Wall clock time and date at job start Tue Mar 31 2020 11:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38873 * 119.40807 * 2 1 4 4 C 1.38208 * 119.71240 * 180.02562 * 3 2 1 5 5 C 1.39314 * 118.33309 * 0.02562 * 4 3 2 6 6 O 1.34583 * 133.41260 * 180.29538 * 5 4 3 7 7 C 1.34872 * 110.81773 * 180.10286 * 6 5 4 8 8 C 1.47012 * 125.13815 * 179.87167 * 7 6 5 9 9 O 1.21549 * 120.00338 * 179.69723 * 8 7 6 10 10 O 1.34832 * 119.99865 * 359.70011 * 8 7 6 11 11 C 1.45206 * 116.99909 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46777 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47317 * 299.99939 * 12 11 10 14 14 C 1.52997 * 109.47269 * 60.00284 * 12 11 10 15 15 C 1.53006 * 109.46997 * 180.02562 * 12 11 10 16 16 C 1.50699 * 109.47240 * 180.02562 * 15 12 11 17 17 H 1.08003 * 119.99962 * 0.02562 * 16 15 12 18 18 C 1.37873 * 119.99861 * 179.97438 * 16 15 12 19 19 N 1.31522 * 120.00243 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99980 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47195 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46997 * 120.00167 * 20 18 16 23 23 H 1.48500 * 109.47074 * 240.00161 * 20 18 16 24 24 C 1.35827 * 109.72531 * 359.61170 * 7 6 5 25 25 C 1.40670 * 118.77710 * 359.97438 * 5 4 3 26 26 N 1.31422 * 119.40465 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46892 * 89.99718 * 1 2 3 28 28 H 1.08999 * 109.47008 * 209.99396 * 1 2 3 29 29 H 1.08999 * 109.46902 * 329.99710 * 1 2 3 30 30 H 1.07994 * 120.14480 * 0.05066 * 3 2 1 31 31 H 1.07994 * 120.83374 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47070 * 299.99988 * 11 10 8 33 33 H 1.09001 * 109.46626 * 60.00005 * 11 10 8 34 34 H 1.09002 * 109.47153 * 60.00359 * 13 12 11 35 35 H 1.09001 * 109.46832 * 180.02562 * 13 12 11 36 36 H 1.08992 * 109.47303 * 299.99871 * 13 12 11 37 37 H 1.09000 * 109.47140 * 59.99453 * 14 12 11 38 38 H 1.09001 * 109.47375 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47497 * 299.99829 * 14 12 11 40 40 H 1.09000 * 109.46866 * 300.00212 * 15 12 11 41 41 H 1.08996 * 109.47261 * 59.99820 * 15 12 11 42 42 H 0.96992 * 120.00032 * 179.97438 * 19 18 16 43 43 H 1.08005 * 126.93610 * 180.24501 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1890 1.2098 0.0000 4 6 3.5710 1.2171 -0.0005 5 6 4.2387 -0.0056 -0.0016 6 8 5.5400 -0.3488 0.0027 7 6 5.6820 -1.6900 -0.0032 8 6 6.9666 -2.4049 -0.0035 9 8 6.9859 -3.6202 -0.0035 10 8 8.1235 -1.7124 -0.0036 11 6 9.3536 -2.4839 -0.0033 12 6 10.5521 -1.5327 -0.0042 13 6 10.5030 -0.6516 -1.2540 14 6 10.5035 -0.6499 1.2444 15 6 11.8483 -2.3456 -0.0046 16 6 13.0288 -1.4089 -0.0048 17 1 12.8703 -0.3405 -0.0043 18 6 14.3110 -1.9157 -0.0046 19 7 14.5039 -3.2166 -0.0047 20 14 15.7742 -0.7545 -0.0056 21 1 15.2917 0.6499 -0.0059 22 1 16.5973 -0.9943 1.2070 23 1 16.5970 -0.9960 -1.2180 24 6 4.4588 -2.2805 -0.0030 25 6 3.4811 -1.1909 -0.0016 26 7 2.1523 -1.1449 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 1.6417 2.1408 0.0008 31 1 4.1196 2.1474 -0.0001 32 1 9.3884 -3.1119 0.8869 33 1 9.3884 -3.1125 -0.8932 34 1 9.5796 -0.0725 -1.2543 35 1 11.3570 0.0256 -1.2548 36 1 10.5377 -1.2805 -2.1436 37 1 10.5384 -1.2777 2.1348 38 1 11.3575 0.0274 1.2440 39 1 9.5800 -0.0708 1.2443 40 1 11.8835 -2.9737 0.8856 41 1 11.8827 -2.9743 -0.8943 42 1 15.4059 -3.5731 -0.0049 43 1 4.2496 -3.3401 -0.0033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195043086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:26 Heat of formation + Delta-G solvation = -77.371333 kcal Electronic energy + Delta-G solvation = -25476.727543 eV Core-core repulsion = 21680.619655 eV Total energy + Delta-G solvation = -3796.107887 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.93185 -41.62388 -40.21585 -38.87357 -37.09431 -34.48097 -34.42629 -33.51812 -32.12342 -29.59500 -28.94604 -27.99220 -27.90795 -25.97779 -24.82140 -23.55432 -23.24902 -22.18603 -20.19285 -19.79952 -18.76577 -18.40178 -18.14369 -17.94287 -17.19891 -16.89313 -16.63586 -16.49832 -15.39130 -15.36586 -15.11631 -14.90697 -14.76483 -14.42391 -14.20186 -14.10204 -14.08648 -13.87965 -13.50642 -13.15696 -13.02706 -13.01294 -12.73570 -12.72290 -12.40742 -12.34745 -12.17404 -11.96308 -11.94875 -11.77815 -11.43036 -11.08998 -10.91602 -10.61944 -10.53403 -10.12364 -9.83313 -8.16101 -6.23475 -0.90501 -0.04748 0.40953 0.84176 1.41682 1.42828 1.51559 1.53176 1.55844 2.43432 2.52654 2.75225 3.18631 3.20968 3.39939 3.60182 3.71530 3.84067 3.89466 4.01629 4.12431 4.18482 4.38135 4.43653 4.55680 4.58849 4.69550 4.71476 4.78880 4.86010 4.98572 4.98933 5.04680 5.08226 5.10582 5.15085 5.34604 5.40284 5.44216 5.47544 5.52060 5.66319 5.72405 5.86828 6.25353 6.34463 6.72539 6.90152 7.43966 8.96548 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034439 B = 0.002271 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.835230 B =12326.720294 C =12937.890414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.124 3.876 3 C -0.117 4.117 4 C -0.059 4.059 5 C -0.001 4.001 6 O -0.173 6.173 7 C -0.001 4.001 8 C 0.548 3.452 9 O -0.500 6.500 10 O -0.334 6.334 11 C 0.085 3.915 12 C -0.055 4.055 13 C -0.121 4.121 14 C -0.121 4.121 15 C 0.040 3.960 16 C -0.514 4.514 17 H 0.071 0.929 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.960 3.040 21 H -0.259 1.259 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.085 4.085 25 C 0.038 3.962 26 N -0.469 5.469 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.201 0.799 31 H 0.179 0.821 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.061 0.939 40 H -0.006 1.006 41 H -0.006 1.006 42 H 0.261 0.739 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.175 11.933 -0.007 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.024 4.024 3 C -0.136 4.136 4 C -0.085 4.085 5 C -0.052 4.052 6 O -0.073 6.073 7 C -0.051 4.051 8 C 0.392 3.608 9 O -0.390 6.390 10 O -0.249 6.249 11 C 0.012 3.988 12 C -0.055 4.055 13 C -0.179 4.179 14 C -0.179 4.179 15 C 0.003 3.997 16 C -0.552 4.552 17 H 0.089 0.911 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.785 3.215 21 H -0.183 1.183 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.106 4.106 25 C -0.090 4.090 26 N -0.181 5.181 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.129 0.871 30 H 0.218 0.782 31 H 0.196 0.804 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.012 0.988 41 H 0.012 0.988 42 H 0.069 0.931 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -29.150 10.819 -0.003 31.093 hybrid contribution 1.929 0.086 -0.012 1.931 sum -27.222 10.906 -0.015 29.325 Atomic orbital electron populations 1.20876 0.85273 1.05068 1.04573 1.22162 0.99054 0.87269 0.93866 1.22487 0.92403 1.01131 0.97550 1.21074 0.94312 0.94786 0.98297 1.21137 0.81609 0.98240 1.04199 1.84078 1.25673 1.21714 1.75883 1.20468 0.92502 0.81249 1.10905 1.19444 0.83208 0.84877 0.73275 1.90942 1.87485 1.13789 1.46761 1.86629 1.14531 1.41100 1.82634 1.23411 0.79272 0.93801 1.02338 1.20657 0.91606 0.95620 0.97647 1.21664 1.01406 0.99169 0.95614 1.21664 1.01407 0.99158 0.95623 1.18989 0.91125 0.94516 0.95044 1.21557 0.90919 0.93742 1.48972 0.91091 1.25930 1.02291 0.96510 0.95383 1.70112 1.22061 1.13114 1.52419 0.85465 0.79057 0.79584 0.77359 1.18254 1.20930 1.20922 1.22720 0.87705 1.00870 0.99272 1.20550 0.91077 0.91986 1.05406 1.66872 1.06556 1.31718 1.12937 0.88826 0.90987 0.87109 0.78228 0.80362 0.91236 0.91242 0.91983 0.92375 0.93930 0.93931 0.92376 0.91981 0.98804 0.98792 0.93062 0.79194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.16 71.24 0.72 0.12 16 2 C 0.12 1.69 6.78 42.77 0.29 1.98 16 3 C -0.12 -1.03 9.71 22.41 0.22 -0.82 16 4 C -0.06 -0.79 10.19 22.52 0.23 -0.56 16 5 C 0.00 -0.03 7.42 23.12 0.17 0.14 16 6 O -0.17 -4.64 10.59 -10.21 -0.11 -4.75 16 7 C 0.00 -0.04 7.11 24.01 0.17 0.13 16 8 C 0.55 17.56 7.94 70.12 0.56 18.11 16 9 O -0.50 -17.72 16.62 19.68 0.33 -17.39 16 10 O -0.33 -11.25 8.89 -55.72 -0.50 -11.75 16 11 C 0.08 3.13 4.33 71.98 0.31 3.45 16 12 C -0.06 -2.22 0.61 -52.18 -0.03 -2.26 16 13 C -0.12 -4.53 8.08 71.98 0.58 -3.95 16 14 C -0.12 -4.53 8.08 71.98 0.58 -3.95 16 15 C 0.04 2.06 4.04 29.85 0.12 2.18 16 16 C -0.51 -27.75 7.65 25.60 0.20 -27.56 16 17 H 0.07 3.64 5.68 -2.91 -0.02 3.63 16 18 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 19 N -0.94 -56.42 13.29 21.45 0.28 -56.14 16 20 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 C -0.09 -2.15 10.81 23.84 0.26 -1.89 16 25 C 0.04 0.91 7.52 41.69 0.31 1.23 16 26 N -0.47 -10.25 10.32 -173.31 -1.79 -12.03 16 27 H 0.09 0.38 8.14 -2.39 -0.02 0.37 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 -0.01 8.07 -2.39 -0.02 -0.03 16 30 H 0.20 -0.16 8.06 -2.91 -0.02 -0.18 16 31 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.06 2.04 7.68 -2.39 -0.02 2.02 16 35 H 0.06 2.26 6.62 -2.39 -0.02 2.25 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 2.26 6.62 -2.39 -0.02 2.24 16 39 H 0.06 2.04 7.68 -2.39 -0.02 2.02 16 40 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 41 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 42 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -70.71 366.42 6.42 -64.29 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.02 Total: 5.41 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 5.15 Total: -13.40 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.50 Total: -68.17 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.28 Total: -33.89 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.71 6.42 -64.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195043086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.081 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds