Wall clock time and date at job start Tue Mar 31 2020 12:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.49991 * 2 1 4 4 O 1.20826 * 120.00608 * 119.99756 * 3 2 1 5 5 O 1.34238 * 119.99984 * 300.00409 * 3 2 1 6 6 C 1.53036 * 109.50068 * 120.06651 * 2 1 3 7 7 C 1.53035 * 109.54072 * 58.58401 * 6 2 1 8 8 C 1.53197 * 109.31024 * 61.36620 * 7 6 2 9 9 N 1.46915 * 108.77508 * 305.36781 * 8 7 6 10 10 C 1.34779 * 120.62973 * 233.62780 * 9 8 7 11 11 O 1.21549 * 120.00088 * 174.63404 * 10 9 8 12 12 C 1.47887 * 120.00113 * 354.63471 * 10 9 8 13 13 C 1.39922 * 120.02333 * 146.57066 * 12 10 9 14 14 C 1.38335 * 120.35591 * 180.02562 * 13 12 10 15 15 C 1.37749 * 120.41099 * 359.97083 * 14 13 12 16 16 C 1.40749 * 120.04106 * 0.02562 * 15 14 13 17 17 C 1.41436 * 120.17849 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00211 * 157.00961 * 17 16 15 19 19 C 1.39946 * 119.99948 * 337.01486 * 17 16 15 20 20 N 1.30823 * 119.99952 * 342.87389 * 19 17 16 21 21 Si 1.86797 * 119.99806 * 162.87670 * 19 17 16 22 22 H 1.48496 * 109.47355 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47178 * 119.99799 * 21 19 17 24 24 H 1.48507 * 109.47388 * 239.99741 * 21 19 17 25 25 C 1.38993 * 120.02450 * 326.30117 * 12 10 9 26 26 C 1.46991 * 118.75861 * 53.60847 * 9 8 7 27 27 H 1.08998 * 109.46809 * 59.99837 * 1 2 3 28 28 H 1.08998 * 109.47049 * 299.99667 * 1 2 3 29 29 H 1.08998 * 109.47141 * 180.02562 * 1 2 3 30 30 H 0.96696 * 116.99964 * 180.02562 * 5 3 2 31 31 H 1.09002 * 109.46627 * 178.61086 * 6 2 1 32 32 H 1.09004 * 109.45991 * 298.56492 * 6 2 1 33 33 H 1.09004 * 109.50461 * 181.31950 * 7 6 2 34 34 H 1.09004 * 109.50053 * 301.42016 * 7 6 2 35 35 H 1.08995 * 109.58219 * 65.15738 * 8 7 6 36 36 H 1.08999 * 109.58504 * 185.57881 * 8 7 6 37 37 H 1.07997 * 119.82165 * 0.02562 * 13 12 10 38 38 H 1.08003 * 119.79170 * 179.97438 * 14 13 12 39 39 H 1.08002 * 119.97883 * 179.97438 * 15 14 13 40 40 H 0.96998 * 119.99965 * 179.97438 * 20 19 17 41 41 H 1.07993 * 120.20566 * 359.97438 * 25 12 10 42 42 H 1.08997 * 109.63457 * 186.61475 * 26 9 8 43 43 H 1.08997 * 109.58097 * 66.17157 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4205 0.0000 4 8 2.7278 1.8155 0.9062 5 8 1.7091 2.2473 -1.0067 6 6 2.0409 -0.7227 1.2485 7 6 1.5031 -2.1554 1.2666 8 6 2.0141 -2.9040 0.0315 9 7 1.6516 -2.1385 -1.1689 10 6 0.9741 -2.7224 -2.1771 11 8 0.5949 -2.0564 -3.1206 12 6 0.6919 -4.1735 -2.1355 13 6 -0.4922 -4.6727 -2.6891 14 6 -0.7634 -6.0287 -2.6536 15 6 0.1290 -6.9032 -2.0736 16 6 1.3254 -6.4196 -1.5117 17 6 2.2434 -7.3149 -0.9149 18 1 3.2836 -7.0396 -0.8223 19 6 1.8039 -8.5575 -0.4446 20 7 0.5283 -8.7669 -0.2436 21 14 3.0387 -9.9171 -0.1039 22 1 4.4079 -9.4305 -0.4100 23 1 2.9607 -10.3097 1.3262 24 1 2.7293 -11.0923 -0.9574 25 6 1.6054 -5.0432 -1.5515 26 6 2.0413 -0.7235 -1.2498 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.0556 3.1490 -0.9631 31 1 3.1306 -0.7440 1.2355 32 1 1.6988 -0.1952 2.1389 33 1 1.8481 -2.6623 2.1678 34 1 0.4133 -2.1352 1.2546 35 1 3.0980 -3.0042 0.0876 36 1 1.5555 -3.8918 -0.0127 37 1 -1.1983 -3.9956 -3.1467 38 1 -1.6804 -6.4041 -3.0833 39 1 -0.0899 -7.9606 -2.0493 40 1 0.2236 -9.6283 0.0821 41 1 2.5228 -4.6630 -1.1272 42 1 1.6008 -0.2725 -2.1390 43 1 3.1275 -0.6459 -1.2983 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263180458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:24 Heat of formation + Delta-G solvation = -105.737384 kcal Electronic energy + Delta-G solvation = -27049.070978 eV Core-core repulsion = 23251.733047 eV Total energy + Delta-G solvation = -3797.337932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08857 -39.73224 -37.69848 -36.92699 -36.26248 -33.91142 -33.54708 -31.73809 -30.04824 -29.82749 -27.16193 -25.67048 -25.35509 -24.58024 -22.49137 -21.75565 -20.85559 -19.68359 -18.70793 -18.07966 -17.52197 -16.70370 -16.14711 -15.88774 -15.65308 -15.10918 -14.87658 -14.74750 -14.59786 -13.96292 -13.69584 -13.54104 -13.26636 -12.96984 -12.88221 -12.72350 -12.37784 -12.14511 -11.86468 -11.75718 -11.71494 -11.41509 -11.32254 -11.24495 -11.00763 -10.76971 -10.71954 -10.60910 -10.53037 -10.41541 -10.26188 -9.59199 -9.30323 -9.10032 -8.41159 -7.63738 -7.57806 -6.88639 -4.50954 1.98595 2.20295 2.65683 2.77500 3.00959 3.05180 3.08243 3.35356 3.63813 3.83905 4.36130 4.50025 4.60790 4.68496 5.02194 5.09480 5.17452 5.29800 5.45332 5.50290 5.56932 5.63952 5.70459 5.72688 5.84109 5.92663 5.97851 6.09974 6.12652 6.21495 6.29239 6.34806 6.37537 6.68693 6.76477 6.85921 6.97653 7.11113 7.28874 7.56728 7.70370 7.74653 7.84018 7.90964 8.04252 8.44718 8.68462 8.72764 8.76843 10.04706 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.003545 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.467749 B = 7895.907103 C = 8749.428518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C 0.493 3.507 4 O -0.515 6.515 5 O -0.510 6.510 6 C -0.099 4.099 7 C -0.137 4.137 8 C 0.083 3.917 9 N -0.608 5.608 10 C 0.571 3.429 11 O -0.552 6.552 12 C -0.112 4.112 13 C -0.180 4.180 14 C -0.113 4.113 15 C -0.140 4.140 16 C 0.100 3.900 17 C -0.460 4.460 18 H 0.080 0.920 19 C 0.076 3.924 20 N -0.792 5.792 21 Si 0.908 3.092 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.272 1.272 25 C -0.201 4.201 26 C 0.127 3.873 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.408 0.592 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.282 0.718 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 11.593 3.430 12.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C 0.334 3.666 4 O -0.402 6.402 5 O -0.321 6.321 6 C -0.137 4.137 7 C -0.175 4.175 8 C -0.039 4.039 9 N -0.342 5.342 10 C 0.363 3.637 11 O -0.430 6.430 12 C -0.115 4.115 13 C -0.200 4.200 14 C -0.132 4.132 15 C -0.160 4.160 16 C 0.098 3.902 17 C -0.489 4.489 18 H 0.098 0.902 19 C -0.142 4.142 20 N -0.418 5.418 21 Si 0.732 3.268 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.221 4.221 26 C 0.004 3.996 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.266 0.734 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.200 11.464 3.247 11.976 hybrid contribution 0.798 0.047 0.385 0.887 sum 1.998 11.511 3.632 12.234 Atomic orbital electron populations 1.21867 0.90980 1.04215 1.02555 1.20929 0.98847 0.87369 0.99505 1.23377 0.76398 0.88325 0.78454 1.90704 1.35852 1.77190 1.36480 1.84592 1.72019 1.27361 1.48161 1.21496 1.01337 0.95660 0.95175 1.22049 1.01942 0.94534 0.98949 1.22560 1.00551 0.97983 0.82781 1.47901 1.57401 1.09691 1.19180 1.18982 0.75397 0.88369 0.80926 1.90671 1.52394 1.65564 1.34418 1.19227 0.97935 0.89981 1.04376 1.20387 0.97568 0.95124 1.06912 1.20687 0.98749 0.93149 1.00597 1.21637 0.95538 0.99713 0.99094 1.17544 0.92447 0.90608 0.89594 1.19599 0.96273 0.99010 1.34037 0.90212 1.25905 0.95737 0.99527 0.93015 1.69793 1.15489 1.24327 1.32154 0.86260 0.81542 0.80376 0.78597 1.18348 1.19929 1.19676 1.21349 1.00190 0.93361 1.07243 1.21417 0.99300 0.82172 0.96751 0.91161 0.92253 0.90134 0.73388 0.90883 0.90908 0.89885 0.90803 0.91511 0.85331 0.88455 0.88653 0.85665 0.90742 0.87383 0.87782 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.92 37.16 0.29 -1.36 16 2 C -0.06 -0.78 0.71 -155.54 -0.11 -0.89 16 3 C 0.49 5.82 6.93 36.00 0.25 6.07 16 4 O -0.51 -7.19 16.74 -18.75 -0.31 -7.51 16 5 O -0.51 -4.85 13.26 -39.28 -0.52 -5.37 16 6 C -0.10 -1.14 4.01 -26.69 -0.11 -1.25 16 7 C -0.14 -1.64 5.74 -26.61 -0.15 -1.79 16 8 C 0.08 1.21 4.75 -3.71 -0.02 1.19 16 9 N -0.61 -9.77 2.41 -173.82 -0.42 -10.19 16 10 C 0.57 11.39 7.40 -12.31 -0.09 11.29 16 11 O -0.55 -12.24 16.20 5.32 0.09 -12.15 16 12 C -0.11 -2.43 5.35 -105.04 -0.56 -2.99 16 13 C -0.18 -3.97 9.61 -38.92 -0.37 -4.35 16 14 C -0.11 -2.52 10.01 -39.72 -0.40 -2.92 16 15 C -0.14 -3.38 8.71 -38.81 -0.34 -3.72 16 16 C 0.10 2.43 5.59 -106.87 -0.60 1.84 16 17 C -0.46 -11.09 9.06 -37.73 -0.34 -11.44 16 18 H 0.08 1.85 7.90 -52.49 -0.41 1.43 16 19 C 0.08 1.76 5.17 -17.34 -0.09 1.67 16 20 N -0.79 -18.88 10.81 55.55 0.60 -18.28 16 21 Si 0.91 17.38 29.59 -169.99 -5.03 12.35 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 C -0.20 -4.41 7.10 -38.44 -0.27 -4.68 16 26 C 0.13 1.76 5.05 -3.67 -0.02 1.75 16 27 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.07 5.97 -51.93 -0.31 0.76 16 30 H 0.41 1.99 9.10 45.56 0.41 2.41 16 31 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 32 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.91 6.33 -51.93 -0.33 0.58 16 35 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.13 2.19 4.32 -51.93 -0.22 1.96 16 37 H 0.10 2.07 7.97 -52.49 -0.42 1.65 16 38 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.13 3.11 6.00 -52.49 -0.31 2.80 16 40 H 0.28 6.11 8.30 -40.82 -0.34 5.77 16 41 H 0.11 2.16 5.83 -52.49 -0.31 1.85 16 42 H 0.10 1.58 7.00 -51.93 -0.36 1.21 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -28.83 346.98 -8.07 -36.89 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -4.77 Total: 10.59 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.93 Total: -11.57 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: 0.18 Total: -28.46 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.75 Total: -25.03 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.83 -8.07 -36.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263180458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.844 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds