Wall clock time and date at job start Tue Mar 31 2020 10:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99782 * 2 1 4 4 H 1.48495 * 109.47290 * 270.00240 * 3 2 1 5 5 H 1.48501 * 109.47156 * 30.00358 * 3 2 1 6 6 H 1.48505 * 109.47334 * 150.00225 * 3 2 1 7 7 C 1.39935 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99740 * 197.03611 * 7 2 1 9 9 C 1.41433 * 120.00136 * 17.04022 * 7 2 1 10 10 C 1.40785 * 120.17974 * 205.07148 * 9 7 2 11 11 C 1.37703 * 120.04298 * 179.97438 * 10 9 7 12 12 C 1.38376 * 120.41321 * 0.02562 * 11 10 9 13 13 C 1.39880 * 120.35386 * 359.97438 * 12 11 10 14 14 C 1.47891 * 120.02358 * 180.02562 * 13 12 11 15 15 O 1.21546 * 120.00043 * 147.64531 * 14 13 12 16 16 N 1.34772 * 120.00062 * 327.65229 * 14 13 12 17 17 C 1.47395 * 121.02357 * 355.17439 * 16 14 13 18 18 C 1.53307 * 108.21200 * 229.10067 * 17 16 14 19 19 O 1.42965 * 109.43990 * 307.01090 * 18 17 16 20 20 C 1.43153 * 114.09931 * 63.12850 * 19 18 17 21 21 C 1.46211 * 121.00356 * 175.20013 * 16 14 13 22 22 C 1.54416 * 110.50866 * 9.19998 * 21 16 14 23 23 C 1.55088 * 100.86594 * 274.57510 * 22 21 16 24 24 O 1.43736 * 105.23297 * 324.40211 * 23 22 21 25 25 C 1.43461 * 109.92914 * 24.27490 * 24 23 22 26 26 C 1.39028 * 119.95318 * 0.27868 * 13 12 11 27 27 H 0.96996 * 120.00314 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.97534 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.79975 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.82470 * 179.97438 * 12 11 10 31 31 H 1.08995 * 109.71451 * 109.41731 * 17 16 14 32 32 H 1.09001 * 109.71311 * 348.78121 * 17 16 14 33 33 H 1.09000 * 109.47658 * 187.01913 * 18 17 16 34 34 H 1.09004 * 109.48027 * 67.00234 * 18 17 16 35 35 H 1.08999 * 109.51186 * 59.03764 * 20 19 18 36 36 H 1.09003 * 109.50530 * 179.12926 * 20 19 18 37 37 H 1.09005 * 111.13971 * 32.48323 * 22 21 16 38 38 H 1.09004 * 111.13665 * 156.67711 * 22 21 16 39 39 H 1.09004 * 110.29467 * 205.46051 * 23 22 21 40 40 H 1.09006 * 110.37352 * 83.38365 * 23 22 21 41 41 H 1.08996 * 109.87003 * 238.24615 * 25 24 23 42 42 H 1.09004 * 109.98203 * 117.18749 * 25 24 23 43 43 H 1.08001 * 120.20602 * 179.70611 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0525 -1.2324 0.2735 9 6 1.3475 -2.4097 -0.3600 10 6 1.8198 -3.6482 0.1144 11 6 1.1742 -4.8127 -0.2369 12 6 0.0600 -4.7760 -1.0567 13 6 -0.4237 -3.5549 -1.5377 14 6 -1.6155 -3.5241 -2.4130 15 8 -2.3778 -2.5785 -2.3687 16 7 -1.8563 -4.5447 -3.2596 17 6 -0.8941 -5.6513 -3.4085 18 6 -0.6469 -5.8732 -4.9051 19 8 -1.8989 -6.0430 -5.5742 20 6 -2.7540 -4.8965 -5.5141 21 6 -3.0798 -4.5875 -4.0588 22 6 -3.8463 -3.2517 -3.9468 23 6 -4.6685 -3.4939 -2.6543 24 8 -5.0155 -4.8884 -2.6832 25 6 -4.0724 -5.6105 -3.4878 26 6 0.2196 -2.3705 -1.1967 27 1 -0.4850 0.8400 0.0004 28 1 2.6891 -3.6849 0.7544 29 1 1.5402 -5.7606 0.1290 30 1 -0.4387 -5.6951 -1.3266 31 1 -1.3053 -6.5582 -2.9653 32 1 0.0429 -5.3927 -2.9154 33 1 -0.0365 -6.7655 -5.0443 34 1 -0.1275 -5.0092 -5.3198 35 1 -2.2487 -4.0415 -5.9633 36 1 -3.6762 -5.1013 -6.0580 37 1 -3.1599 -2.4137 -3.8249 38 1 -4.4999 -3.1003 -4.8058 39 1 -5.5692 -2.8800 -2.6586 40 1 -4.0652 -3.2727 -1.7737 41 1 -4.5910 -6.1174 -4.3014 42 1 -3.5417 -6.3396 -2.8755 43 1 -0.1476 -1.4258 -1.5697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194423417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:21 Heat of formation + Delta-G solvation = -75.108223 kcal Electronic energy + Delta-G solvation = -27995.926296 eV Core-core repulsion = 24199.916545 eV Total energy + Delta-G solvation = -3796.009752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.55184 -39.95718 -39.19207 -38.60558 -36.07553 -35.43792 -33.91162 -31.76427 -31.39722 -30.64277 -29.52702 -27.37167 -26.85450 -24.72099 -24.52865 -23.34159 -22.59360 -21.78168 -20.32310 -19.23593 -18.19123 -17.61731 -17.44324 -17.32007 -16.95590 -16.67860 -16.41521 -16.19324 -15.96008 -15.76184 -15.30593 -15.15890 -14.88441 -14.62369 -14.25186 -13.99737 -13.90806 -13.53958 -13.17373 -13.05842 -12.86344 -12.77154 -12.57281 -12.54956 -12.47183 -12.17292 -12.02178 -11.72180 -11.62219 -11.48383 -11.17199 -11.09179 -10.55589 -10.03043 -9.66888 -9.40911 -9.37473 -8.66901 -6.39766 0.41457 0.97682 1.35862 1.45769 1.49729 1.75224 1.92862 2.17638 2.68940 2.73601 2.85728 3.28058 3.55236 3.63621 3.71563 3.80503 3.89942 4.13851 4.20265 4.23702 4.26130 4.43055 4.51270 4.53649 4.54565 4.62524 4.68541 4.78420 4.79584 4.86104 4.89085 4.97084 5.07915 5.13366 5.20589 5.30676 5.48198 5.58030 5.81665 5.93370 5.94305 5.99731 6.02071 6.23219 6.30726 6.58545 6.86883 6.92217 7.18593 8.28892 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.004409 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.079821 B = 6348.423148 C = 7024.797760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.031 3.969 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.071 3.929 10 C -0.218 4.218 11 C -0.093 4.093 12 C -0.209 4.209 13 C -0.132 4.132 14 C 0.560 3.440 15 O -0.552 6.552 16 N -0.597 5.597 17 C 0.052 3.948 18 C 0.048 3.952 19 O -0.380 6.380 20 C 0.073 3.927 21 C 0.103 3.897 22 C -0.159 4.159 23 C 0.056 3.944 24 O -0.406 6.406 25 C 0.051 3.949 26 C -0.129 4.129 27 H 0.286 0.714 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.139 0.861 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 -10.054 -10.864 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.184 4.184 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.068 3.932 10 C -0.238 4.238 11 C -0.111 4.111 12 C -0.228 4.228 13 C -0.135 4.135 14 C 0.352 3.648 15 O -0.433 6.433 16 N -0.330 5.330 17 C -0.069 4.069 18 C -0.029 4.029 19 O -0.298 6.298 20 C -0.005 4.005 21 C 0.017 3.983 22 C -0.196 4.196 23 C -0.020 4.020 24 O -0.326 6.326 25 C -0.026 4.026 26 C -0.149 4.149 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.108 0.892 32 H 0.136 0.864 33 H 0.157 0.843 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.153 0.847 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.124 0.876 42 H 0.083 0.917 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.837 -9.684 -10.817 15.017 hybrid contribution 0.464 1.462 0.628 1.657 sum -3.373 -8.222 -10.189 13.521 Atomic orbital electron populations 1.69902 1.09137 1.30566 1.35358 1.26820 0.95373 1.04819 0.91361 0.85210 0.79222 0.75912 0.79460 1.18862 1.19658 1.17527 1.19869 0.98277 0.92102 1.42325 0.89884 1.17922 0.91815 0.93789 0.89628 1.21394 1.03926 0.92866 1.05597 1.20908 0.95431 0.97678 0.97065 1.21050 1.00442 0.95433 1.05868 1.19724 0.96508 0.95433 1.01831 1.18816 0.85157 0.81336 0.79441 1.90552 1.48520 1.35915 1.68301 1.47736 1.20889 1.23164 1.41180 1.23320 0.95029 0.89378 0.99178 1.23171 0.85861 1.04140 0.89690 1.87985 1.28835 1.37542 1.75484 1.22822 0.96637 0.89543 0.91463 1.22265 0.85315 0.97039 0.93664 1.23834 0.99588 0.98313 0.97872 1.23611 0.98739 0.81365 0.98262 1.88384 1.51588 1.20368 1.72217 1.23511 0.89854 0.93906 0.95322 1.21303 0.98406 0.95679 0.99545 0.90324 0.87515 0.84540 0.84685 0.89170 0.86396 0.84347 0.92973 0.92129 0.84665 0.87026 0.88469 0.89291 0.93707 0.87571 0.91672 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.15 10.96 21.82 0.24 -44.91 16 2 C 0.03 1.60 5.15 85.25 0.44 2.04 16 3 Si 0.98 38.69 29.59 68.60 2.03 40.72 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.50 -26.36 9.05 23.47 0.21 -26.15 16 8 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.07 3.73 5.56 -21.32 -0.12 3.61 16 10 C -0.22 -9.91 9.78 22.77 0.22 -9.68 16 11 C -0.09 -3.56 10.01 22.18 0.22 -3.34 16 12 C -0.21 -8.00 7.41 22.70 0.17 -7.83 16 13 C -0.13 -5.98 5.38 -20.13 -0.11 -6.09 16 14 C 0.56 23.38 7.00 86.80 0.61 23.99 16 15 O -0.55 -25.80 10.24 -3.86 -0.04 -25.84 16 16 N -0.60 -18.84 2.70 -773.61 -2.09 -20.93 16 17 C 0.05 1.28 4.65 86.31 0.40 1.68 16 18 C 0.05 0.95 6.95 72.08 0.50 1.45 16 19 O -0.38 -7.97 10.73 -148.98 -1.60 -9.57 16 20 C 0.07 1.50 5.60 71.75 0.40 1.90 16 21 C 0.10 2.78 0.82 4.09 0.00 2.78 16 22 C -0.16 -4.76 5.56 31.79 0.18 -4.58 16 23 C 0.06 1.90 7.13 72.70 0.52 2.42 16 24 O -0.41 -13.36 11.37 -148.98 -1.69 -15.05 16 25 C 0.05 1.36 7.07 72.16 0.51 1.87 16 26 C -0.13 -6.85 8.24 23.01 0.19 -6.66 16 27 H 0.29 14.48 8.30 -92.71 -0.77 13.72 16 28 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 29 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.14 4.22 5.59 -2.91 -0.02 4.20 16 31 H 0.09 1.92 7.40 -2.39 -0.02 1.90 16 32 H 0.12 3.17 4.59 -2.39 -0.01 3.16 16 33 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.14 2.01 7.88 -2.39 -0.02 1.99 16 37 H 0.11 4.12 5.21 -52.16 -0.27 3.85 16 38 H 0.10 2.24 8.02 -2.38 -0.02 2.22 16 39 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 40 H 0.04 1.90 5.80 -2.38 -0.01 1.89 16 41 H 0.11 2.18 7.63 -2.39 -0.02 2.16 16 42 H 0.07 1.76 7.36 -2.39 -0.02 1.75 16 43 H 0.10 5.69 6.09 -2.91 -0.02 5.67 16 Total: -1.00 -65.87 332.73 1.98 -63.89 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.78 Total: 34.26 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 4.35 Total: -22.58 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -1.85 Total: -65.84 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -3.33 Total: -50.46 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -65.87 1.98 -63.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194423417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.214 kcal (2) G-P(sol) polarization free energy of solvation -65.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds