Wall clock time and date at job start Tue Mar 31 2020 12:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.49856 * 2 1 4 4 O 1.20825 * 119.99963 * 239.93418 * 3 2 1 5 5 O 1.34232 * 120.00029 * 59.93531 * 3 2 1 6 6 C 1.53036 * 109.49764 * 239.93428 * 2 1 3 7 7 C 1.53042 * 109.53858 * 301.41191 * 6 2 1 8 8 C 1.53193 * 109.31273 * 298.63616 * 7 6 2 9 9 N 1.46929 * 108.77602 * 54.63387 * 8 7 6 10 10 C 1.34774 * 120.62895 * 126.36743 * 9 8 7 11 11 O 1.21543 * 120.00400 * 354.25551 * 10 9 8 12 12 C 1.47893 * 120.00005 * 173.98360 * 10 9 8 13 13 C 1.39916 * 120.02378 * 325.29989 * 12 10 9 14 14 C 1.38328 * 120.36102 * 179.97438 * 13 12 10 15 15 C 1.37750 * 120.41057 * 0.02562 * 14 13 12 16 16 C 1.40752 * 120.03775 * 359.97050 * 15 14 13 17 17 C 1.41436 * 120.17640 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99831 * 25.03154 * 17 16 15 19 19 C 1.39937 * 120.00346 * 205.02714 * 17 16 15 20 20 N 1.30829 * 119.99523 * 17.10467 * 19 17 16 21 21 Si 1.86803 * 120.00491 * 197.10162 * 19 17 16 22 22 H 1.48500 * 109.46850 * 59.99950 * 21 19 17 23 23 H 1.48493 * 109.47258 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47102 * 300.00453 * 21 19 17 25 25 C 1.38993 * 120.02721 * 145.02277 * 12 10 9 26 26 C 1.46927 * 118.73819 * 306.64245 * 9 8 7 27 27 H 1.08998 * 109.47197 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46946 * 300.06696 * 1 2 3 29 29 H 1.09004 * 109.47323 * 60.06595 * 1 2 3 30 30 H 0.96701 * 116.99774 * 180.02562 * 5 3 2 31 31 H 1.09008 * 109.46269 * 181.39818 * 6 2 1 32 32 H 1.08995 * 109.45079 * 61.43102 * 6 2 1 33 33 H 1.08997 * 109.49931 * 178.68235 * 7 6 2 34 34 H 1.09005 * 109.49304 * 58.58530 * 7 6 2 35 35 H 1.08994 * 109.59045 * 294.84326 * 8 7 6 36 36 H 1.09002 * 109.58319 * 174.41996 * 8 7 6 37 37 H 1.08003 * 119.81924 * 0.02562 * 13 12 10 38 38 H 1.07997 * 119.79485 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.98032 * 180.02562 * 15 14 13 40 40 H 0.97000 * 119.99586 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.20154 * 359.97283 * 25 12 10 42 42 H 1.08997 * 109.58634 * 173.14290 * 26 9 8 43 43 H 1.08998 * 109.58371 * 293.57268 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4205 0.0000 4 8 2.7288 1.8150 -0.9056 5 8 1.7080 2.2476 1.0061 6 6 2.0408 -0.7227 -1.2485 7 6 1.5030 -2.1554 -1.2665 8 6 2.0140 -2.9040 -0.0315 9 7 1.6515 -2.1384 1.1691 10 6 0.9740 -2.7224 2.1772 11 8 0.5659 -3.8608 2.0560 12 6 0.7322 -1.9801 3.4333 13 6 1.6940 -1.0844 3.9134 14 6 1.4748 -0.3860 5.0871 15 6 0.3080 -0.5644 5.7972 16 6 -0.6711 -1.4611 5.3298 17 6 -1.8704 -1.6461 6.0562 18 1 -2.2340 -0.8642 6.7066 19 6 -2.5862 -2.8422 5.9323 20 7 -2.0067 -3.9021 5.4300 21 14 -4.3688 -2.9256 6.4843 22 1 -5.1726 -1.9448 5.7114 23 1 -4.8964 -4.2935 6.2491 24 1 -4.4544 -2.6045 7.9316 25 6 -0.4530 -2.1673 4.1348 26 6 2.0364 -0.7226 1.2470 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5149 0.8894 29 1 -0.3634 0.5128 -0.8906 30 1 2.0540 3.1495 0.9621 31 1 3.1305 -0.7442 -1.2355 32 1 1.6986 -0.1952 -2.1388 33 1 1.8480 -2.6623 -2.1677 34 1 0.4132 -2.1351 -1.2546 35 1 3.0979 -3.0043 -0.0874 36 1 1.5554 -3.8918 0.0128 37 1 2.6121 -0.9369 3.3640 38 1 2.2236 0.3027 5.4495 39 1 0.1440 -0.0152 6.7125 40 1 -2.5027 -4.7313 5.3444 41 1 -1.2003 -2.8540 3.7653 42 1 1.5926 -0.2716 2.1346 43 1 3.1222 -0.6414 1.2974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263180454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:22 Heat of formation + Delta-G solvation = -105.762059 kcal Electronic energy + Delta-G solvation = -27500.868018 eV Core-core repulsion = 23703.529016 eV Total energy + Delta-G solvation = -3797.339002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.04971 -39.63307 -37.66050 -36.85528 -36.16486 -33.88502 -33.21066 -32.25463 -29.94909 -29.48545 -27.19323 -25.64508 -25.41341 -24.41256 -22.79201 -21.33848 -21.00352 -19.55804 -18.53350 -18.00136 -17.62360 -16.78189 -16.02967 -15.81058 -15.42658 -15.24466 -14.86707 -14.69857 -14.46423 -13.95309 -13.68991 -13.56331 -13.19270 -12.97747 -12.82911 -12.51899 -12.36649 -12.19256 -11.79325 -11.70867 -11.62279 -11.42355 -11.26247 -11.14526 -10.97553 -10.90811 -10.75714 -10.67966 -10.40214 -10.33652 -10.09755 -9.71764 -9.25066 -8.97078 -8.38363 -7.62925 -7.51808 -6.81089 -4.43994 2.07748 2.25548 2.78448 2.87205 3.05626 3.07021 3.13412 3.39288 3.67361 3.89476 4.41080 4.53162 4.67621 4.70170 4.94335 5.05242 5.24441 5.34029 5.41585 5.52695 5.59019 5.63198 5.71567 5.77736 5.81113 5.85729 6.00941 6.04457 6.09504 6.12296 6.28698 6.33446 6.40581 6.66165 6.82146 6.96036 7.01569 7.18300 7.35663 7.61726 7.74168 7.81209 7.83545 7.95169 8.13866 8.46958 8.76831 8.79518 8.83062 10.12969 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016265 B = 0.004208 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.109594 B = 6652.072134 C = 7259.031023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C 0.495 3.505 4 O -0.519 6.519 5 O -0.504 6.504 6 C -0.098 4.098 7 C -0.135 4.135 8 C 0.108 3.892 9 N -0.613 5.613 10 C 0.570 3.430 11 O -0.538 6.538 12 C -0.122 4.122 13 C -0.226 4.226 14 C -0.094 4.094 15 C -0.212 4.212 16 C 0.103 3.897 17 C -0.461 4.461 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.782 5.782 21 Si 0.909 3.091 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.098 4.098 26 C 0.109 3.891 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.408 0.592 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.285 0.715 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 7.039 -10.307 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C 0.337 3.663 4 O -0.407 6.407 5 O -0.315 6.315 6 C -0.136 4.136 7 C -0.173 4.173 8 C -0.015 4.015 9 N -0.347 5.347 10 C 0.362 3.638 11 O -0.414 6.414 12 C -0.125 4.125 13 C -0.246 4.246 14 C -0.112 4.112 15 C -0.232 4.232 16 C 0.100 3.900 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.146 4.146 20 N -0.406 5.406 21 Si 0.733 3.267 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.118 4.118 26 C -0.014 4.014 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.266 0.734 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.017 5.828 -10.633 13.123 hybrid contribution -0.342 0.582 0.154 0.693 sum 4.675 6.410 -10.480 13.144 Atomic orbital electron populations 1.21892 0.90910 1.04122 1.02918 1.20878 0.98953 0.87688 0.99434 1.23290 0.76291 0.88313 0.78449 1.90691 1.36088 1.77308 1.36644 1.84622 1.71779 1.27255 1.47857 1.21468 1.01217 0.95296 0.95615 1.21998 1.02021 0.95005 0.98276 1.21560 0.99580 0.96614 0.83739 1.47898 1.58055 1.10294 1.18458 1.18989 0.75466 0.86062 0.83280 1.90713 1.50233 1.18777 1.81728 1.19394 0.98108 1.00150 0.94872 1.20496 0.99816 1.03682 1.00585 1.20437 0.96823 0.98909 0.95037 1.21096 0.95034 1.06318 1.00737 1.17560 0.91954 0.90035 0.90403 1.19564 1.05270 1.00621 1.23487 0.90126 1.25966 1.00148 0.94978 0.93509 1.69799 1.37382 1.01002 1.32374 0.86344 0.81979 0.78282 0.80051 1.18746 1.20233 1.18943 1.21501 0.95825 1.00574 0.93921 1.22188 0.99686 0.81685 0.97875 0.90352 0.90598 0.92353 0.73365 0.90958 0.90906 0.90348 0.90756 0.91874 0.88737 0.88478 0.88877 0.88652 0.90357 0.85419 0.85012 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.91 37.16 0.29 -1.49 16 2 C -0.07 -0.84 0.71 -155.77 -0.11 -0.95 16 3 C 0.49 6.11 6.93 36.00 0.25 6.36 16 4 O -0.52 -7.39 16.74 -18.75 -0.31 -7.71 16 5 O -0.50 -5.33 13.25 -39.26 -0.52 -5.85 16 6 C -0.10 -1.09 4.01 -26.69 -0.11 -1.20 16 7 C -0.13 -1.46 5.74 -26.61 -0.15 -1.62 16 8 C 0.11 1.45 6.44 -3.71 -0.02 1.42 16 9 N -0.61 -9.95 2.42 -174.12 -0.42 -10.37 16 10 C 0.57 12.06 7.38 -12.31 -0.09 11.97 16 11 O -0.54 -13.12 16.24 5.33 0.09 -13.03 16 12 C -0.12 -2.77 5.29 -105.04 -0.56 -3.32 16 13 C -0.23 -4.59 7.37 -38.92 -0.29 -4.88 16 14 C -0.09 -1.93 10.01 -39.73 -0.40 -2.32 16 15 C -0.21 -4.86 9.78 -38.81 -0.38 -5.24 16 16 C 0.10 2.63 5.56 -106.87 -0.59 2.04 16 17 C -0.46 -11.77 9.05 -37.73 -0.34 -12.11 16 18 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 19 C 0.07 1.81 5.15 -17.34 -0.09 1.72 16 20 N -0.78 -20.39 10.97 55.55 0.61 -19.78 16 21 Si 0.91 18.34 29.59 -169.99 -5.03 13.31 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 25 C -0.10 -2.51 8.24 -38.44 -0.32 -2.83 16 26 C 0.11 1.55 3.32 -3.93 -0.01 1.53 16 27 H 0.08 1.09 5.97 -51.93 -0.31 0.77 16 28 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.41 2.42 9.10 45.56 0.41 2.84 16 31 H 0.07 0.80 8.13 -51.92 -0.42 0.38 16 32 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.86 6.33 -51.93 -0.33 0.53 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 37 H 0.10 1.72 5.98 -52.48 -0.31 1.40 16 38 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 41 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 42 H 0.13 2.10 4.46 -51.93 -0.23 1.87 16 43 H 0.06 0.84 8.03 -51.93 -0.42 0.42 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -30.68 347.47 -8.07 -38.74 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.80 Total: 10.37 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.92 Total: -10.92 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.19 Total: -30.16 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.75 Total: -26.59 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.68 -8.07 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263180454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.019 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds