Wall clock time and date at job start Tue Mar 31 2020 11:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86806 * 119.99862 * 2 1 4 4 H 1.48503 * 109.47173 * 239.99936 * 3 2 1 5 5 H 1.48499 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46747 * 120.00039 * 3 2 1 7 7 C 1.39932 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99994 * 197.88159 * 7 2 1 9 9 C 1.41438 * 120.00238 * 17.87450 * 7 2 1 10 10 C 1.40779 * 120.18083 * 204.44296 * 9 7 2 11 11 C 1.37710 * 120.04260 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.41101 * 359.96442 * 11 10 9 13 13 C 1.39881 * 120.35336 * 0.03934 * 12 11 10 14 14 C 1.47887 * 120.01938 * 180.25370 * 13 12 11 15 15 O 1.21548 * 120.00094 * 179.72667 * 14 13 12 16 16 N 1.34778 * 120.00295 * 359.72289 * 14 13 12 17 17 C 1.46495 * 120.00216 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.47016 * 275.00383 * 17 16 14 19 19 C 1.53000 * 109.47102 * 299.99656 * 18 17 16 20 20 C 1.53000 * 109.47393 * 300.00352 * 19 18 17 21 21 C 1.50700 * 109.47322 * 179.97438 * 20 19 18 22 22 O 1.20826 * 119.99712 * 239.99584 * 21 20 19 23 23 O 1.34222 * 119.99986 * 59.99679 * 21 20 19 24 24 C 1.53007 * 109.47284 * 59.99760 * 20 19 18 25 25 C 1.52999 * 109.47404 * 155.00276 * 17 16 14 26 26 C 1.39030 * 119.95341 * 359.97438 * 13 12 11 27 27 H 0.97005 * 119.99949 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.98071 * 0.03289 * 10 9 7 29 29 H 1.07999 * 119.79493 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.82041 * 180.02562 * 12 11 10 31 31 H 0.97003 * 119.99658 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47187 * 35.00033 * 17 16 14 33 33 H 1.08996 * 109.47107 * 59.99913 * 18 17 16 34 34 H 1.09005 * 109.47106 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47154 * 179.97438 * 19 18 17 36 36 H 1.09001 * 109.47074 * 60.00123 * 19 18 17 37 37 H 1.09001 * 109.46824 * 299.99924 * 20 19 18 38 38 H 0.96699 * 117.00039 * 179.97438 * 23 21 20 39 39 H 1.08996 * 109.47107 * 180.02562 * 24 20 19 40 40 H 1.08996 * 109.47024 * 59.99569 * 24 20 19 41 41 H 1.09001 * 109.47195 * 180.02562 * 25 17 16 42 42 H 1.09001 * 109.47099 * 299.99992 * 25 17 16 43 43 H 1.08004 * 120.20088 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2867 9 6 1.3520 -2.4070 -0.3770 10 6 1.8262 -3.6499 0.0836 11 6 1.1857 -4.8119 -0.2852 12 6 0.0740 -4.7681 -1.1080 13 6 -0.4115 -3.5424 -1.5755 14 6 -1.6035 -3.5038 -2.4500 15 8 -2.0281 -2.4382 -2.8520 16 7 -2.2191 -4.6502 -2.8014 17 6 -3.3995 -4.6119 -3.6681 18 6 -4.6490 -4.3733 -2.8178 19 6 -4.7988 -5.5075 -1.8019 20 6 -4.9319 -6.8403 -2.5413 21 6 -5.0789 -7.9575 -1.5407 22 8 -4.2677 -8.8525 -1.5110 23 8 -6.1108 -7.9583 -0.6824 24 6 -3.6824 -7.0789 -3.3916 25 6 -3.5327 -5.9447 -4.4076 26 6 0.2238 -2.3602 -1.2128 27 1 -0.4850 0.8401 -0.0004 28 1 2.6929 -3.6922 0.7267 29 1 1.5532 -5.7633 0.0702 30 1 -0.4212 -5.6852 -1.3909 31 1 -1.8804 -5.5006 -2.4803 32 1 -3.2928 -3.8039 -4.3918 33 1 -4.5541 -3.4238 -2.2910 34 1 -5.5274 -4.3453 -3.4627 35 1 -5.6887 -5.3373 -1.1959 36 1 -3.9205 -5.5360 -1.1570 37 1 -5.8102 -6.8118 -3.1862 38 1 -6.1631 -8.6960 -0.0594 39 1 -3.7775 -8.0282 -3.9187 40 1 -2.8042 -7.1073 -2.7467 41 1 -4.4108 -5.9160 -5.0528 42 1 -2.6426 -6.1147 -5.0133 43 1 -0.1474 -1.4116 -1.5718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262653133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:58 Heat of formation + Delta-G solvation = -151.877452 kcal Electronic energy + Delta-G solvation = -26461.845190 eV Core-core repulsion = 22662.506475 eV Total energy + Delta-G solvation = -3799.338715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76473 -40.94030 -39.33547 -38.40529 -37.08544 -35.64712 -34.75330 -32.36388 -31.82746 -31.31283 -30.69362 -27.22481 -25.61176 -24.35857 -23.70723 -22.82706 -21.98168 -21.41703 -20.10342 -19.57223 -18.98737 -18.02023 -17.76570 -17.10797 -16.96512 -16.56639 -16.30627 -16.20930 -15.59780 -15.25008 -15.09029 -14.83065 -14.62985 -14.43292 -14.26309 -13.82468 -13.48592 -13.44558 -13.27716 -13.17866 -12.93288 -12.80721 -12.54611 -12.51674 -12.22421 -12.14702 -12.02001 -11.88257 -11.59554 -11.52511 -11.37820 -11.14681 -11.06750 -10.73244 -10.04646 -9.47474 -9.39644 -8.67125 -6.39008 0.38870 1.00330 1.21121 1.36151 1.47618 1.50622 2.12084 2.14803 2.19447 2.32969 2.78858 3.57363 3.66942 3.69676 3.84676 4.00242 4.08741 4.12194 4.35519 4.40157 4.45707 4.48337 4.53047 4.55986 4.69633 4.84609 4.88026 5.02953 5.08044 5.08293 5.14612 5.18142 5.20210 5.29967 5.31885 5.34547 5.50997 5.62687 5.65900 5.85713 5.92189 6.04169 6.27686 6.51443 6.69721 6.87098 6.93681 7.00985 7.36010 8.29449 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.003172 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.526505 B = 8825.338292 C = 9310.017542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.031 3.969 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.499 4.499 8 H 0.084 0.916 9 C 0.069 3.931 10 C -0.219 4.219 11 C -0.096 4.096 12 C -0.201 4.201 13 C -0.139 4.139 14 C 0.562 3.438 15 O -0.586 6.586 16 N -0.708 5.708 17 C 0.135 3.865 18 C -0.124 4.124 19 C -0.104 4.104 20 C -0.072 4.072 21 C 0.485 3.515 22 O -0.549 6.549 23 O -0.513 6.513 24 C -0.105 4.105 25 C -0.112 4.112 26 C -0.130 4.130 27 H 0.287 0.713 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.406 0.594 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.142 0.858 38 H 0.425 0.575 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 -13.760 -6.014 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.528 4.528 8 H 0.102 0.898 9 C 0.066 3.934 10 C -0.239 4.239 11 C -0.114 4.114 12 C -0.221 4.221 13 C -0.142 4.142 14 C 0.351 3.649 15 O -0.467 6.467 16 N -0.361 5.361 17 C 0.031 3.969 18 C -0.162 4.162 19 C -0.142 4.142 20 C -0.091 4.091 21 C 0.329 3.671 22 O -0.440 6.440 23 O -0.326 6.326 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.151 4.151 27 H 0.098 0.902 28 H 0.126 0.874 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.245 0.755 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.160 0.840 38 H 0.287 0.713 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.598 -12.803 -6.552 19.120 hybrid contribution 0.615 0.200 0.996 1.188 sum -11.983 -12.603 -5.556 18.256 Atomic orbital electron populations 1.69888 1.09238 1.30709 1.35044 1.26853 0.95410 1.04925 0.91257 0.85238 0.78721 0.75438 0.80264 1.18489 1.19546 1.17677 1.19855 0.98631 0.92284 1.42059 0.89812 1.17940 0.91795 0.93820 0.89809 1.21387 1.03962 0.92781 1.05735 1.20897 0.95432 0.97672 0.97417 1.20786 1.00673 0.95047 1.05583 1.19845 0.97186 0.95293 1.01903 1.18652 0.83001 0.83851 0.79362 1.90661 1.67539 1.31598 1.56927 1.45959 1.30434 1.08164 1.51560 1.21178 0.84129 0.99723 0.91905 1.21883 0.98517 0.97454 0.98374 1.21415 1.02641 0.92286 0.97869 1.21147 1.02867 0.90515 0.94566 1.23819 0.77172 0.86079 0.79994 1.90720 1.43466 1.39123 1.70677 1.84510 1.47540 1.53675 1.46905 1.21458 0.95827 0.99687 0.97338 1.21800 1.05026 0.90727 0.97382 1.21442 0.98255 0.96438 0.98966 0.90248 0.87417 0.84721 0.85377 0.75541 0.90936 0.94041 0.87518 0.89687 0.93483 0.84022 0.71326 0.89358 0.92619 0.86928 0.90112 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.15 10.96 21.82 0.24 -45.91 16 2 C 0.03 1.62 5.14 85.25 0.44 2.06 16 3 Si 0.98 39.80 29.60 68.60 2.03 41.83 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 7 C -0.50 -27.48 9.05 23.47 0.21 -27.27 16 8 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 9 C 0.07 3.78 5.57 -21.32 -0.12 3.67 16 10 C -0.22 -10.46 9.78 22.77 0.22 -10.24 16 11 C -0.10 -3.95 10.01 22.18 0.22 -3.73 16 12 C -0.20 -8.19 9.55 22.70 0.22 -7.98 16 13 C -0.14 -6.67 5.87 -20.13 -0.12 -6.79 16 14 C 0.56 24.50 7.74 86.80 0.67 25.17 16 15 O -0.59 -29.92 16.00 -3.87 -0.06 -29.98 16 16 N -0.71 -21.86 4.18 -445.37 -1.86 -23.72 16 17 C 0.13 3.21 2.78 44.99 0.13 3.33 16 18 C -0.12 -2.69 5.60 30.60 0.17 -2.52 16 19 C -0.10 -2.03 4.98 30.59 0.15 -1.87 16 20 C -0.07 -1.08 2.63 -11.54 -0.03 -1.11 16 21 C 0.49 8.87 7.63 71.24 0.54 9.42 16 22 O -0.55 -13.65 16.74 21.97 0.37 -13.28 16 23 O -0.51 -7.08 13.33 -51.34 -0.68 -7.76 16 24 C -0.11 -1.65 4.32 30.60 0.13 -1.52 16 25 C -0.11 -1.66 5.61 30.60 0.17 -1.49 16 26 C -0.13 -7.33 8.24 23.01 0.19 -7.14 16 27 H 0.29 14.83 8.30 -92.70 -0.77 14.06 16 28 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 29 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.13 4.13 6.38 -2.91 -0.02 4.11 16 31 H 0.41 11.02 4.88 -92.71 -0.45 10.56 16 32 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 36 H 0.05 1.16 7.60 -2.39 -0.02 1.14 16 37 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.43 2.61 9.10 -74.06 -0.67 1.94 16 39 H 0.09 1.23 8.10 -2.39 -0.02 1.21 16 40 H 0.06 1.08 6.46 -2.39 -0.02 1.07 16 41 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.10 6.24 5.74 -2.91 -0.02 6.22 16 Total: -1.00 -74.93 353.59 3.16 -71.77 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.07 Total: 35.09 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 3.20 Total: -28.02 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -1.62 Total: -69.64 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -0.38 Total: -51.03 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -74.93 3.16 -71.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262653133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.107 kcal (2) G-P(sol) polarization free energy of solvation -74.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds