Wall clock time and date at job start Tue Mar 31 2020 11:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48496 * 109.47268 * 240.00256 * 3 2 1 5 5 H 1.48497 * 109.47264 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47180 * 119.99944 * 3 2 1 7 7 C 1.39930 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99851 * 190.45995 * 7 2 1 9 9 C 1.41439 * 120.00210 * 10.45744 * 7 2 1 10 10 C 1.40788 * 120.17674 * 208.02374 * 9 7 2 11 11 C 1.37708 * 120.03579 * 180.27448 * 10 9 7 12 12 C 1.38379 * 120.41483 * 359.49218 * 11 10 9 13 13 C 1.39875 * 120.35482 * 0.25855 * 12 11 10 14 14 C 1.47887 * 120.02655 * 180.02562 * 13 12 11 15 15 O 1.21539 * 120.00369 * 180.02562 * 14 13 12 16 16 N 1.34780 * 119.99648 * 0.02562 * 14 13 12 17 17 C 1.46503 * 120.00296 * 175.01763 * 16 14 13 18 18 C 1.53000 * 110.43318 * 299.91753 * 17 16 14 19 19 C 1.50704 * 109.46952 * 305.06902 * 18 17 16 20 20 O 1.20830 * 119.99678 * 354.57332 * 19 18 17 21 21 O 1.34225 * 120.00086 * 174.58106 * 19 18 17 22 22 C 1.54887 * 110.49041 * 177.22770 * 17 16 14 23 23 C 1.54887 * 102.74839 * 279.26776 * 22 17 16 24 24 C 1.54270 * 104.19749 * 322.05303 * 23 22 17 25 25 C 1.53878 * 106.59435 * 23.61527 * 24 23 22 26 26 C 1.39031 * 119.95411 * 0.02562 * 13 12 11 27 27 H 0.97002 * 119.99414 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.98152 * 0.04620 * 10 9 7 29 29 H 1.08006 * 119.79212 * 179.77143 * 11 10 9 30 30 H 1.07998 * 119.81887 * 180.23414 * 12 11 10 31 31 H 0.97005 * 120.00316 * 355.01338 * 16 14 13 32 32 H 1.09001 * 109.47170 * 65.06180 * 18 17 16 33 33 H 1.08992 * 109.47165 * 185.06900 * 18 17 16 34 34 H 0.96699 * 116.99774 * 179.97438 * 21 19 18 35 35 H 1.08998 * 110.75082 * 37.57851 * 22 17 16 36 36 H 1.08997 * 110.75283 * 160.94962 * 22 17 16 37 37 H 1.09007 * 110.48170 * 203.38269 * 23 22 17 38 38 H 1.08996 * 110.48824 * 80.73909 * 23 22 17 39 39 H 1.08992 * 110.03221 * 264.33124 * 24 23 22 40 40 H 1.08996 * 110.03291 * 142.89798 * 24 23 22 41 41 H 1.09002 * 110.02862 * 240.71531 * 25 24 23 42 42 H 1.08998 * 110.03091 * 119.28286 * 25 24 23 43 43 H 1.07993 * 120.20809 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2126 7 6 2.0079 -1.2118 -0.0005 8 1 3.0745 -1.2197 0.1693 9 6 1.3183 -2.4265 -0.2234 10 6 1.8062 -3.6281 0.3247 11 6 1.1356 -4.8099 0.1011 12 6 -0.0249 -4.8252 -0.6525 13 6 -0.5274 -3.6405 -1.2006 14 6 -1.7686 -3.6651 -2.0043 15 8 -2.2046 -2.6355 -2.4808 16 7 -2.4162 -4.8293 -2.2084 17 6 -3.7019 -4.8391 -2.9108 18 6 -4.7290 -3.9923 -2.1567 19 6 -4.8311 -4.4764 -0.7331 20 8 -4.2267 -5.4633 -0.3859 21 8 -5.5936 -3.8112 0.1489 22 6 -4.2139 -6.2906 -3.0842 23 6 -3.4152 -6.7903 -4.3135 24 6 -3.3499 -5.5635 -5.2465 25 6 -3.5321 -4.3229 -4.3546 26 6 0.1407 -2.4397 -0.9893 27 1 -0.4849 0.8401 0.0004 28 1 2.7088 -3.6235 0.9176 29 1 1.5153 -5.7299 0.5204 30 1 -0.5451 -5.7569 -0.8186 31 1 -2.0311 -5.6609 -1.8903 32 1 -4.4149 -2.9485 -2.1638 33 1 -5.7008 -4.0827 -2.6417 34 1 -5.6280 -4.1600 1.0501 35 1 -3.9823 -6.8896 -2.2035 36 1 -5.2845 -6.3006 -3.2889 37 1 -3.9396 -7.6125 -4.8006 38 1 -2.4124 -7.0983 -4.0174 39 1 -4.1499 -5.6132 -5.9851 40 1 -2.3819 -5.5253 -5.7460 41 1 -4.4206 -3.7705 -4.6605 42 1 -2.6525 -3.6827 -4.4213 43 1 -0.2434 -1.5226 -1.4109 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262823342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:56 Heat of formation + Delta-G solvation = -121.635864 kcal Electronic energy + Delta-G solvation = -27248.821600 eV Core-core repulsion = 23450.794259 eV Total energy + Delta-G solvation = -3798.027341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72651 -39.31190 -37.85835 -36.65322 -35.90007 -33.74397 -33.07334 -31.25424 -29.69287 -29.35944 -28.76396 -26.23960 -25.24202 -22.78958 -21.74327 -20.94571 -20.64477 -19.84756 -18.85855 -17.87729 -17.69944 -16.68457 -16.19115 -15.73880 -15.35223 -15.13988 -15.03931 -14.64126 -14.44062 -13.96907 -13.76970 -13.22423 -12.98739 -12.88311 -12.74921 -12.47554 -12.28065 -11.77118 -11.58824 -11.44409 -11.35740 -11.18735 -11.11231 -11.06611 -11.03589 -10.84223 -10.71568 -10.47159 -10.44459 -10.26494 -9.93258 -9.67935 -9.23339 -8.88065 -8.58945 -7.59697 -7.44538 -6.70907 -4.40751 2.22690 2.39198 2.85186 3.08894 3.11055 3.15744 3.17237 3.69334 3.87181 3.95124 4.46506 4.53652 4.72068 4.75583 5.09626 5.23459 5.38572 5.40586 5.49194 5.57051 5.62399 5.72159 5.77641 5.88330 5.91367 5.91953 6.02962 6.11566 6.17474 6.23919 6.32643 6.46342 6.64728 6.73436 6.98195 7.03135 7.06917 7.26104 7.41701 7.73294 7.80132 7.96327 8.04003 8.16750 8.23899 8.54261 8.84484 8.86462 8.99277 10.22222 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.003989 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.562021 B = 7018.462428 C = 7227.789511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.071 3.929 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.079 0.921 9 C 0.096 3.904 10 C -0.206 4.206 11 C -0.103 4.103 12 C -0.207 4.207 13 C -0.132 4.132 14 C 0.565 3.435 15 O -0.547 6.547 16 N -0.714 5.714 17 C 0.191 3.809 18 C -0.126 4.126 19 C 0.482 3.518 20 O -0.507 6.507 21 O -0.520 6.520 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.087 4.087 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.403 0.597 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.407 0.593 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.315 -9.158 -5.716 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.094 3.906 10 C -0.226 4.226 11 C -0.121 4.121 12 C -0.227 4.227 13 C -0.135 4.135 14 C 0.356 3.644 15 O -0.426 6.426 16 N -0.368 5.368 17 C 0.104 3.896 18 C -0.164 4.164 19 C 0.325 3.675 20 O -0.394 6.394 21 O -0.332 6.332 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.166 4.166 26 C -0.107 4.107 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.239 0.761 32 H 0.142 0.858 33 H 0.126 0.874 34 H 0.265 0.735 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.663 -8.366 -6.350 14.967 hybrid contribution 0.466 0.124 0.990 1.102 sum -10.197 -8.241 -5.360 14.164 Atomic orbital electron populations 1.69753 1.07371 1.29507 1.35286 1.25929 0.94874 1.01368 0.92470 0.86286 0.79945 0.80148 0.79854 1.18837 1.20273 1.19060 1.19535 0.95870 0.90311 1.43437 0.90317 1.17617 0.91641 0.92452 0.88932 1.21161 1.02546 0.93340 1.05556 1.20449 0.95775 0.96685 0.99234 1.20415 0.99627 0.95373 1.07318 1.19527 0.95735 0.95532 1.02755 1.18822 0.84145 0.82472 0.78968 1.90647 1.68248 1.33048 1.50625 1.45911 1.21062 1.10221 1.59565 1.20721 0.83199 0.94640 0.91053 1.21892 1.01581 1.04741 0.88198 1.23393 0.74836 0.80720 0.88599 1.90666 1.42804 1.26202 1.79757 1.84539 1.65491 1.58039 1.25136 1.22846 0.99833 0.94509 0.99155 1.22367 1.00472 0.97528 0.95782 1.22123 1.01654 0.94389 0.97818 1.22515 1.03740 0.97921 0.92452 1.21741 0.95851 0.95994 0.97139 0.90582 0.88639 0.88941 0.89156 0.76092 0.85826 0.87364 0.73495 0.89642 0.90544 0.91637 0.91397 0.91962 0.91824 0.91101 0.89527 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.20 10.76 55.55 0.60 -20.61 16 2 C 0.07 1.81 5.26 -17.35 -0.09 1.72 16 3 Si 0.91 19.00 29.57 -169.99 -5.03 13.98 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.26 9.07 -37.73 -0.34 -12.61 16 8 H 0.08 1.98 7.87 -52.48 -0.41 1.57 16 9 C 0.10 2.57 5.56 -106.87 -0.59 1.97 16 10 C -0.21 -4.98 9.78 -38.81 -0.38 -5.36 16 11 C -0.10 -2.26 10.01 -39.72 -0.40 -2.66 16 12 C -0.21 -4.51 9.55 -38.92 -0.37 -4.88 16 13 C -0.13 -3.15 5.87 -105.04 -0.62 -3.77 16 14 C 0.56 12.06 7.02 -12.31 -0.09 11.98 16 15 O -0.55 -12.74 13.21 5.33 0.07 -12.67 16 16 N -0.71 -11.98 3.70 -46.99 -0.17 -12.15 16 17 C 0.19 2.61 0.28 -130.16 -0.04 2.58 16 18 C -0.13 -1.71 4.50 -27.88 -0.13 -1.83 16 19 C 0.48 7.09 7.94 36.01 0.29 7.38 16 20 O -0.51 -8.31 14.38 -18.75 -0.27 -8.58 16 21 O -0.52 -6.67 13.42 -39.24 -0.53 -7.19 16 22 C -0.13 -1.38 5.15 -24.74 -0.13 -1.51 16 23 C -0.12 -1.25 6.79 -25.07 -0.17 -1.42 16 24 C -0.12 -1.30 6.80 -25.61 -0.17 -1.48 16 25 C -0.13 -1.67 5.65 -25.61 -0.14 -1.81 16 26 C -0.09 -2.33 8.21 -38.44 -0.32 -2.65 16 27 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 28 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.09 1.70 6.39 -52.49 -0.34 1.36 16 31 H 0.40 6.47 6.52 -40.82 -0.27 6.20 16 32 H 0.12 2.00 6.57 -51.93 -0.34 1.66 16 33 H 0.11 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.41 3.56 9.10 45.56 0.41 3.97 16 35 H 0.09 1.03 6.94 -51.93 -0.36 0.67 16 36 H 0.08 0.71 8.01 -51.93 -0.42 0.30 16 37 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 42 H 0.09 1.42 6.37 -51.93 -0.33 1.09 16 43 H 0.14 3.98 5.71 -52.49 -0.30 3.68 16 LS Contribution 350.19 15.07 5.28 5.28 Total: -1.00 -30.92 350.19 -8.58 -39.50 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -4.85 Total: 16.80 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -3.69 Total: -14.35 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.42 Total: -32.76 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.73 Total: -28.45 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.92 -8.58 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262823342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.136 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds