Wall clock time and date at job start Tue Mar 31 2020 12:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.49856 * 2 1 4 4 O 1.20825 * 119.99963 * 239.93418 * 3 2 1 5 5 O 1.34232 * 120.00029 * 59.93531 * 3 2 1 6 6 C 1.53036 * 109.49764 * 239.93428 * 2 1 3 7 7 C 1.53042 * 109.53858 * 301.41191 * 6 2 1 8 8 C 1.53193 * 109.31273 * 298.63616 * 7 6 2 9 9 N 1.46929 * 108.77602 * 54.63387 * 8 7 6 10 10 C 1.34774 * 120.62895 * 126.36743 * 9 8 7 11 11 O 1.21543 * 120.00400 * 354.25551 * 10 9 8 12 12 C 1.47893 * 120.00005 * 173.98360 * 10 9 8 13 13 C 1.39916 * 120.02378 * 325.29989 * 12 10 9 14 14 C 1.38328 * 120.36102 * 179.97438 * 13 12 10 15 15 C 1.37750 * 120.41057 * 0.02562 * 14 13 12 16 16 C 1.40752 * 120.03775 * 359.97050 * 15 14 13 17 17 C 1.41436 * 120.17640 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99831 * 25.03154 * 17 16 15 19 19 C 1.39937 * 120.00346 * 205.02714 * 17 16 15 20 20 N 1.30829 * 119.99523 * 17.10467 * 19 17 16 21 21 Si 1.86803 * 120.00491 * 197.10162 * 19 17 16 22 22 H 1.48500 * 109.46850 * 59.99950 * 21 19 17 23 23 H 1.48493 * 109.47258 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47102 * 300.00453 * 21 19 17 25 25 C 1.38993 * 120.02721 * 145.02277 * 12 10 9 26 26 C 1.46927 * 118.73819 * 306.64245 * 9 8 7 27 27 H 1.08998 * 109.47197 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46946 * 300.06696 * 1 2 3 29 29 H 1.09004 * 109.47323 * 60.06595 * 1 2 3 30 30 H 0.96701 * 116.99774 * 180.02562 * 5 3 2 31 31 H 1.09008 * 109.46269 * 181.39818 * 6 2 1 32 32 H 1.08995 * 109.45079 * 61.43102 * 6 2 1 33 33 H 1.08997 * 109.49931 * 178.68235 * 7 6 2 34 34 H 1.09005 * 109.49304 * 58.58530 * 7 6 2 35 35 H 1.08994 * 109.59045 * 294.84326 * 8 7 6 36 36 H 1.09002 * 109.58319 * 174.41996 * 8 7 6 37 37 H 1.08003 * 119.81924 * 0.02562 * 13 12 10 38 38 H 1.07997 * 119.79485 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.98032 * 180.02562 * 15 14 13 40 40 H 0.97000 * 119.99586 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.20154 * 359.97283 * 25 12 10 42 42 H 1.08997 * 109.58634 * 173.14290 * 26 9 8 43 43 H 1.08998 * 109.58371 * 293.57268 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4205 0.0000 4 8 2.7288 1.8150 -0.9056 5 8 1.7080 2.2476 1.0061 6 6 2.0408 -0.7227 -1.2485 7 6 1.5030 -2.1554 -1.2665 8 6 2.0140 -2.9040 -0.0315 9 7 1.6515 -2.1384 1.1691 10 6 0.9740 -2.7224 2.1772 11 8 0.5659 -3.8608 2.0560 12 6 0.7322 -1.9801 3.4333 13 6 1.6940 -1.0844 3.9134 14 6 1.4748 -0.3860 5.0871 15 6 0.3080 -0.5644 5.7972 16 6 -0.6711 -1.4611 5.3298 17 6 -1.8704 -1.6461 6.0562 18 1 -2.2340 -0.8642 6.7066 19 6 -2.5862 -2.8422 5.9323 20 7 -2.0067 -3.9021 5.4300 21 14 -4.3688 -2.9256 6.4843 22 1 -5.1726 -1.9448 5.7114 23 1 -4.8964 -4.2935 6.2491 24 1 -4.4544 -2.6045 7.9316 25 6 -0.4530 -2.1673 4.1348 26 6 2.0364 -0.7226 1.2470 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5149 0.8894 29 1 -0.3634 0.5128 -0.8906 30 1 2.0540 3.1495 0.9621 31 1 3.1305 -0.7442 -1.2355 32 1 1.6986 -0.1952 -2.1388 33 1 1.8480 -2.6623 -2.1677 34 1 0.4132 -2.1351 -1.2546 35 1 3.0979 -3.0043 -0.0874 36 1 1.5554 -3.8918 0.0128 37 1 2.6121 -0.9369 3.3640 38 1 2.2236 0.3027 5.4495 39 1 0.1440 -0.0152 6.7125 40 1 -2.5027 -4.7313 5.3444 41 1 -1.2003 -2.8540 3.7653 42 1 1.5926 -0.2716 2.1346 43 1 3.1222 -0.6414 1.2974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263180454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:21 Heat of formation + Delta-G solvation = -124.019720 kcal Electronic energy + Delta-G solvation = -27501.659729 eV Core-core repulsion = 23703.529016 eV Total energy + Delta-G solvation = -3798.130713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15676 -40.96112 -39.12487 -38.43555 -37.10921 -35.65931 -34.52822 -33.43879 -31.61255 -31.25952 -28.29375 -27.25409 -26.85419 -25.49468 -24.13919 -22.85787 -22.52549 -20.89472 -19.81371 -19.23355 -18.94930 -17.99938 -17.59519 -17.09986 -16.80704 -16.68974 -16.40246 -16.07086 -15.63057 -15.14090 -15.13921 -14.88855 -14.49099 -14.47613 -14.23143 -14.08612 -13.67338 -13.48314 -13.27536 -12.87880 -12.86173 -12.79141 -12.58061 -12.51167 -12.37575 -12.21024 -12.03304 -11.93399 -11.88666 -11.63294 -11.46103 -11.38471 -11.05275 -10.64029 -9.75960 -9.38439 -9.33280 -8.63438 -6.35960 0.48629 1.02094 1.10717 1.37677 1.48671 1.51528 1.82067 2.02007 2.20269 2.20752 2.75105 3.41069 3.58970 3.64676 3.71797 3.84400 4.04645 4.10497 4.31701 4.41920 4.44719 4.49507 4.56652 4.63517 4.70291 4.73804 4.85646 4.86658 4.93752 4.95929 5.05309 5.10169 5.13656 5.22200 5.32615 5.36712 5.52582 5.59593 5.60319 5.86213 5.97747 6.05827 6.27698 6.35135 6.62491 6.90429 6.96659 7.00568 7.20647 8.32371 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016265 B = 0.004208 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.109594 B = 6652.072134 C = 7259.031023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C 0.504 3.496 4 O -0.536 6.536 5 O -0.506 6.506 6 C -0.093 4.093 7 C -0.126 4.126 8 C 0.101 3.899 9 N -0.599 5.599 10 C 0.566 3.434 11 O -0.583 6.583 12 C -0.129 4.129 13 C -0.203 4.203 14 C -0.091 4.091 15 C -0.217 4.217 16 C 0.073 3.927 17 C -0.497 4.497 18 H 0.084 0.916 19 C 0.031 3.969 20 N -0.826 5.826 21 Si 0.980 3.020 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.254 1.254 25 C -0.131 4.131 26 C 0.105 3.895 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.429 0.571 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.286 0.714 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.061 9.047 -11.418 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C 0.346 3.654 4 O -0.426 6.426 5 O -0.319 6.319 6 C -0.131 4.131 7 C -0.164 4.164 8 C -0.020 4.020 9 N -0.331 5.331 10 C 0.357 3.643 11 O -0.464 6.464 12 C -0.133 4.133 13 C -0.223 4.223 14 C -0.109 4.109 15 C -0.237 4.237 16 C 0.070 3.930 17 C -0.527 4.527 18 H 0.102 0.898 19 C -0.184 4.184 20 N -0.451 5.451 21 Si 0.801 3.199 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.178 1.178 25 C -0.152 4.152 26 C -0.017 4.017 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.291 0.709 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.867 7.905 -11.761 15.747 hybrid contribution -0.710 0.101 0.419 0.830 sum 6.157 8.006 -11.342 15.187 Atomic orbital electron populations 1.21841 0.91520 1.03067 1.03156 1.20825 0.98424 0.88217 0.99230 1.23032 0.75762 0.88186 0.78379 1.90696 1.36902 1.77639 1.37341 1.84581 1.71636 1.28680 1.47034 1.21462 1.01674 0.94858 0.95082 1.21954 1.01372 0.95059 0.97991 1.21837 1.01049 0.95737 0.83408 1.47852 1.55979 1.11301 1.17958 1.18841 0.75967 0.85464 0.84024 1.90685 1.52424 1.20696 1.82617 1.19661 0.97634 1.00415 0.95551 1.20910 0.99902 1.01346 1.00121 1.20881 0.96659 0.98954 0.94383 1.21377 0.95382 1.05513 1.01412 1.17894 0.93108 0.91229 0.90732 1.19844 1.06603 1.01408 1.24804 0.89789 1.26827 1.04226 0.94160 0.93155 1.69911 1.39086 1.01624 1.34522 0.85275 0.76376 0.78296 0.79963 1.18278 1.19852 1.17796 1.21292 0.96857 1.01788 0.95227 1.22270 1.00967 0.80165 0.98306 0.92052 0.92017 0.90505 0.70936 0.90040 0.89959 0.87366 0.91834 0.89230 0.90766 0.84955 0.84546 0.87449 0.90368 0.88828 0.86740 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 7.91 71.98 0.57 -2.79 16 2 C -0.06 -1.45 0.71 -53.00 -0.04 -1.48 16 3 C 0.50 10.87 6.93 71.23 0.49 11.36 16 4 O -0.54 -13.47 16.74 21.97 0.37 -13.10 16 5 O -0.51 -9.14 13.25 -51.44 -0.68 -9.82 16 6 C -0.09 -1.76 4.01 30.62 0.12 -1.64 16 7 C -0.13 -2.42 5.74 30.67 0.18 -2.24 16 8 C 0.10 2.55 6.44 86.36 0.56 3.10 16 9 N -0.60 -18.79 2.42 -823.09 -1.99 -20.78 16 10 C 0.57 24.43 7.38 86.80 0.64 25.07 16 11 O -0.58 -29.92 16.24 -3.85 -0.06 -29.99 16 12 C -0.13 -5.97 5.29 -20.13 -0.11 -6.08 16 13 C -0.20 -7.88 7.37 22.70 0.17 -7.71 16 14 C -0.09 -3.51 10.01 22.18 0.22 -3.28 16 15 C -0.22 -9.89 9.78 22.77 0.22 -9.67 16 16 C 0.07 3.86 5.56 -21.32 -0.12 3.74 16 17 C -0.50 -26.58 9.05 23.47 0.21 -26.36 16 18 H 0.08 4.22 7.90 -2.91 -0.02 4.20 16 19 C 0.03 1.61 5.15 85.25 0.44 2.05 16 20 N -0.83 -45.91 10.97 21.82 0.24 -45.68 16 21 Si 0.98 39.01 29.59 68.60 2.03 41.04 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 25 C -0.13 -7.09 8.24 23.01 0.19 -6.90 16 26 C 0.11 2.71 3.32 86.22 0.29 3.00 16 27 H 0.06 1.70 5.97 -2.39 -0.01 1.69 16 28 H 0.06 1.66 8.11 -2.38 -0.02 1.64 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.43 3.68 9.10 -74.06 -0.67 3.01 16 31 H 0.08 1.45 8.13 -2.38 -0.02 1.43 16 32 H 0.08 1.47 8.07 -2.39 -0.02 1.45 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.39 6.33 -2.38 -0.02 1.37 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.22 7.00 -2.39 -0.02 2.20 16 37 H 0.13 4.17 5.98 -2.91 -0.02 4.15 16 38 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 40 H 0.29 14.73 8.30 -92.71 -0.77 13.97 16 41 H 0.09 5.64 6.13 -2.91 -0.02 5.63 16 42 H 0.11 3.38 4.46 -2.39 -0.01 3.37 16 43 H 0.09 1.93 8.03 -2.39 -0.02 1.91 16 Total: -1.00 -71.06 347.47 4.32 -66.74 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.38 Total: 31.42 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.03 Total: -19.84 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -1.75 Total: -66.45 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.38 Total: -52.91 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -71.06 4.32 -66.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263180454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.280 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds