Wall clock time and date at job start Tue Mar 31 2020 10:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99782 * 2 1 4 4 H 1.48495 * 109.47290 * 270.00240 * 3 2 1 5 5 H 1.48501 * 109.47156 * 30.00358 * 3 2 1 6 6 H 1.48505 * 109.47334 * 150.00225 * 3 2 1 7 7 C 1.39935 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99740 * 197.03611 * 7 2 1 9 9 C 1.41433 * 120.00136 * 17.04022 * 7 2 1 10 10 C 1.40785 * 120.17974 * 205.07148 * 9 7 2 11 11 C 1.37703 * 120.04298 * 179.97438 * 10 9 7 12 12 C 1.38376 * 120.41321 * 0.02562 * 11 10 9 13 13 C 1.39880 * 120.35386 * 359.97438 * 12 11 10 14 14 C 1.47891 * 120.02358 * 180.02562 * 13 12 11 15 15 O 1.21546 * 120.00043 * 147.64531 * 14 13 12 16 16 N 1.34772 * 120.00062 * 327.65229 * 14 13 12 17 17 C 1.47395 * 121.02357 * 355.17439 * 16 14 13 18 18 C 1.53307 * 108.21200 * 229.10067 * 17 16 14 19 19 O 1.42965 * 109.43990 * 307.01090 * 18 17 16 20 20 C 1.43153 * 114.09931 * 63.12850 * 19 18 17 21 21 C 1.46211 * 121.00356 * 175.20013 * 16 14 13 22 22 C 1.54416 * 110.50866 * 9.19998 * 21 16 14 23 23 C 1.55088 * 100.86594 * 274.57510 * 22 21 16 24 24 O 1.43736 * 105.23297 * 324.40211 * 23 22 21 25 25 C 1.43461 * 109.92914 * 24.27490 * 24 23 22 26 26 C 1.39028 * 119.95318 * 0.27868 * 13 12 11 27 27 H 0.96996 * 120.00314 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.97534 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.79975 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.82470 * 179.97438 * 12 11 10 31 31 H 1.08995 * 109.71451 * 109.41731 * 17 16 14 32 32 H 1.09001 * 109.71311 * 348.78121 * 17 16 14 33 33 H 1.09000 * 109.47658 * 187.01913 * 18 17 16 34 34 H 1.09004 * 109.48027 * 67.00234 * 18 17 16 35 35 H 1.08999 * 109.51186 * 59.03764 * 20 19 18 36 36 H 1.09003 * 109.50530 * 179.12926 * 20 19 18 37 37 H 1.09005 * 111.13971 * 32.48323 * 22 21 16 38 38 H 1.09004 * 111.13665 * 156.67711 * 22 21 16 39 39 H 1.09004 * 110.29467 * 205.46051 * 23 22 21 40 40 H 1.09006 * 110.37352 * 83.38365 * 23 22 21 41 41 H 1.08996 * 109.87003 * 238.24615 * 25 24 23 42 42 H 1.09004 * 109.98203 * 117.18749 * 25 24 23 43 43 H 1.08001 * 120.20602 * 179.70611 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0525 -1.2324 0.2735 9 6 1.3475 -2.4097 -0.3600 10 6 1.8198 -3.6482 0.1144 11 6 1.1742 -4.8127 -0.2369 12 6 0.0600 -4.7760 -1.0567 13 6 -0.4237 -3.5549 -1.5377 14 6 -1.6155 -3.5241 -2.4130 15 8 -2.3778 -2.5785 -2.3687 16 7 -1.8563 -4.5447 -3.2596 17 6 -0.8941 -5.6513 -3.4085 18 6 -0.6469 -5.8732 -4.9051 19 8 -1.8989 -6.0430 -5.5742 20 6 -2.7540 -4.8965 -5.5141 21 6 -3.0798 -4.5875 -4.0588 22 6 -3.8463 -3.2517 -3.9468 23 6 -4.6685 -3.4939 -2.6543 24 8 -5.0155 -4.8884 -2.6832 25 6 -4.0724 -5.6105 -3.4878 26 6 0.2196 -2.3705 -1.1967 27 1 -0.4850 0.8400 0.0004 28 1 2.6891 -3.6849 0.7544 29 1 1.5402 -5.7606 0.1290 30 1 -0.4387 -5.6951 -1.3266 31 1 -1.3053 -6.5582 -2.9653 32 1 0.0429 -5.3927 -2.9154 33 1 -0.0365 -6.7655 -5.0443 34 1 -0.1275 -5.0092 -5.3198 35 1 -2.2487 -4.0415 -5.9633 36 1 -3.6762 -5.1013 -6.0580 37 1 -3.1599 -2.4137 -3.8249 38 1 -4.4999 -3.1003 -4.8058 39 1 -5.5692 -2.8800 -2.6586 40 1 -4.0652 -3.2727 -1.7737 41 1 -4.5910 -6.1174 -4.3014 42 1 -3.5417 -6.3396 -2.8755 43 1 -0.1476 -1.4258 -1.5697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194423417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:21 Heat of formation + Delta-G solvation = -57.336686 kcal Electronic energy + Delta-G solvation = -27995.155665 eV Core-core repulsion = 24199.916545 eV Total energy + Delta-G solvation = -3795.239120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25791 -38.44531 -38.05871 -36.97917 -34.67764 -33.78452 -32.65201 -30.13954 -29.74534 -29.29747 -28.30420 -25.88145 -25.49105 -23.45016 -23.07307 -22.00372 -20.94174 -20.36645 -18.87503 -17.63311 -16.89689 -16.24962 -16.17820 -16.03467 -15.48945 -15.26812 -15.11569 -14.78959 -14.64305 -14.36753 -14.00597 -13.73490 -13.27500 -13.12596 -12.67272 -12.64090 -12.55250 -12.13542 -11.76740 -11.66951 -11.47401 -11.33255 -11.23837 -11.18581 -10.95153 -10.77742 -10.52377 -10.43624 -10.08165 -9.97402 -9.76038 -9.32134 -9.23380 -8.52071 -8.36951 -7.69122 -7.58743 -6.86992 -4.50110 2.12727 2.71216 3.02128 3.04914 3.05315 3.07133 3.54630 3.66743 3.84937 4.07133 4.43335 4.48744 4.65514 4.80354 4.97166 5.09917 5.20616 5.33865 5.39007 5.42855 5.44665 5.48068 5.66193 5.67453 5.71658 5.81199 5.91302 6.02933 6.04979 6.22471 6.27062 6.48168 6.60927 6.81131 6.89624 6.93651 6.95382 7.11716 7.19668 7.29268 7.53358 7.66680 7.74986 7.87998 8.06948 8.40771 8.69028 8.72274 8.75503 10.07001 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.004409 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.079821 B = 6348.423148 C = 7024.797760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.102 3.898 10 C -0.211 4.211 11 C -0.095 4.095 12 C -0.230 4.230 13 C -0.124 4.124 14 C 0.569 3.431 15 O -0.525 6.525 16 N -0.603 5.603 17 C 0.059 3.941 18 C 0.044 3.956 19 O -0.381 6.381 20 C 0.069 3.931 21 C 0.106 3.894 22 C -0.165 4.165 23 C 0.054 3.946 24 O -0.391 6.391 25 C 0.054 3.946 26 C -0.097 4.097 27 H 0.285 0.715 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.142 0.858 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 -7.472 -9.239 12.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.231 4.231 11 C -0.114 4.114 12 C -0.250 4.250 13 C -0.127 4.127 14 C 0.363 3.637 15 O -0.404 6.404 16 N -0.337 5.337 17 C -0.064 4.064 18 C -0.033 4.033 19 O -0.299 6.299 20 C -0.009 4.009 21 C 0.020 3.980 22 C -0.201 4.201 23 C -0.021 4.021 24 O -0.311 6.311 25 C -0.024 4.024 26 C -0.117 4.117 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.159 0.841 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.842 -7.048 -9.172 12.189 hybrid contribution 0.525 0.890 0.152 1.044 sum -3.317 -6.158 -9.020 11.414 Atomic orbital electron populations 1.69796 1.07489 1.29817 1.33381 1.25972 0.94793 1.01540 0.92345 0.86272 0.80433 0.80436 0.79420 1.19189 1.20165 1.18526 1.19612 0.97969 0.90945 1.40301 0.90042 1.17580 0.91145 0.92468 0.88906 1.21119 1.03481 0.92804 1.05674 1.20466 0.96068 0.96792 0.98052 1.20624 1.01204 0.95139 1.08013 1.19408 0.96143 0.95445 1.01706 1.18970 0.85721 0.80407 0.78613 1.90523 1.47862 1.34563 1.67433 1.47728 1.19794 1.23808 1.42414 1.23134 0.96142 0.89975 0.97105 1.23097 0.85782 1.02720 0.91720 1.87971 1.28671 1.37544 1.75703 1.22733 0.95294 0.89396 0.93484 1.22029 0.86205 0.97512 0.92286 1.24007 0.99744 0.98807 0.97576 1.23760 0.98502 0.80884 0.98951 1.88403 1.50897 1.20415 1.71375 1.23326 0.89976 0.94328 0.94786 1.21512 0.96900 0.95701 0.97575 0.90378 0.88587 0.88797 0.88123 0.91016 0.85253 0.87608 0.92429 0.92108 0.87694 0.84113 0.91734 0.90669 0.89695 0.90681 0.91356 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.01 10.96 55.55 0.61 -19.40 16 2 C 0.07 1.78 5.15 -17.34 -0.09 1.69 16 3 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.60 9.05 -37.73 -0.34 -11.95 16 8 H 0.08 1.96 7.90 -52.48 -0.41 1.55 16 9 C 0.10 2.56 5.56 -106.87 -0.59 1.97 16 10 C -0.21 -4.78 9.78 -38.81 -0.38 -5.16 16 11 C -0.10 -1.93 10.01 -39.73 -0.40 -2.33 16 12 C -0.23 -4.59 7.41 -38.92 -0.29 -4.88 16 13 C -0.12 -2.75 5.38 -105.04 -0.57 -3.31 16 14 C 0.57 11.60 7.00 -12.31 -0.09 11.52 16 15 O -0.52 -11.59 10.24 5.33 0.05 -11.54 16 16 N -0.60 -9.88 2.70 -158.49 -0.43 -10.31 16 17 C 0.06 0.80 4.65 -3.39 -0.02 0.79 16 18 C 0.04 0.51 6.95 37.32 0.26 0.77 16 19 O -0.38 -4.78 10.73 -35.23 -0.38 -5.16 16 20 C 0.07 0.83 5.60 36.80 0.21 1.04 16 21 C 0.11 1.55 0.82 -131.31 -0.11 1.44 16 22 C -0.16 -2.52 5.56 -24.88 -0.14 -2.66 16 23 C 0.05 0.92 7.13 38.26 0.27 1.20 16 24 O -0.39 -6.72 11.37 -35.23 -0.40 -7.13 16 25 C 0.05 0.79 7.07 37.44 0.26 1.05 16 26 C -0.10 -2.43 8.24 -38.44 -0.32 -2.74 16 27 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 28 H 0.10 2.04 8.06 -52.48 -0.42 1.61 16 29 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.10 1.74 5.59 -52.49 -0.29 1.45 16 31 H 0.07 0.91 7.40 -51.93 -0.38 0.53 16 32 H 0.13 1.90 4.59 -51.93 -0.24 1.66 16 33 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 1.04 7.88 -51.93 -0.41 0.63 16 37 H 0.14 2.52 5.21 -55.07 -0.29 2.23 16 38 H 0.06 0.82 8.02 -51.93 -0.42 0.41 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.71 5.80 -51.93 -0.30 1.41 16 41 H 0.08 0.94 7.63 -51.93 -0.40 0.54 16 42 H 0.07 1.03 7.36 -51.93 -0.38 0.65 16 43 H 0.13 3.48 6.09 -52.49 -0.32 3.16 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -27.99 332.73 -8.39 -36.38 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -5.51 Total: 10.61 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.32 Total: -11.57 kcal Atomic # 7 Polarization: -29.89 SS G_CDS: 0.18 Total: -29.71 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.72 Total: -23.82 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.99 -8.39 -36.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194423417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.957 kcal (2) G-P(sol) polarization free energy of solvation -27.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds