Wall clock time and date at job start Tue Mar 31 2020 11:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86806 * 119.99862 * 2 1 4 4 H 1.48503 * 109.47173 * 239.99936 * 3 2 1 5 5 H 1.48499 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46747 * 120.00039 * 3 2 1 7 7 C 1.39932 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99994 * 197.88159 * 7 2 1 9 9 C 1.41438 * 120.00238 * 17.87450 * 7 2 1 10 10 C 1.40779 * 120.18083 * 204.44296 * 9 7 2 11 11 C 1.37710 * 120.04260 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.41101 * 359.96442 * 11 10 9 13 13 C 1.39881 * 120.35336 * 0.03934 * 12 11 10 14 14 C 1.47887 * 120.01938 * 180.25370 * 13 12 11 15 15 O 1.21548 * 120.00094 * 179.72667 * 14 13 12 16 16 N 1.34778 * 120.00295 * 359.72289 * 14 13 12 17 17 C 1.46495 * 120.00216 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.47016 * 275.00383 * 17 16 14 19 19 C 1.53000 * 109.47102 * 299.99656 * 18 17 16 20 20 C 1.53000 * 109.47393 * 300.00352 * 19 18 17 21 21 C 1.50700 * 109.47322 * 179.97438 * 20 19 18 22 22 O 1.20826 * 119.99712 * 239.99584 * 21 20 19 23 23 O 1.34222 * 119.99986 * 59.99679 * 21 20 19 24 24 C 1.53007 * 109.47284 * 59.99760 * 20 19 18 25 25 C 1.52999 * 109.47404 * 155.00276 * 17 16 14 26 26 C 1.39030 * 119.95341 * 359.97438 * 13 12 11 27 27 H 0.97005 * 119.99949 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.98071 * 0.03289 * 10 9 7 29 29 H 1.07999 * 119.79493 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.82041 * 180.02562 * 12 11 10 31 31 H 0.97003 * 119.99658 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47187 * 35.00033 * 17 16 14 33 33 H 1.08996 * 109.47107 * 59.99913 * 18 17 16 34 34 H 1.09005 * 109.47106 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47154 * 179.97438 * 19 18 17 36 36 H 1.09001 * 109.47074 * 60.00123 * 19 18 17 37 37 H 1.09001 * 109.46824 * 299.99924 * 20 19 18 38 38 H 0.96699 * 117.00039 * 179.97438 * 23 21 20 39 39 H 1.08996 * 109.47107 * 180.02562 * 24 20 19 40 40 H 1.08996 * 109.47024 * 59.99569 * 24 20 19 41 41 H 1.09001 * 109.47195 * 180.02562 * 25 17 16 42 42 H 1.09001 * 109.47099 * 299.99992 * 25 17 16 43 43 H 1.08004 * 120.20088 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2867 9 6 1.3520 -2.4070 -0.3770 10 6 1.8262 -3.6499 0.0836 11 6 1.1857 -4.8119 -0.2852 12 6 0.0740 -4.7681 -1.1080 13 6 -0.4115 -3.5424 -1.5755 14 6 -1.6035 -3.5038 -2.4500 15 8 -2.0281 -2.4382 -2.8520 16 7 -2.2191 -4.6502 -2.8014 17 6 -3.3995 -4.6119 -3.6681 18 6 -4.6490 -4.3733 -2.8178 19 6 -4.7988 -5.5075 -1.8019 20 6 -4.9319 -6.8403 -2.5413 21 6 -5.0789 -7.9575 -1.5407 22 8 -4.2677 -8.8525 -1.5110 23 8 -6.1108 -7.9583 -0.6824 24 6 -3.6824 -7.0789 -3.3916 25 6 -3.5327 -5.9447 -4.4076 26 6 0.2238 -2.3602 -1.2128 27 1 -0.4850 0.8401 -0.0004 28 1 2.6929 -3.6922 0.7267 29 1 1.5532 -5.7633 0.0702 30 1 -0.4212 -5.6852 -1.3909 31 1 -1.8804 -5.5006 -2.4803 32 1 -3.2928 -3.8039 -4.3918 33 1 -4.5541 -3.4238 -2.2910 34 1 -5.5274 -4.3453 -3.4627 35 1 -5.6887 -5.3373 -1.1959 36 1 -3.9205 -5.5360 -1.1570 37 1 -5.8102 -6.8118 -3.1862 38 1 -6.1631 -8.6960 -0.0594 39 1 -3.7775 -8.0282 -3.9187 40 1 -2.8042 -7.1073 -2.7467 41 1 -4.4108 -5.9160 -5.0528 42 1 -2.6426 -6.1147 -5.0133 43 1 -0.1474 -1.4116 -1.5718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262653133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:59 Heat of formation + Delta-G solvation = -131.865615 kcal Electronic energy + Delta-G solvation = -26460.977411 eV Core-core repulsion = 22662.506475 eV Total energy + Delta-G solvation = -3798.470937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86293 -39.61265 -37.95900 -36.79109 -36.29305 -33.82108 -33.40935 -31.00599 -30.83138 -29.50900 -29.25818 -25.35252 -24.61511 -22.87867 -22.80606 -21.18183 -20.89096 -19.92001 -18.96760 -18.22291 -17.81199 -16.97311 -16.46145 -15.87630 -15.46178 -15.13376 -15.04226 -14.69991 -14.25945 -13.97416 -13.77242 -13.58548 -13.20741 -12.88035 -12.79003 -12.55148 -12.49039 -12.40753 -12.25765 -11.73157 -11.66248 -11.35174 -11.15735 -11.10421 -11.07937 -10.77087 -10.73845 -10.52802 -10.47640 -10.25472 -10.01847 -9.68969 -9.20542 -8.99817 -8.64114 -7.62575 -7.51603 -6.79994 -4.41208 1.99748 2.21970 2.81547 2.82647 3.07528 3.09164 3.16993 3.69881 3.87047 3.92276 4.35391 4.48553 4.64171 4.65571 4.89504 4.98119 5.13281 5.25490 5.28148 5.30260 5.48483 5.61182 5.63276 5.71528 5.82163 5.95007 5.99558 6.06825 6.10856 6.17590 6.25433 6.28487 6.30677 6.72550 6.91633 6.99530 7.03320 7.21749 7.38788 7.67821 7.70802 7.76919 7.93125 8.10586 8.19872 8.50873 8.80477 8.83904 8.97281 10.14630 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.003172 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.526505 B = 8825.338292 C = 9310.017542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.129 4.129 14 C 0.565 3.435 15 O -0.546 6.546 16 N -0.731 5.731 17 C 0.143 3.857 18 C -0.129 4.129 19 C -0.110 4.110 20 C -0.078 4.078 21 C 0.482 3.518 22 O -0.515 6.515 23 O -0.516 6.516 24 C -0.107 4.107 25 C -0.125 4.125 26 C -0.093 4.093 27 H 0.285 0.715 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.397 0.603 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.408 0.592 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.268 -11.375 -5.299 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.132 4.132 14 C 0.356 3.644 15 O -0.424 6.424 16 N -0.386 5.386 17 C 0.038 3.962 18 C -0.167 4.167 19 C -0.148 4.148 20 C -0.097 4.097 21 C 0.324 3.676 22 O -0.403 6.403 23 O -0.328 6.328 24 C -0.145 4.145 25 C -0.163 4.163 26 C -0.113 4.113 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.267 0.733 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.545 -10.353 -5.850 16.574 hybrid contribution 0.403 -0.325 0.768 0.926 sum -11.142 -10.678 -5.083 16.248 Atomic orbital electron populations 1.69786 1.07564 1.29848 1.33527 1.25956 0.94765 1.01508 0.92296 0.86330 0.80122 0.80119 0.79975 1.18720 1.20217 1.18986 1.19562 0.98222 0.91109 1.40096 0.90136 1.17592 0.91207 0.92406 0.89147 1.21096 1.03498 0.92769 1.05811 1.20437 0.96049 0.96729 0.98374 1.20336 1.01353 0.94603 1.07537 1.19491 0.96606 0.95233 1.01860 1.18839 0.83166 0.82963 0.79465 1.90686 1.66536 1.29827 1.55370 1.46097 1.30313 1.09642 1.52528 1.20851 0.85228 0.97771 0.92351 1.21936 0.97780 0.98928 0.98082 1.21514 1.03410 0.91603 0.98272 1.21132 1.01621 0.92264 0.94645 1.23634 0.77511 0.86427 0.80001 1.90726 1.42201 1.37664 1.69663 1.84546 1.48549 1.52776 1.46917 1.21471 0.96385 0.99088 0.97507 1.21838 1.03230 0.93559 0.97646 1.21631 0.96485 0.96463 0.96706 0.90403 0.88656 0.88952 0.89396 0.76591 0.89245 0.90306 0.90996 0.90572 0.90854 0.87282 0.73317 0.90657 0.90800 0.90272 0.90438 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.66 10.96 55.55 0.61 -20.05 16 2 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.12 9.05 -37.73 -0.34 -12.46 16 8 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 9 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 10 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 11 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 12 C -0.22 -4.61 9.55 -38.92 -0.37 -4.99 16 13 C -0.13 -3.02 5.87 -105.04 -0.62 -3.63 16 14 C 0.56 11.99 7.74 -12.31 -0.10 11.89 16 15 O -0.55 -13.22 16.00 5.32 0.09 -13.13 16 16 N -0.73 -11.52 4.18 -54.74 -0.23 -11.75 16 17 C 0.14 1.81 2.78 -67.93 -0.19 1.62 16 18 C -0.13 -1.49 5.60 -26.73 -0.15 -1.64 16 19 C -0.11 -1.18 4.98 -26.73 -0.13 -1.32 16 20 C -0.08 -0.71 2.63 -91.77 -0.24 -0.95 16 21 C 0.48 5.07 7.63 36.01 0.27 5.34 16 22 O -0.51 -6.95 16.74 -18.75 -0.31 -7.27 16 23 O -0.52 -4.30 13.33 -39.24 -0.52 -4.82 16 24 C -0.11 -1.02 4.32 -26.72 -0.12 -1.13 16 25 C -0.12 -1.15 5.61 -26.73 -0.15 -1.30 16 26 C -0.09 -2.46 8.24 -38.44 -0.32 -2.78 16 27 H 0.28 6.92 8.30 -40.82 -0.34 6.59 16 28 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 29 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.09 1.57 6.38 -52.49 -0.33 1.23 16 31 H 0.40 5.74 4.88 -40.82 -0.20 5.54 16 32 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 36 H 0.07 0.94 7.60 -51.93 -0.39 0.55 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.41 1.78 9.10 45.56 0.41 2.19 16 39 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.07 0.82 6.46 -51.93 -0.34 0.48 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.13 3.83 5.74 -52.48 -0.30 3.53 16 LS Contribution 353.59 15.07 5.33 5.33 Total: -1.00 -31.80 353.59 -8.88 -40.68 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -4.90 Total: 12.78 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -3.91 Total: -15.49 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.38 Total: -31.81 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.75 Total: -25.22 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.80 -8.88 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262653133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.188 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds