Wall clock time and date at job start Tue Mar 31 2020 11:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38873 * 119.40807 * 2 1 4 4 C 1.38208 * 119.71240 * 180.02562 * 3 2 1 5 5 C 1.39314 * 118.33309 * 0.02562 * 4 3 2 6 6 O 1.34583 * 133.41260 * 180.29538 * 5 4 3 7 7 C 1.34872 * 110.81773 * 180.10286 * 6 5 4 8 8 C 1.47012 * 125.13815 * 179.87167 * 7 6 5 9 9 O 1.21549 * 120.00338 * 179.69723 * 8 7 6 10 10 O 1.34832 * 119.99865 * 359.70011 * 8 7 6 11 11 C 1.45206 * 116.99909 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46777 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47317 * 299.99939 * 12 11 10 14 14 C 1.52997 * 109.47269 * 60.00284 * 12 11 10 15 15 C 1.53006 * 109.46997 * 180.02562 * 12 11 10 16 16 C 1.50699 * 109.47240 * 180.02562 * 15 12 11 17 17 H 1.08003 * 119.99962 * 0.02562 * 16 15 12 18 18 C 1.37873 * 119.99861 * 179.97438 * 16 15 12 19 19 N 1.31522 * 120.00243 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99980 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47195 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46997 * 120.00167 * 20 18 16 23 23 H 1.48500 * 109.47074 * 240.00161 * 20 18 16 24 24 C 1.35827 * 109.72531 * 359.61170 * 7 6 5 25 25 C 1.40670 * 118.77710 * 359.97438 * 5 4 3 26 26 N 1.31422 * 119.40465 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46892 * 89.99718 * 1 2 3 28 28 H 1.08999 * 109.47008 * 209.99396 * 1 2 3 29 29 H 1.08999 * 109.46902 * 329.99710 * 1 2 3 30 30 H 1.07994 * 120.14480 * 0.05066 * 3 2 1 31 31 H 1.07994 * 120.83374 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47070 * 299.99988 * 11 10 8 33 33 H 1.09001 * 109.46626 * 60.00005 * 11 10 8 34 34 H 1.09002 * 109.47153 * 60.00359 * 13 12 11 35 35 H 1.09001 * 109.46832 * 180.02562 * 13 12 11 36 36 H 1.08992 * 109.47303 * 299.99871 * 13 12 11 37 37 H 1.09000 * 109.47140 * 59.99453 * 14 12 11 38 38 H 1.09001 * 109.47375 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47497 * 299.99829 * 14 12 11 40 40 H 1.09000 * 109.46866 * 300.00212 * 15 12 11 41 41 H 1.08996 * 109.47261 * 59.99820 * 15 12 11 42 42 H 0.96992 * 120.00032 * 179.97438 * 19 18 16 43 43 H 1.08005 * 126.93610 * 180.24501 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1890 1.2098 0.0000 4 6 3.5710 1.2171 -0.0005 5 6 4.2387 -0.0056 -0.0016 6 8 5.5400 -0.3488 0.0027 7 6 5.6820 -1.6900 -0.0032 8 6 6.9666 -2.4049 -0.0035 9 8 6.9859 -3.6202 -0.0035 10 8 8.1235 -1.7124 -0.0036 11 6 9.3536 -2.4839 -0.0033 12 6 10.5521 -1.5327 -0.0042 13 6 10.5030 -0.6516 -1.2540 14 6 10.5035 -0.6499 1.2444 15 6 11.8483 -2.3456 -0.0046 16 6 13.0288 -1.4089 -0.0048 17 1 12.8703 -0.3405 -0.0043 18 6 14.3110 -1.9157 -0.0046 19 7 14.5039 -3.2166 -0.0047 20 14 15.7742 -0.7545 -0.0056 21 1 15.2917 0.6499 -0.0059 22 1 16.5973 -0.9943 1.2070 23 1 16.5970 -0.9960 -1.2180 24 6 4.4588 -2.2805 -0.0030 25 6 3.4811 -1.1909 -0.0016 26 7 2.1523 -1.1449 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 1.6417 2.1408 0.0008 31 1 4.1196 2.1474 -0.0001 32 1 9.3884 -3.1119 0.8869 33 1 9.3884 -3.1125 -0.8932 34 1 9.5796 -0.0725 -1.2543 35 1 11.3570 0.0256 -1.2548 36 1 10.5377 -1.2805 -2.1436 37 1 10.5384 -1.2777 2.1348 38 1 11.3575 0.0274 1.2440 39 1 9.5800 -0.0708 1.2443 40 1 11.8835 -2.9737 0.8856 41 1 11.8827 -2.9743 -0.8943 42 1 15.4059 -3.5731 -0.0049 43 1 4.2496 -3.3401 -0.0033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195043086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:27 Heat of formation + Delta-G solvation = -60.234018 kcal Electronic energy + Delta-G solvation = -25475.984413 eV Core-core repulsion = 21680.619655 eV Total energy + Delta-G solvation = -3795.364758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.06386 -40.35444 -39.45699 -37.36611 -35.56966 -33.69015 -32.88504 -32.36524 -31.28232 -28.50705 -27.30862 -26.56116 -26.43832 -24.89433 -23.12737 -22.82921 -22.26062 -21.14059 -18.97240 -18.25349 -17.96843 -17.07879 -16.79616 -16.24697 -16.06360 -16.00860 -15.84692 -14.59225 -14.57068 -14.28883 -13.79443 -13.77232 -13.52710 -13.40342 -13.17159 -12.94834 -12.67077 -12.64069 -12.47883 -12.47462 -12.08635 -11.32844 -11.04811 -11.01821 -10.99914 -10.82340 -10.63903 -10.42794 -10.40388 -10.22982 -9.91807 -9.79686 -9.30512 -9.26936 -9.06797 -8.97200 -8.39264 -6.03285 -4.04420 -0.02483 0.65529 1.27947 1.86328 2.59191 2.63897 3.22737 3.29276 3.37325 3.40433 3.58923 3.97410 4.17078 4.33626 4.42813 4.53812 4.72634 4.82058 5.04580 5.14353 5.16311 5.32224 5.33346 5.37685 5.43390 5.43406 5.52513 5.69644 5.74645 5.88958 5.94580 6.13406 6.31414 6.40833 6.45000 6.49373 6.68290 6.69393 7.08060 7.08113 7.09831 7.41616 7.57512 7.58811 7.68750 7.95224 8.36611 9.00002 9.58856 11.08342 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034439 B = 0.002271 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.835230 B =12326.720294 C =12937.890414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.129 3.871 3 C -0.139 4.139 4 C -0.055 4.055 5 C 0.015 3.985 6 O -0.161 6.161 7 C 0.023 3.977 8 C 0.542 3.458 9 O -0.477 6.477 10 O -0.333 6.333 11 C 0.077 3.923 12 C -0.058 4.058 13 C -0.128 4.128 14 C -0.128 4.128 15 C 0.035 3.965 16 C -0.509 4.509 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.099 4.099 25 C 0.066 3.934 26 N -0.439 5.439 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.260 0.740 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.749 8.711 -0.004 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.018 4.018 3 C -0.158 4.158 4 C -0.081 4.081 5 C -0.036 4.036 6 O -0.060 6.060 7 C -0.028 4.028 8 C 0.385 3.615 9 O -0.366 6.366 10 O -0.248 6.248 11 C 0.004 3.996 12 C -0.058 4.058 13 C -0.185 4.185 14 C -0.185 4.185 15 C -0.002 4.002 16 C -0.547 4.547 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.119 4.119 25 C -0.063 4.063 26 N -0.150 5.150 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.170 0.830 31 H 0.169 0.831 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -26.713 7.584 0.000 27.768 hybrid contribution 1.452 1.020 -0.011 1.775 sum -25.260 8.604 -0.012 26.686 Atomic orbital electron populations 1.20724 0.87835 1.03877 1.03472 1.21368 0.97323 0.87376 0.95738 1.21914 0.93040 0.99934 1.00962 1.20540 0.93474 0.95025 0.99047 1.20620 0.82431 0.96966 1.03545 1.84146 1.24436 1.22157 1.75259 1.20916 0.93438 0.80665 1.07756 1.19250 0.83106 0.84983 0.74208 1.90961 1.87204 1.12904 1.45559 1.86665 1.14606 1.41346 1.82213 1.23737 0.78914 0.94401 1.02515 1.20846 0.93086 0.95647 0.96271 1.21735 1.00778 0.99528 0.96453 1.21735 1.00779 0.99518 0.96460 1.19142 0.88692 0.94824 0.97579 1.21180 0.90263 0.93060 1.50241 0.91984 1.25023 0.99077 0.95002 0.95488 1.69973 1.21434 1.11125 1.50898 0.86547 0.82818 0.81178 0.77534 1.19714 1.21106 1.21100 1.22505 0.87797 1.00174 1.01463 1.20496 0.90398 0.91877 1.03515 1.66837 1.06960 1.29712 1.11449 0.90056 0.90169 0.90262 0.82975 0.83118 0.90950 0.90955 0.94149 0.91415 0.93651 0.93652 0.91417 0.94147 0.96229 0.96222 0.93044 0.80035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.16 36.01 0.37 -0.12 16 2 C 0.13 1.07 6.78 -82.53 -0.56 0.51 16 3 C -0.14 -0.91 9.71 -39.36 -0.38 -1.29 16 4 C -0.05 -0.45 10.19 -39.19 -0.40 -0.85 16 5 C 0.02 0.18 7.42 -38.26 -0.28 -0.11 16 6 O -0.16 -2.16 10.59 2.64 0.03 -2.14 16 7 C 0.02 0.31 7.11 -36.89 -0.26 0.05 16 8 C 0.54 8.49 7.94 34.29 0.27 8.77 16 9 O -0.48 -8.20 16.62 -19.30 -0.32 -8.52 16 10 O -0.33 -5.60 8.89 -42.65 -0.38 -5.98 16 11 C 0.08 1.39 4.33 37.16 0.16 1.55 16 12 C -0.06 -1.16 0.61 -154.51 -0.09 -1.26 16 13 C -0.13 -2.41 8.08 37.16 0.30 -2.11 16 14 C -0.13 -2.41 8.08 37.16 0.30 -2.11 16 15 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 16 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 17 H 0.06 1.60 5.68 -52.48 -0.30 1.31 16 18 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 19 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.10 -1.22 10.81 -37.16 -0.40 -1.62 16 25 C 0.07 0.82 7.52 -83.18 -0.63 0.19 16 26 N -0.44 -5.04 10.32 -6.13 -0.06 -5.10 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.20 8.07 -51.93 -0.42 -0.22 16 30 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 31 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 35 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 39 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.18 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -31.59 366.42 -7.57 -39.16 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.99 Total: -3.51 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -2.08 Total: -10.08 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.67 Total: -30.65 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.67 Total: -16.63 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.59 -7.57 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195043086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.073 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds