Wall clock time and date at job start Tue Mar 31 2020 12:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42898 * 110.91737 * 2 1 4 4 C 1.55159 * 111.00236 * 123.90039 * 2 1 3 5 5 C 1.54332 * 103.02256 * 153.38262 * 4 2 1 6 6 N 1.47021 * 107.26343 * 338.13840 * 5 4 2 7 7 C 1.34783 * 125.64823 * 178.85387 * 6 5 4 8 8 O 1.21717 * 119.99936 * 179.68995 * 7 6 5 9 9 C 1.46252 * 119.99778 * 359.68702 * 7 6 5 10 10 C 1.35025 * 120.00051 * 186.98912 * 9 7 6 11 11 C 1.46959 * 119.99598 * 10.95590 * 10 9 7 12 12 C 1.40028 * 120.09959 * 226.09999 * 11 10 9 13 13 C 1.37599 * 119.89434 * 179.78682 * 12 11 10 14 14 C 1.39178 * 120.10628 * 0.47654 * 13 12 11 15 15 O 1.35563 * 119.90098 * 179.76126 * 14 13 12 16 16 C 1.34784 * 116.99971 * 174.24480 * 15 14 13 17 17 H 1.07998 * 120.00041 * 5.07495 * 16 15 14 18 18 C 1.38718 * 119.99990 * 185.06547 * 16 15 14 19 19 N 1.31509 * 119.99867 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00017 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47233 * 89.99953 * 20 18 16 22 22 H 1.48497 * 109.47227 * 210.00397 * 20 18 16 23 23 H 1.48496 * 109.47157 * 330.00473 * 20 18 16 24 24 C 1.39180 * 120.19772 * 359.77975 * 14 13 12 25 25 C 1.37597 * 120.10414 * 359.97438 * 24 14 13 26 26 C 1.47423 * 108.70413 * 358.58347 * 6 5 4 27 27 H 1.09004 * 109.47343 * 182.44902 * 1 2 3 28 28 H 1.08998 * 109.47256 * 302.45245 * 1 2 3 29 29 H 1.09006 * 109.47222 * 62.44985 * 1 2 3 30 30 H 0.96707 * 113.99749 * 297.54514 * 3 2 1 31 31 H 1.09004 * 110.71825 * 271.93910 * 4 2 1 32 32 H 1.09006 * 110.72000 * 35.21044 * 4 2 1 33 33 H 1.09005 * 109.99092 * 218.66348 * 5 4 2 34 34 H 1.08997 * 109.78310 * 97.49252 * 5 4 2 35 35 H 1.08003 * 120.00083 * 6.99291 * 9 7 6 36 36 H 1.08001 * 120.00136 * 190.67717 * 10 9 7 37 37 H 1.07998 * 120.04974 * 0.02632 * 12 11 10 38 38 H 1.08002 * 119.94959 * 180.25402 * 13 12 11 39 39 H 0.96998 * 119.99781 * 179.97438 * 19 18 16 40 40 H 1.07996 * 119.94361 * 179.97438 * 24 14 13 41 41 H 1.07995 * 120.05192 * 179.97438 * 25 24 14 42 42 H 1.09005 * 110.36279 * 143.19448 * 26 6 5 43 43 H 1.08999 * 110.36937 * 265.40620 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0401 1.3348 0.0000 4 6 2.0860 -0.8079 1.2023 5 6 3.4656 -1.2794 0.6961 6 7 3.4271 -1.2432 -0.7731 7 6 4.4476 -1.5618 -1.5938 8 8 4.3002 -1.5004 -2.8005 9 6 5.7322 -1.9813 -1.0344 10 6 6.7950 -2.1642 -1.8470 11 6 6.7365 -1.7158 -3.2453 12 6 7.1764 -2.5599 -4.2723 13 6 7.1157 -2.1374 -5.5805 14 6 6.6273 -0.8697 -5.8828 15 8 6.5738 -0.4559 -7.1726 16 6 5.9819 0.7314 -7.4103 17 1 5.6504 1.3443 -6.5852 18 6 5.7988 1.1663 -8.7147 19 7 6.2022 0.4199 -9.7195 20 14 4.9791 2.8122 -9.0441 21 1 6.0120 3.8779 -9.0971 22 1 4.2591 2.7558 -10.3416 23 1 4.0146 3.1116 -7.9554 24 6 6.1940 -0.0253 -4.8647 25 6 6.2462 -0.4411 -3.5541 26 6 2.0852 -0.8068 -1.2002 27 1 -0.3634 -1.0268 0.0439 28 1 -0.3633 0.5514 0.8672 29 1 -0.3634 0.4753 -0.9112 30 1 1.7989 1.8481 -0.7833 31 1 2.1920 -0.1698 2.0797 32 1 1.4466 -1.6632 1.4210 33 1 3.6600 -2.2964 1.0369 34 1 4.2423 -0.6085 1.0632 35 1 5.8307 -2.1449 0.0286 36 1 7.6896 -2.6359 -1.4680 37 1 7.5591 -3.5423 -4.0384 38 1 7.4509 -2.7893 -6.3737 39 1 6.0738 0.7238 -10.6316 40 1 5.8161 0.9577 -5.1039 41 1 5.9102 0.2149 -2.7648 42 1 2.1560 -0.1722 -2.0836 43 1 1.4524 -1.6705 -1.4042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255915430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:17 Heat of formation + Delta-G solvation = -78.095553 kcal Electronic energy + Delta-G solvation = -26178.536917 eV Core-core repulsion = 22382.397625 eV Total energy + Delta-G solvation = -3796.139292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36803 -40.68236 -39.49751 -38.07812 -36.31837 -34.64130 -33.96051 -32.75337 -31.81268 -30.55603 -29.88374 -27.88168 -27.21235 -24.73526 -23.86178 -23.38756 -21.96011 -21.48950 -19.90251 -19.55406 -18.99349 -18.20699 -17.88142 -16.88708 -16.61793 -16.31218 -16.22873 -15.75930 -15.58854 -15.37083 -15.11179 -14.90837 -14.77688 -14.49205 -14.30622 -14.01575 -13.81815 -13.65072 -13.53140 -13.30326 -13.09084 -12.96495 -12.65247 -12.54801 -12.44081 -12.29537 -12.23810 -12.15297 -11.55823 -11.26091 -11.17369 -10.97479 -10.67458 -10.41979 -9.77958 -9.43794 -8.61020 -8.51103 -6.18032 -0.02002 0.68693 1.06798 1.30023 1.41542 1.48461 2.08704 2.14736 2.41602 2.83626 3.10424 3.18088 3.39099 3.51139 3.61048 3.86759 3.94627 3.99630 4.06901 4.16348 4.27565 4.36917 4.50790 4.53383 4.58628 4.64795 4.71142 4.72577 4.80747 4.90536 5.02219 5.07227 5.08798 5.14467 5.15529 5.21520 5.26512 5.34895 5.48253 5.64571 5.70452 5.82852 5.99956 6.22730 6.57529 6.71263 6.92895 7.31548 7.73952 8.71949 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.003526 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.924805 B = 7939.183848 C = 9680.585069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 O -0.566 6.566 4 C -0.113 4.113 5 C 0.098 3.902 6 N -0.617 5.617 7 C 0.538 3.462 8 O -0.571 6.571 9 C -0.229 4.229 10 C 0.008 3.992 11 C -0.157 4.157 12 C -0.046 4.046 13 C -0.218 4.218 14 C 0.126 3.874 15 O -0.228 6.228 16 C -0.417 4.417 17 H 0.095 0.905 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.019 2.981 21 H -0.258 1.258 22 H -0.266 1.266 23 H -0.259 1.259 24 C -0.254 4.254 25 C 0.005 3.995 26 C 0.075 3.925 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.388 0.612 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.169 0.831 36 H 0.175 0.825 37 H 0.158 0.842 38 H 0.116 0.884 39 H 0.274 0.726 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 -3.304 27.500 29.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 O -0.374 6.374 4 C -0.150 4.150 5 C -0.024 4.024 6 N -0.351 5.351 7 C 0.331 3.669 8 O -0.452 6.452 9 C -0.250 4.250 10 C -0.011 4.011 11 C -0.158 4.158 12 C -0.064 4.064 13 C -0.238 4.238 14 C 0.075 3.925 15 O -0.134 6.134 16 C -0.493 4.493 17 H 0.112 0.888 18 C -0.218 4.218 19 N -0.556 5.556 20 Si 0.838 3.162 21 H -0.183 1.183 22 H -0.190 1.190 23 H -0.183 1.183 24 C -0.274 4.274 25 C -0.013 4.013 26 C -0.049 4.049 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.238 0.762 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.186 0.814 36 H 0.192 0.808 37 H 0.175 0.825 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.069 0.931 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.448 -3.585 26.970 28.489 hybrid contribution -0.672 1.029 -1.553 1.980 sum -9.120 -2.556 25.418 27.125 Atomic orbital electron populations 1.22242 0.92317 1.04171 1.03422 1.22398 0.93797 0.82168 0.94130 1.86479 1.78699 1.24319 1.47917 1.22781 0.95212 0.99947 0.97085 1.22270 0.99319 1.02693 0.78143 1.48470 1.11870 1.66608 1.08148 1.18853 0.85402 0.77045 0.85592 1.91001 1.83515 1.54532 1.16108 1.23033 0.91222 1.09076 1.01626 1.22630 0.98276 0.90454 0.89757 1.18875 1.07286 0.95030 0.94616 1.21115 0.95919 0.99319 0.89999 1.20322 1.10823 0.94394 0.98219 1.20035 0.93885 0.93981 0.84584 1.83864 1.69694 1.37567 1.22288 1.21796 1.38984 0.94269 0.94252 0.88812 1.26612 0.97621 1.04159 0.93445 1.70159 1.46055 1.39657 0.99697 0.84597 0.78279 0.74726 0.78619 1.18309 1.19010 1.18251 1.20978 1.11410 1.01218 0.93753 1.20696 0.91485 0.95339 0.93797 1.23014 0.84314 0.99178 0.98385 0.89851 0.90285 0.92016 0.76203 0.88066 0.86918 0.88909 0.90877 0.81410 0.80824 0.82474 0.86598 0.91643 0.87460 0.87593 0.93058 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.01 71.98 0.65 -1.04 16 2 C 0.12 1.74 1.32 -9.40 -0.01 1.73 16 3 O -0.57 -10.41 13.18 -148.98 -1.96 -12.37 16 4 C -0.11 -1.19 6.15 31.79 0.20 -1.00 16 5 C 0.10 1.36 6.06 86.73 0.53 1.88 16 6 N -0.62 -14.42 3.33 -816.95 -2.72 -17.14 16 7 C 0.54 16.34 6.90 86.32 0.60 16.94 16 8 O -0.57 -23.83 12.60 -4.40 -0.06 -23.88 16 9 C -0.23 -5.18 9.43 23.61 0.22 -4.95 16 10 C 0.01 0.20 9.79 23.82 0.23 0.43 16 11 C -0.16 -5.69 4.42 -20.13 -0.09 -5.78 16 12 C -0.05 -1.71 9.78 22.55 0.22 -1.49 16 13 C -0.22 -10.31 9.97 22.34 0.22 -10.09 16 14 C 0.13 7.00 6.66 22.72 0.15 7.15 16 15 O -0.23 -14.80 9.74 -20.22 -0.20 -15.00 16 16 C -0.42 -26.19 9.48 67.93 0.64 -25.55 16 17 H 0.09 5.57 5.18 -2.91 -0.02 5.55 16 18 C -0.02 -1.24 5.49 84.86 0.47 -0.77 16 19 N -0.92 -58.58 13.67 21.62 0.30 -58.28 16 20 Si 1.02 45.26 29.55 68.60 2.03 47.29 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 C -0.25 -12.98 9.14 22.34 0.20 -12.78 16 25 C 0.01 0.22 6.69 22.55 0.15 0.37 16 26 C 0.07 1.63 6.10 86.86 0.53 2.16 16 27 H 0.08 0.66 8.11 -2.38 -0.02 0.64 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.39 5.57 9.11 -74.05 -0.67 4.89 16 31 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.11 0.68 8.01 -2.38 -0.02 0.67 16 33 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.17 2.25 7.39 -2.91 -0.02 2.23 16 36 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 38 H 0.12 5.30 8.06 -2.91 -0.02 5.28 16 39 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 40 H 0.11 5.65 5.62 -2.91 -0.02 5.63 16 41 H 0.11 4.21 7.28 -2.91 -0.02 4.19 16 42 H 0.05 1.42 8.04 -2.38 -0.02 1.40 16 43 H 0.08 1.60 8.04 -2.39 -0.02 1.58 16 Total: -1.00 -87.31 359.78 2.66 -84.65 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.36 Total: 27.52 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 4.91 Total: -32.79 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -2.42 Total: -75.42 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -2.22 Total: -51.25 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -87.31 2.66 -84.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255915430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.557 kcal (2) G-P(sol) polarization free energy of solvation -87.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds