5.22730 5.31374 5.38482 5.61927 5.70953 5.72030 5.91942 6.15037 6.61313 6.75039 7.03427 7.29464 7.43634 8.78489 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029735 B = 0.003000 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.437518 B = 9330.506218 C = 9703.799200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.147 4.147 4 C 0.085 3.915 5 C -0.169 4.169 6 C -0.068 4.068 7 C -0.122 4.122 8 C -0.107 4.107 9 C -0.093 4.093 10 H 0.133 0.867 11 C 0.533 3.467 12 O -0.588 6.588 13 N -0.631 5.631 14 C 0.110 3.890 15 C 0.222 3.778 16 O -0.586 6.586 17 C -0.556 4.556 18 H 0.070 0.930 19 C 0.036 3.964 20 N -0.913 5.913 21 Si 0.966 3.034 22 H -0.281 1.281 23 H -0.280 1.280 24 H -0.268 1.268 25 C 0.092 3.908 26 C 0.068 3.932 27 O -0.318 6.318 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.388 0.612 39 H 0.276 0.724 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.182 0.584 -6.295 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.166 4.166 4 C 0.041 3.959 5 C -0.170 4.170 6 C -0.086 4.086 7 C -0.122 4.122 8 C -0.164 4.164 9 C -0.114 4.114 10 H 0.151 0.849 11 C 0.323 3.677 12 O -0.470 6.470 13 N -0.364 5.364 14 C -0.012 4.012 15 C 0.181 3.819 16 O -0.398 6.398 17 C -0.594 4.594 18 H 0.088 0.912 19 C -0.165 4.165 20 N -0.553 5.553 21 Si 0.792 3.208 22 H -0.207 1.207 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.030 4.030 26 C -0.007 4.007 27 O -0.233 6.233 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.162 0.838 32 H 0.140 0.860 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.243 0.757 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.128 0.872 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.115 0.375 -5.535 18.945 hybrid contribution 2.023 0.383 -0.016 2.059 sum -16.092 0.758 -5.551 17.039 Atomic orbital electron populations 1.20940 0.87746 1.04557 1.03562 1.19867 0.97943 0.90744 0.96744 1.20374 0.88972 0.99972 1.07234 1.19819 0.92333 0.85863 0.97926 1.20310 0.92947 0.94900 1.08826 1.20371 0.94327 0.96215 0.97696 1.19986 0.92390 0.96901 1.02968 1.20832 1.00477 0.92106 1.02941 1.21469 0.94293 1.00308 0.95293 0.84905 1.20382 0.79762 0.77188 0.90342 1.90621 1.60865 1.48960 1.46554 1.50244 1.07576 1.63140 1.15484 1.23476 0.85767 1.01111 0.90863 1.20076 0.90825 0.81006 0.90034 1.86054 1.61019 1.27515 1.65220 1.21697 1.00934 1.28684 1.08115 0.91173 1.25694 1.00863 0.95855 0.94103 1.69447 1.32268 1.41644 1.11972 0.85426 0.78779 0.78862 0.77781 1.20664 1.20492 1.19206 1.24235 0.82137 0.99910 0.96755 1.23975 0.83669 0.90373 1.02700 1.86792 1.20444 1.33082 1.82971 0.90036 0.90106 0.89054 0.83819 0.85981 0.90930 0.88846 0.91194 0.92535 0.88077 0.75744 0.91415 0.88443 0.90661 0.87250 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.59 71.24 0.68 -0.83 16 2 C -0.05 -1.19 5.87 -19.92 -0.12 -1.31 16 3 C -0.15 -3.88 9.71 22.45 0.22 -3.66 16 4 C 0.09 2.75 7.04 22.68 0.16 2.90 16 5 C -0.17 -5.59 4.93 -19.53 -0.10 -5.69 16 6 C -0.07 -2.04 9.70 22.18 0.22 -1.82 16 7 C -0.12 -2.97 5.89 -19.83 -0.12 -3.08 16 8 C -0.11 -1.78 9.61 71.24 0.68 -1.09 16 9 C -0.09 -3.07 3.29 -11.40 -0.04 -3.11 16 10 H 0.13 3.90 8.14 -2.39 -0.02 3.88 16 11 C 0.53 22.32 7.35 87.66 0.64 22.97 16 12 O -0.59 -28.95 16.87 -3.04 -0.05 -29.00 16 13 N -0.63 -26.30 3.50 -839.63 -2.94 -29.23 16 14 C 0.11 4.82 8.23 86.48 0.71 5.53 16 15 C 0.22 10.33 1.40 -10.88 -0.02 10.32 16 16 O -0.59 -29.72 13.48 -148.98 -2.01 -31.73 16 17 C -0.56 -26.99 8.61 25.60 0.22 -26.77 16 18 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 19 C 0.04 1.71 5.39 84.66 0.46 2.17 16 20 N -0.91 -44.26 11.19 21.45 0.24 -44.02 16 21 Si 0.97 38.44 29.54 68.60 2.03 40.46 16 22 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 25 C 0.09 3.68 7.04 86.45 0.61 4.28 16 26 C 0.07 1.92 7.36 72.56 0.53 2.45 16 27 O -0.32 -10.43 11.11 -95.11 -1.06 -11.48 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 30 H 0.09 0.90 5.94 -2.39 -0.01 0.89 16 31 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.09 1.06 5.94 -2.39 -0.01 1.05 16 35 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 36 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.10 4.06 8.09 -2.39 -0.02 4.04 16 38 H 0.39 19.76 6.59 -74.06 -0.49 19.28 16 39 H 0.28 12.70 8.31 -92.70 -0.77 11.93 16 40 H 0.10 3.63 8.08 -2.39 -0.02 3.61 16 41 H 0.07 2.92 8.14 -2.39 -0.02 2.91 16 42 H 0.11 3.10 6.98 -2.39 -0.02 3.08 16 43 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -63.93 356.89 1.52 -62.41 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: 0.55 Total: 39.34 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 4.75 Total: 3.26 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -2.70 Total: -73.25 kcal Atomic # 8 Polarization: -69.10 SS G_CDS: -3.12 Total: -72.21 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.46 kcal Total: -63.93 1.52 -62.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193969135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.458 kcal (2) G-P(sol) polarization free energy of solvation -63.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds