Wall clock time and date at job start Tue Mar 31 2020 12:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42898 * 110.91737 * 2 1 4 4 C 1.55159 * 111.00236 * 123.90039 * 2 1 3 5 5 C 1.54332 * 103.02256 * 153.38262 * 4 2 1 6 6 N 1.47021 * 107.26343 * 338.13840 * 5 4 2 7 7 C 1.34783 * 125.64823 * 178.85387 * 6 5 4 8 8 O 1.21717 * 119.99936 * 179.68995 * 7 6 5 9 9 C 1.46252 * 119.99778 * 359.68702 * 7 6 5 10 10 C 1.35025 * 120.00051 * 186.98912 * 9 7 6 11 11 C 1.46959 * 119.99598 * 10.95590 * 10 9 7 12 12 C 1.40028 * 120.09959 * 226.09999 * 11 10 9 13 13 C 1.37599 * 119.89434 * 179.78682 * 12 11 10 14 14 C 1.39178 * 120.10628 * 0.47654 * 13 12 11 15 15 O 1.35563 * 119.90098 * 179.76126 * 14 13 12 16 16 C 1.34784 * 116.99971 * 174.24480 * 15 14 13 17 17 H 1.07998 * 120.00041 * 5.07495 * 16 15 14 18 18 C 1.38718 * 119.99990 * 185.06547 * 16 15 14 19 19 N 1.31509 * 119.99867 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00017 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47233 * 89.99953 * 20 18 16 22 22 H 1.48497 * 109.47227 * 210.00397 * 20 18 16 23 23 H 1.48496 * 109.47157 * 330.00473 * 20 18 16 24 24 C 1.39180 * 120.19772 * 359.77975 * 14 13 12 25 25 C 1.37597 * 120.10414 * 359.97438 * 24 14 13 26 26 C 1.47423 * 108.70413 * 358.58347 * 6 5 4 27 27 H 1.09004 * 109.47343 * 182.44902 * 1 2 3 28 28 H 1.08998 * 109.47256 * 302.45245 * 1 2 3 29 29 H 1.09006 * 109.47222 * 62.44985 * 1 2 3 30 30 H 0.96707 * 113.99749 * 297.54514 * 3 2 1 31 31 H 1.09004 * 110.71825 * 271.93910 * 4 2 1 32 32 H 1.09006 * 110.72000 * 35.21044 * 4 2 1 33 33 H 1.09005 * 109.99092 * 218.66348 * 5 4 2 34 34 H 1.08997 * 109.78310 * 97.49252 * 5 4 2 35 35 H 1.08003 * 120.00083 * 6.99291 * 9 7 6 36 36 H 1.08001 * 120.00136 * 190.67717 * 10 9 7 37 37 H 1.07998 * 120.04974 * 0.02632 * 12 11 10 38 38 H 1.08002 * 119.94959 * 180.25402 * 13 12 11 39 39 H 0.96998 * 119.99781 * 179.97438 * 19 18 16 40 40 H 1.07996 * 119.94361 * 179.97438 * 24 14 13 41 41 H 1.07995 * 120.05192 * 179.97438 * 25 24 14 42 42 H 1.09005 * 110.36279 * 143.19448 * 26 6 5 43 43 H 1.08999 * 110.36937 * 265.40620 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0401 1.3348 0.0000 4 6 2.0860 -0.8079 1.2023 5 6 3.4656 -1.2794 0.6961 6 7 3.4271 -1.2432 -0.7731 7 6 4.4476 -1.5618 -1.5938 8 8 4.3002 -1.5004 -2.8005 9 6 5.7322 -1.9813 -1.0344 10 6 6.7950 -2.1642 -1.8470 11 6 6.7365 -1.7158 -3.2453 12 6 7.1764 -2.5599 -4.2723 13 6 7.1157 -2.1374 -5.5805 14 6 6.6273 -0.8697 -5.8828 15 8 6.5738 -0.4559 -7.1726 16 6 5.9819 0.7314 -7.4103 17 1 5.6504 1.3443 -6.5852 18 6 5.7988 1.1663 -8.7147 19 7 6.2022 0.4199 -9.7195 20 14 4.9791 2.8122 -9.0441 21 1 6.0120 3.8779 -9.0971 22 1 4.2591 2.7558 -10.3416 23 1 4.0146 3.1116 -7.9554 24 6 6.1940 -0.0253 -4.8647 25 6 6.2462 -0.4411 -3.5541 26 6 2.0852 -0.8068 -1.2002 27 1 -0.3634 -1.0268 0.0439 28 1 -0.3633 0.5514 0.8672 29 1 -0.3634 0.4753 -0.9112 30 1 1.7989 1.8481 -0.7833 31 1 2.1920 -0.1698 2.0797 32 1 1.4466 -1.6632 1.4210 33 1 3.6600 -2.2964 1.0369 34 1 4.2423 -0.6085 1.0632 35 1 5.8307 -2.1449 0.0286 36 1 7.6896 -2.6359 -1.4680 37 1 7.5591 -3.5423 -4.0384 38 1 7.4509 -2.7893 -6.3737 39 1 6.0738 0.7238 -10.6316 40 1 5.8161 0.9577 -5.1039 41 1 5.9102 0.2149 -2.7648 42 1 2.1560 -0.1722 -2.0836 43 1 1.4524 -1.6705 -1.4042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255915430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:18 Heat of formation + Delta-G solvation = -51.734369 kcal Electronic energy + Delta-G solvation = -26177.393810 eV Core-core repulsion = 22382.397625 eV Total energy + Delta-G solvation = -3794.996185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29923 -39.04437 -38.22513 -36.41853 -35.36120 -33.04826 -32.17020 -31.86363 -30.06903 -29.81855 -28.39082 -26.77891 -25.27100 -23.72274 -22.56715 -21.66829 -20.80135 -20.51677 -18.41114 -17.95383 -17.42323 -17.09989 -16.62662 -15.91811 -15.21122 -14.96605 -14.60278 -14.47771 -14.29254 -13.92739 -13.74645 -13.59570 -13.47204 -13.18367 -13.08216 -12.73665 -12.60463 -12.46667 -12.29646 -12.12114 -11.94537 -11.66279 -11.65759 -11.28190 -10.94555 -10.93261 -10.73001 -10.56034 -10.40804 -10.39594 -9.47631 -9.35514 -9.14663 -8.67641 -8.55543 -7.89693 -6.85734 -6.43239 -3.98792 1.29194 2.43702 2.70085 3.07568 3.14904 3.16091 3.20747 3.62027 3.76238 3.99414 4.13682 4.28895 4.51914 4.71307 4.89167 4.95401 5.01671 5.13611 5.23659 5.28896 5.30628 5.35811 5.37266 5.45278 5.54323 5.64412 5.72401 5.73585 5.76612 5.78442 5.87586 6.18896 6.27202 6.38713 6.50314 6.66259 6.80888 7.06305 7.15554 7.35102 7.35453 7.49974 7.53436 7.66350 7.94725 8.03791 8.52661 9.02691 9.74518 10.74789 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.003526 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.924805 B = 7939.183848 C = 9680.585069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 O -0.549 6.549 4 C -0.118 4.118 5 C 0.107 3.893 6 N -0.620 5.620 7 C 0.556 3.444 8 O -0.509 6.509 9 C -0.258 4.258 10 C 0.025 3.975 11 C -0.185 4.185 12 C -0.047 4.047 13 C -0.207 4.207 14 C 0.170 3.830 15 O -0.174 6.174 16 C -0.389 4.389 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.241 4.241 25 C 0.009 3.991 26 C 0.083 3.917 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.381 0.619 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.074 -2.464 22.501 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.071 3.929 3 O -0.356 6.356 4 C -0.156 4.156 5 C -0.016 4.016 6 N -0.356 5.356 7 C 0.349 3.651 8 O -0.385 6.385 9 C -0.279 4.279 10 C 0.005 3.995 11 C -0.186 4.186 12 C -0.065 4.065 13 C -0.226 4.226 14 C 0.115 3.885 15 O -0.076 6.076 16 C -0.465 4.465 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.260 4.260 25 C -0.009 4.009 26 C -0.040 4.040 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.229 0.771 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.141 0.859 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.755 -2.730 21.856 23.351 hybrid contribution -0.809 0.967 -0.489 1.352 sum -8.564 -1.763 21.367 23.087 Atomic orbital electron populations 1.22276 0.94172 1.03175 1.03069 1.22293 0.92520 0.83051 0.94991 1.86511 1.78156 1.23609 1.47293 1.22690 0.95993 0.99249 0.97688 1.21934 0.97911 1.00892 0.80908 1.48352 1.12193 1.68707 1.06366 1.18200 0.83775 0.77240 0.85931 1.91008 1.82355 1.51674 1.13488 1.22611 0.93088 1.12644 0.99576 1.22350 0.95553 0.88880 0.92672 1.18297 1.11981 0.96642 0.91707 1.20612 0.96799 0.97467 0.91628 1.19999 1.10968 0.95408 0.96267 1.19519 0.91674 0.92175 0.85120 1.83900 1.66815 1.36661 1.20257 1.21385 1.37954 0.93719 0.93438 0.88978 1.25308 0.97232 0.99744 0.94258 1.70023 1.43450 1.36979 0.99139 0.85708 0.79114 0.80208 0.78402 1.19835 1.20219 1.19179 1.20951 1.10763 1.01809 0.92479 1.20548 0.91421 0.93884 0.95062 1.22840 0.84395 0.98886 0.97885 0.91124 0.91263 0.91753 0.77053 0.89175 0.89307 0.91517 0.91271 0.86196 0.85932 0.87160 0.86630 0.91999 0.85859 0.88583 0.90040 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.01 37.15 0.33 -0.75 16 2 C 0.11 0.97 1.32 -88.47 -0.12 0.86 16 3 O -0.55 -5.47 13.18 -35.23 -0.46 -5.93 16 4 C -0.12 -0.87 6.15 -24.89 -0.15 -1.03 16 5 C 0.11 0.98 6.06 -3.06 -0.02 0.96 16 6 N -0.62 -8.01 3.33 -172.21 -0.57 -8.59 16 7 C 0.56 9.07 6.90 -13.04 -0.09 8.98 16 8 O -0.51 -10.63 12.60 5.17 0.07 -10.56 16 9 C -0.26 -3.56 9.43 -37.51 -0.35 -3.91 16 10 C 0.03 0.37 9.79 -37.19 -0.36 0.00 16 11 C -0.19 -3.54 4.42 -105.02 -0.46 -4.00 16 12 C -0.05 -0.91 9.78 -39.14 -0.38 -1.29 16 13 C -0.21 -4.72 9.97 -39.47 -0.39 -5.11 16 14 C 0.17 4.40 6.66 -38.88 -0.26 4.14 16 15 O -0.17 -5.18 9.74 0.75 0.01 -5.17 16 16 C -0.39 -11.30 9.48 30.91 0.29 -11.00 16 17 H 0.09 2.51 5.18 -52.49 -0.27 2.24 16 18 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -25.80 13.67 55.48 0.76 -25.04 16 20 Si 0.94 21.07 29.55 -169.99 -5.02 16.04 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 C -0.24 -5.77 9.14 -39.47 -0.36 -6.13 16 25 C 0.01 0.20 6.69 -39.15 -0.26 -0.06 16 26 C 0.08 0.95 6.10 -2.53 -0.02 0.94 16 27 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.38 2.79 9.11 45.56 0.42 3.21 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.50 8.01 -51.93 -0.42 0.08 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.12 1.24 7.39 -52.48 -0.39 0.86 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.12 2.97 5.62 -52.49 -0.29 2.67 16 41 H 0.10 1.90 7.28 -52.49 -0.38 1.52 16 42 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 43 H 0.07 0.77 8.04 -51.93 -0.42 0.36 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -35.70 359.78 -7.62 -43.32 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.11 Total: 6.92 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.70 Total: -16.41 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.19 Total: -33.62 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.39 Total: -21.67 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.70 -7.62 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255915430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.413 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds