Wall clock time and date at job start Tue Mar 31 2020 12:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.52569 * 2 1 4 4 O 1.20826 * 119.99577 * 120.08516 * 3 2 1 5 5 O 1.34225 * 120.00338 * 300.08554 * 3 2 1 6 6 C 1.53045 * 109.49584 * 120.08883 * 2 1 3 7 7 C 1.53034 * 109.53946 * 58.58443 * 6 2 1 8 8 C 1.53187 * 109.31637 * 61.36132 * 7 6 2 9 9 N 1.46919 * 108.77731 * 305.36387 * 8 7 6 10 10 C 1.34775 * 120.63219 * 233.62666 * 9 8 7 11 11 O 1.21590 * 119.99522 * 174.28281 * 10 9 8 12 12 C 1.47640 * 120.00151 * 354.28581 * 10 9 8 13 13 C 1.40009 * 119.89068 * 324.34351 * 12 10 9 14 14 C 1.36316 * 120.10518 * 179.76433 * 13 12 10 15 15 C 1.40895 * 119.89239 * 0.50766 * 14 13 12 16 16 C 1.41102 * 120.10544 * 179.71778 * 15 14 13 17 17 H 1.07997 * 120.00122 * 205.54847 * 16 15 14 18 18 C 1.40223 * 120.00013 * 25.55471 * 16 15 14 19 19 N 1.30647 * 120.00184 * 16.73562 * 18 16 15 20 20 Si 1.86804 * 120.00080 * 196.73595 * 18 16 15 21 21 H 1.48503 * 109.47059 * 90.00185 * 20 18 16 22 22 H 1.48504 * 109.47026 * 209.99771 * 20 18 16 23 23 H 1.48492 * 109.47320 * 329.99771 * 20 18 16 24 24 C 1.40890 * 119.78672 * 359.74977 * 15 14 13 25 25 C 1.36314 * 119.89738 * 359.97438 * 24 15 14 26 26 C 1.46933 * 118.73639 * 53.60947 * 9 8 7 27 27 H 1.09009 * 109.46613 * 299.91585 * 1 2 3 28 28 H 1.09003 * 109.47013 * 59.90881 * 1 2 3 29 29 H 1.08994 * 109.47399 * 179.97438 * 1 2 3 30 30 H 0.96702 * 117.00033 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.45536 * 298.55525 * 6 2 1 32 32 H 1.09006 * 109.45464 * 178.60119 * 6 2 1 33 33 H 1.09001 * 109.49367 * 181.31840 * 7 6 2 34 34 H 1.09002 * 109.49487 * 301.40973 * 7 6 2 35 35 H 1.09001 * 109.58363 * 65.15543 * 8 7 6 36 36 H 1.09002 * 109.58626 * 185.43480 * 8 7 6 37 37 H 1.08000 * 119.95329 * 0.02562 * 13 12 10 38 38 H 1.08004 * 120.05852 * 180.27933 * 14 13 12 39 39 H 0.97002 * 120.00152 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.04823 * 180.02562 * 24 15 14 41 41 H 1.07993 * 119.95014 * 179.97438 * 25 24 15 42 42 H 1.09004 * 109.58533 * 66.18035 * 26 9 8 43 43 H 1.09000 * 109.58443 * 186.60107 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.7300 1.8143 0.9055 5 8 1.7089 2.2477 -1.0058 6 6 2.0408 -0.7233 1.2483 7 6 1.5030 -2.1559 1.2658 8 6 2.0138 -2.9040 0.0305 9 7 1.6513 -2.1382 -1.1697 10 6 0.9738 -2.7217 -2.1781 11 8 0.5890 -2.0539 -3.1185 12 6 0.6987 -4.1718 -2.1407 13 6 1.6445 -5.0475 -1.5942 14 6 1.3931 -6.3867 -1.5531 15 6 0.1836 -6.8902 -2.0716 16 6 -0.0788 -8.2762 -2.0368 17 1 -0.7529 -8.7164 -2.7566 18 6 0.5356 -9.0820 -1.0675 19 7 1.0785 -8.5355 -0.0123 20 14 0.5780 -10.9368 -1.2851 21 1 1.8070 -11.3205 -2.0250 22 1 0.5779 -11.5916 0.0478 23 1 -0.6173 -11.3728 -2.0508 24 6 -0.7627 -6.0055 -2.6255 25 6 -0.5047 -4.6673 -2.6570 26 6 2.0412 -0.7238 -1.2496 27 1 -0.3633 0.5126 0.8908 28 1 -0.3633 0.5153 -0.8892 29 1 -0.3634 -1.0276 -0.0005 30 1 2.0552 3.1494 -0.9618 31 1 1.6989 -0.1960 2.1388 32 1 3.1306 -0.7447 1.2351 33 1 1.8480 -2.6630 2.1669 34 1 0.4132 -2.1355 1.2539 35 1 3.0978 -3.0044 0.0865 36 1 1.5571 -3.8928 -0.0127 37 1 2.5731 -4.6611 -1.2006 38 1 2.1213 -7.0611 -1.1272 39 1 1.5039 -9.0929 0.6580 40 1 -1.6913 -6.3868 -3.0237 41 1 -1.2293 -3.9884 -3.0817 42 1 3.1274 -0.6463 -1.2982 43 1 1.6006 -0.2730 -2.1389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262958588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:18 Heat of formation + Delta-G solvation = -125.796431 kcal Electronic energy + Delta-G solvation = -26890.014210 eV Core-core repulsion = 23091.806453 eV Total energy + Delta-G solvation = -3798.207757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11303 -40.95125 -39.19429 -38.35758 -37.16225 -35.71985 -34.78575 -32.81645 -31.90820 -31.32187 -28.57145 -27.66267 -26.42164 -25.50361 -23.55557 -23.08394 -22.62105 -20.88669 -19.70431 -19.29761 -18.98841 -18.35186 -17.43034 -17.34329 -17.07972 -16.59605 -15.99689 -15.88847 -15.69166 -15.14938 -15.06287 -14.82607 -14.51167 -14.43786 -14.09044 -14.06168 -13.71260 -13.56752 -13.25818 -13.22264 -12.85013 -12.79811 -12.64444 -12.59770 -12.43139 -12.30565 -12.00074 -11.90747 -11.74385 -11.58197 -11.47192 -11.29031 -11.05954 -10.63837 -9.67878 -9.46484 -9.33202 -8.73677 -6.43913 0.53996 1.05288 1.16133 1.41063 1.45336 1.54154 1.85396 2.05109 2.19336 2.24786 2.74580 3.37422 3.60812 3.67643 3.74204 3.99059 4.00712 4.10942 4.31758 4.35646 4.44252 4.47380 4.52633 4.63503 4.64499 4.72951 4.86351 4.88343 4.97003 5.00397 5.07023 5.10628 5.12949 5.20116 5.32511 5.38492 5.53255 5.57522 5.64500 5.83109 5.99886 6.03197 6.26514 6.48491 6.58615 6.82437 6.92514 6.94055 7.33528 8.20929 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.003118 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.986316 B = 8978.806375 C = 9607.668938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C 0.502 3.498 4 O -0.536 6.536 5 O -0.508 6.508 6 C -0.093 4.093 7 C -0.129 4.129 8 C 0.088 3.912 9 N -0.604 5.604 10 C 0.579 3.421 11 O -0.596 6.596 12 C -0.284 4.284 13 C -0.056 4.056 14 C -0.193 4.193 15 C 0.102 3.898 16 C -0.478 4.478 17 H 0.081 0.919 18 C 0.041 3.959 19 N -0.798 5.798 20 Si 0.983 3.017 21 H -0.261 1.261 22 H -0.265 1.265 23 H -0.260 1.260 24 C -0.250 4.250 25 C -0.036 4.036 26 C 0.127 3.873 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.429 0.571 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.296 0.704 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 11.342 5.418 13.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.064 4.064 3 C 0.345 3.655 4 O -0.425 6.425 5 O -0.322 6.322 6 C -0.130 4.130 7 C -0.167 4.167 8 C -0.033 4.033 9 N -0.336 5.336 10 C 0.373 3.627 11 O -0.479 6.479 12 C -0.288 4.288 13 C -0.075 4.075 14 C -0.212 4.212 15 C 0.099 3.901 16 C -0.506 4.506 17 H 0.099 0.901 18 C -0.178 4.178 19 N -0.421 5.421 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.189 1.189 23 H -0.184 1.184 24 C -0.270 4.270 25 C -0.055 4.055 26 C 0.004 3.996 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.291 0.709 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.143 0.857 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.607 11.371 5.398 13.094 hybrid contribution 0.082 -0.118 -0.149 0.207 sum 3.689 11.253 5.250 12.953 Atomic orbital electron populations 1.21812 0.91047 1.03313 1.03026 1.20879 0.98778 0.87851 0.98938 1.23122 0.75815 0.88241 0.78346 1.90702 1.36826 1.77648 1.37370 1.84550 1.71733 1.28724 1.47170 1.21453 1.01479 0.95042 0.95053 1.21988 1.01601 0.94865 0.98274 1.22395 1.01099 0.96556 0.83281 1.47830 1.56691 1.10447 1.18586 1.18526 0.75567 0.87590 0.81028 1.90631 1.54664 1.66310 1.36315 1.19052 1.00361 0.91305 1.18063 1.20820 0.97633 0.93104 0.95927 1.20991 0.98036 0.94597 1.07615 1.18091 0.90490 0.93598 0.87899 1.20054 1.24183 0.93019 1.13334 0.90088 1.26807 0.91850 1.06243 0.92930 1.69736 1.25177 1.40708 1.06512 0.85172 0.80022 0.75406 0.79042 1.18592 1.18902 1.18394 1.20825 1.00329 0.93000 1.12835 1.20408 0.95262 0.94831 0.94982 1.21471 0.99918 0.81077 0.97091 0.90590 0.91878 0.91701 0.70915 0.90022 0.90455 0.87963 0.91445 0.89804 0.88589 0.85735 0.86907 0.89297 0.88014 0.88146 0.90174 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 7.92 71.98 0.57 -2.52 16 2 C -0.06 -1.40 0.71 -52.85 -0.04 -1.44 16 3 C 0.50 10.83 6.93 71.24 0.49 11.33 16 4 O -0.54 -13.71 16.74 21.97 0.37 -13.34 16 5 O -0.51 -8.69 13.26 -51.36 -0.68 -9.37 16 6 C -0.09 -1.88 4.01 30.62 0.12 -1.76 16 7 C -0.13 -2.77 5.74 30.67 0.18 -2.59 16 8 C 0.09 2.35 4.76 86.36 0.41 2.76 16 9 N -0.60 -18.84 2.41 -822.53 -1.98 -20.82 16 10 C 0.58 23.35 7.37 86.73 0.64 23.99 16 11 O -0.60 -27.32 16.23 -4.00 -0.06 -27.38 16 12 C -0.28 -12.39 5.31 -19.94 -0.11 -12.49 16 13 C -0.06 -2.37 7.27 22.25 0.16 -2.21 16 14 C -0.19 -9.22 8.63 22.47 0.19 -9.03 16 15 C 0.10 5.17 5.57 -21.28 -0.12 5.06 16 16 C -0.48 -23.79 9.05 23.46 0.21 -23.58 16 17 H 0.08 3.91 7.90 -2.91 -0.02 3.89 16 18 C 0.04 1.84 5.15 85.35 0.44 2.28 16 19 N -0.80 -36.91 10.94 21.87 0.24 -36.67 16 20 Si 0.98 34.45 29.59 68.60 2.03 36.48 16 21 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 22 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 23 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 24 C -0.25 -12.07 9.73 22.47 0.22 -11.85 16 25 C -0.04 -1.64 9.54 22.25 0.21 -1.43 16 26 C 0.13 3.39 5.05 86.36 0.44 3.83 16 27 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.06 1.53 8.11 -2.39 -0.02 1.51 16 29 H 0.06 1.71 5.97 -2.39 -0.01 1.69 16 30 H 0.43 3.21 9.10 -74.06 -0.67 2.53 16 31 H 0.08 1.56 8.07 -2.39 -0.02 1.55 16 32 H 0.08 1.53 8.13 -2.38 -0.02 1.51 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.56 6.33 -2.39 -0.02 1.55 16 35 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 36 H 0.10 3.07 4.47 -2.39 -0.01 3.06 16 37 H 0.12 4.48 6.04 -2.91 -0.02 4.47 16 38 H 0.11 5.50 6.18 -2.91 -0.02 5.48 16 39 H 0.30 12.17 8.29 -92.71 -0.77 11.40 16 40 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.10 4.44 7.99 -2.91 -0.02 4.41 16 42 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.09 2.66 7.00 -2.39 -0.02 2.65 16 Total: -1.00 -62.42 347.34 4.32 -58.11 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.38 Total: 32.67 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 4.03 Total: -19.66 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -1.74 Total: -57.50 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -0.38 Total: -50.10 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Total: -62.42 4.32 -58.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262958588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.688 kcal (2) G-P(sol) polarization free energy of solvation -62.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds