Wall clock time and date at job start Tue Mar 31 2020 12:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.52569 * 2 1 4 4 O 1.20826 * 119.99577 * 120.08516 * 3 2 1 5 5 O 1.34225 * 120.00338 * 300.08554 * 3 2 1 6 6 C 1.53045 * 109.49584 * 120.08883 * 2 1 3 7 7 C 1.53034 * 109.53946 * 58.58443 * 6 2 1 8 8 C 1.53187 * 109.31637 * 61.36132 * 7 6 2 9 9 N 1.46919 * 108.77731 * 305.36387 * 8 7 6 10 10 C 1.34775 * 120.63219 * 233.62666 * 9 8 7 11 11 O 1.21590 * 119.99522 * 174.28281 * 10 9 8 12 12 C 1.47640 * 120.00151 * 354.28581 * 10 9 8 13 13 C 1.40009 * 119.89068 * 324.34351 * 12 10 9 14 14 C 1.36316 * 120.10518 * 179.76433 * 13 12 10 15 15 C 1.40895 * 119.89239 * 0.50766 * 14 13 12 16 16 C 1.41102 * 120.10544 * 179.71778 * 15 14 13 17 17 H 1.07997 * 120.00122 * 205.54847 * 16 15 14 18 18 C 1.40223 * 120.00013 * 25.55471 * 16 15 14 19 19 N 1.30647 * 120.00184 * 16.73562 * 18 16 15 20 20 Si 1.86804 * 120.00080 * 196.73595 * 18 16 15 21 21 H 1.48503 * 109.47059 * 90.00185 * 20 18 16 22 22 H 1.48504 * 109.47026 * 209.99771 * 20 18 16 23 23 H 1.48492 * 109.47320 * 329.99771 * 20 18 16 24 24 C 1.40890 * 119.78672 * 359.74977 * 15 14 13 25 25 C 1.36314 * 119.89738 * 359.97438 * 24 15 14 26 26 C 1.46933 * 118.73639 * 53.60947 * 9 8 7 27 27 H 1.09009 * 109.46613 * 299.91585 * 1 2 3 28 28 H 1.09003 * 109.47013 * 59.90881 * 1 2 3 29 29 H 1.08994 * 109.47399 * 179.97438 * 1 2 3 30 30 H 0.96702 * 117.00033 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.45536 * 298.55525 * 6 2 1 32 32 H 1.09006 * 109.45464 * 178.60119 * 6 2 1 33 33 H 1.09001 * 109.49367 * 181.31840 * 7 6 2 34 34 H 1.09002 * 109.49487 * 301.40973 * 7 6 2 35 35 H 1.09001 * 109.58363 * 65.15543 * 8 7 6 36 36 H 1.09002 * 109.58626 * 185.43480 * 8 7 6 37 37 H 1.08000 * 119.95329 * 0.02562 * 13 12 10 38 38 H 1.08004 * 120.05852 * 180.27933 * 14 13 12 39 39 H 0.97002 * 120.00152 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.04823 * 180.02562 * 24 15 14 41 41 H 1.07993 * 119.95014 * 179.97438 * 25 24 15 42 42 H 1.09004 * 109.58533 * 66.18035 * 26 9 8 43 43 H 1.09000 * 109.58443 * 186.60107 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.7300 1.8143 0.9055 5 8 1.7089 2.2477 -1.0058 6 6 2.0408 -0.7233 1.2483 7 6 1.5030 -2.1559 1.2658 8 6 2.0138 -2.9040 0.0305 9 7 1.6513 -2.1382 -1.1697 10 6 0.9738 -2.7217 -2.1781 11 8 0.5890 -2.0539 -3.1185 12 6 0.6987 -4.1718 -2.1407 13 6 1.6445 -5.0475 -1.5942 14 6 1.3931 -6.3867 -1.5531 15 6 0.1836 -6.8902 -2.0716 16 6 -0.0788 -8.2762 -2.0368 17 1 -0.7529 -8.7164 -2.7566 18 6 0.5356 -9.0820 -1.0675 19 7 1.0785 -8.5355 -0.0123 20 14 0.5780 -10.9368 -1.2851 21 1 1.8070 -11.3205 -2.0250 22 1 0.5779 -11.5916 0.0478 23 1 -0.6173 -11.3728 -2.0508 24 6 -0.7627 -6.0055 -2.6255 25 6 -0.5047 -4.6673 -2.6570 26 6 2.0412 -0.7238 -1.2496 27 1 -0.3633 0.5126 0.8908 28 1 -0.3633 0.5153 -0.8892 29 1 -0.3634 -1.0276 -0.0005 30 1 2.0552 3.1494 -0.9618 31 1 1.6989 -0.1960 2.1388 32 1 3.1306 -0.7447 1.2351 33 1 1.8480 -2.6630 2.1669 34 1 0.4132 -2.1355 1.2539 35 1 3.0978 -3.0044 0.0865 36 1 1.5571 -3.8928 -0.0127 37 1 2.5731 -4.6611 -1.2006 38 1 2.1213 -7.0611 -1.1272 39 1 1.5039 -9.0929 0.6580 40 1 -1.6913 -6.3868 -3.0237 41 1 -1.2293 -3.9884 -3.0817 42 1 3.1274 -0.6463 -1.2982 43 1 1.6006 -0.2730 -2.1389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262958588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:19 Heat of formation + Delta-G solvation = -110.209790 kcal Electronic energy + Delta-G solvation = -26889.338322 eV Core-core repulsion = 23091.806453 eV Total energy + Delta-G solvation = -3797.531870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04861 -39.62544 -37.70355 -36.86207 -36.23727 -34.05437 -33.44519 -31.69798 -30.22637 -29.54243 -27.33446 -26.22152 -25.15937 -24.33217 -22.33189 -21.54331 -20.96965 -19.58506 -18.49779 -18.06251 -17.53620 -17.09867 -16.10509 -16.02244 -15.71326 -15.26156 -14.73256 -14.60225 -14.29011 -13.90472 -13.69515 -13.48496 -13.24621 -12.95511 -12.74048 -12.63842 -12.28174 -12.14139 -11.93109 -11.84765 -11.71845 -11.45418 -11.33560 -11.27191 -11.06852 -10.91856 -10.89296 -10.59361 -10.55497 -10.41372 -10.06815 -9.56694 -9.35227 -9.00854 -8.32021 -7.69843 -7.56028 -7.03401 -4.61967 2.00465 2.25370 2.80257 2.91125 2.95101 2.97069 2.97559 3.46317 3.68435 3.74615 4.38379 4.45736 4.64395 4.70745 5.03221 5.10159 5.22066 5.40152 5.46457 5.52921 5.57765 5.69992 5.72224 5.78423 5.84557 5.92235 6.03620 6.05740 6.13796 6.20292 6.25287 6.30584 6.36880 6.74798 6.80561 6.85166 7.01710 7.09873 7.41256 7.56845 7.71937 7.76880 7.83308 7.99776 8.05857 8.38132 8.62104 8.72496 8.90993 9.88396 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.003118 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.986316 B = 8978.806375 C = 9607.668938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C 0.493 3.507 4 O -0.516 6.516 5 O -0.510 6.510 6 C -0.098 4.098 7 C -0.137 4.137 8 C 0.093 3.907 9 N -0.614 5.614 10 C 0.579 3.421 11 O -0.565 6.565 12 C -0.279 4.279 13 C -0.070 4.070 14 C -0.175 4.175 15 C 0.128 3.872 16 C -0.445 4.445 17 H 0.084 0.916 18 C 0.075 3.925 19 N -0.775 5.775 20 Si 0.913 3.087 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.236 4.236 25 C -0.027 4.027 26 C 0.128 3.872 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.407 0.593 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.286 0.714 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 10.788 4.150 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 C 0.335 3.665 4 O -0.404 6.404 5 O -0.321 6.321 6 C -0.136 4.136 7 C -0.175 4.175 8 C -0.029 4.029 9 N -0.348 5.348 10 C 0.375 3.625 11 O -0.446 6.446 12 C -0.284 4.284 13 C -0.089 4.089 14 C -0.194 4.194 15 C 0.124 3.876 16 C -0.473 4.473 17 H 0.102 0.898 18 C -0.146 4.146 19 N -0.398 5.398 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.255 4.255 25 C -0.046 4.046 26 C 0.004 3.996 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.266 0.734 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.476 10.771 4.106 11.790 hybrid contribution 0.423 -0.102 0.240 0.497 sum 2.899 10.669 4.346 11.880 Atomic orbital electron populations 1.21860 0.90981 1.04231 1.02468 1.20936 0.98851 0.87320 0.99570 1.23399 0.76391 0.88341 0.78404 1.90699 1.35890 1.77254 1.36520 1.84594 1.71982 1.27302 1.48212 1.21484 1.01249 0.95626 0.95233 1.22040 1.02019 0.94598 0.98826 1.22278 0.99933 0.97530 0.83202 1.47899 1.58337 1.09383 1.19181 1.18759 0.75055 0.88254 0.80473 1.90650 1.53099 1.65991 1.34820 1.18797 1.00699 0.89998 1.18871 1.20644 0.96946 0.94062 0.97287 1.20997 0.98264 0.93751 1.06430 1.17770 0.89740 0.92905 0.87137 1.19829 1.22720 0.92503 1.12229 0.89812 1.26060 0.92701 1.02052 0.93765 1.69722 1.25201 1.38846 1.06059 0.86220 0.80191 0.81110 0.78812 1.18981 1.20047 1.18344 1.20701 1.00038 0.92606 1.12178 1.20257 0.94545 0.94996 0.94800 1.21360 0.99021 0.82556 0.96620 0.92363 0.91172 0.90095 0.73426 0.90964 0.90972 0.90079 0.90753 0.91974 0.86312 0.88396 0.86140 0.90297 0.88431 0.88601 0.91870 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 7.92 37.16 0.29 -1.39 16 2 C -0.06 -0.79 0.71 -155.54 -0.11 -0.91 16 3 C 0.49 5.92 6.93 36.00 0.25 6.17 16 4 O -0.52 -7.27 16.74 -18.75 -0.31 -7.59 16 5 O -0.51 -4.96 13.26 -39.24 -0.52 -5.48 16 6 C -0.10 -1.14 4.01 -26.69 -0.11 -1.25 16 7 C -0.14 -1.63 5.74 -26.62 -0.15 -1.78 16 8 C 0.09 1.33 4.76 -3.72 -0.02 1.31 16 9 N -0.61 -9.96 2.41 -173.95 -0.42 -10.38 16 10 C 0.58 11.74 7.37 -12.42 -0.09 11.65 16 11 O -0.57 -12.87 16.23 5.29 0.09 -12.79 16 12 C -0.28 -6.06 5.31 -104.73 -0.56 -6.61 16 13 C -0.07 -1.49 7.27 -39.61 -0.29 -1.78 16 14 C -0.18 -4.11 8.63 -39.27 -0.34 -4.45 16 15 C 0.13 3.14 5.57 -106.80 -0.59 2.54 16 16 C -0.44 -10.79 9.05 -37.75 -0.34 -11.13 16 17 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 18 C 0.08 1.70 5.15 -17.31 -0.09 1.61 16 19 N -0.77 -17.90 10.94 55.56 0.61 -17.29 16 20 Si 0.91 16.98 29.59 -169.99 -5.03 11.95 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 23 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 24 C -0.24 -5.49 9.73 -39.27 -0.38 -5.87 16 25 C -0.03 -0.60 9.54 -39.61 -0.38 -0.98 16 26 C 0.13 1.81 5.05 -3.71 -0.02 1.80 16 27 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 28 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 29 H 0.08 1.10 5.97 -51.93 -0.31 0.79 16 30 H 0.41 2.06 9.10 45.56 0.41 2.48 16 31 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.92 6.33 -51.93 -0.33 0.59 16 35 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.12 1.96 4.47 -51.93 -0.23 1.73 16 37 H 0.10 1.82 6.04 -52.49 -0.32 1.50 16 38 H 0.12 2.89 6.18 -52.48 -0.32 2.56 16 39 H 0.29 5.96 8.29 -40.82 -0.34 5.62 16 40 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.10 2.06 7.99 -52.49 -0.42 1.64 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 1.62 7.00 -51.93 -0.36 1.25 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -28.79 347.34 -8.08 -36.86 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -4.80 Total: 10.55 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -2.92 Total: -11.08 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.19 Total: -27.67 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.75 Total: -25.85 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.79 -8.08 -36.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262958588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.346 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds