Wall clock time and date at job start Tue Mar 31 2020 12:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.49991 * 2 1 4 4 O 1.20826 * 120.00608 * 119.99756 * 3 2 1 5 5 O 1.34238 * 119.99984 * 300.00409 * 3 2 1 6 6 C 1.53036 * 109.50068 * 120.06651 * 2 1 3 7 7 C 1.53035 * 109.54072 * 58.58401 * 6 2 1 8 8 C 1.53197 * 109.31024 * 61.36620 * 7 6 2 9 9 N 1.46915 * 108.77508 * 305.36781 * 8 7 6 10 10 C 1.34779 * 120.62973 * 233.62780 * 9 8 7 11 11 O 1.21549 * 120.00088 * 174.63404 * 10 9 8 12 12 C 1.47887 * 120.00113 * 354.63471 * 10 9 8 13 13 C 1.39922 * 120.02333 * 146.57066 * 12 10 9 14 14 C 1.38335 * 120.35591 * 180.02562 * 13 12 10 15 15 C 1.37749 * 120.41099 * 359.97083 * 14 13 12 16 16 C 1.40749 * 120.04106 * 0.02562 * 15 14 13 17 17 C 1.41436 * 120.17849 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00211 * 157.00961 * 17 16 15 19 19 C 1.39946 * 119.99948 * 337.01486 * 17 16 15 20 20 N 1.30823 * 119.99952 * 342.87389 * 19 17 16 21 21 Si 1.86797 * 119.99806 * 162.87670 * 19 17 16 22 22 H 1.48496 * 109.47355 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47178 * 119.99799 * 21 19 17 24 24 H 1.48507 * 109.47388 * 239.99741 * 21 19 17 25 25 C 1.38993 * 120.02450 * 326.30117 * 12 10 9 26 26 C 1.46991 * 118.75861 * 53.60847 * 9 8 7 27 27 H 1.08998 * 109.46809 * 59.99837 * 1 2 3 28 28 H 1.08998 * 109.47049 * 299.99667 * 1 2 3 29 29 H 1.08998 * 109.47141 * 180.02562 * 1 2 3 30 30 H 0.96696 * 116.99964 * 180.02562 * 5 3 2 31 31 H 1.09002 * 109.46627 * 178.61086 * 6 2 1 32 32 H 1.09004 * 109.45991 * 298.56492 * 6 2 1 33 33 H 1.09004 * 109.50461 * 181.31950 * 7 6 2 34 34 H 1.09004 * 109.50053 * 301.42016 * 7 6 2 35 35 H 1.08995 * 109.58219 * 65.15738 * 8 7 6 36 36 H 1.08999 * 109.58504 * 185.57881 * 8 7 6 37 37 H 1.07997 * 119.82165 * 0.02562 * 13 12 10 38 38 H 1.08003 * 119.79170 * 179.97438 * 14 13 12 39 39 H 1.08002 * 119.97883 * 179.97438 * 15 14 13 40 40 H 0.96998 * 119.99965 * 179.97438 * 20 19 17 41 41 H 1.07993 * 120.20566 * 359.97438 * 25 12 10 42 42 H 1.08997 * 109.63457 * 186.61475 * 26 9 8 43 43 H 1.08997 * 109.58097 * 66.17157 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4205 0.0000 4 8 2.7278 1.8155 0.9062 5 8 1.7091 2.2473 -1.0067 6 6 2.0409 -0.7227 1.2485 7 6 1.5031 -2.1554 1.2666 8 6 2.0141 -2.9040 0.0315 9 7 1.6516 -2.1385 -1.1689 10 6 0.9741 -2.7224 -2.1771 11 8 0.5949 -2.0564 -3.1206 12 6 0.6919 -4.1735 -2.1355 13 6 -0.4922 -4.6727 -2.6891 14 6 -0.7634 -6.0287 -2.6536 15 6 0.1290 -6.9032 -2.0736 16 6 1.3254 -6.4196 -1.5117 17 6 2.2434 -7.3149 -0.9149 18 1 3.2836 -7.0396 -0.8223 19 6 1.8039 -8.5575 -0.4446 20 7 0.5283 -8.7669 -0.2436 21 14 3.0387 -9.9171 -0.1039 22 1 4.4079 -9.4305 -0.4100 23 1 2.9607 -10.3097 1.3262 24 1 2.7293 -11.0923 -0.9574 25 6 1.6054 -5.0432 -1.5515 26 6 2.0413 -0.7235 -1.2498 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.0556 3.1490 -0.9631 31 1 3.1306 -0.7440 1.2355 32 1 1.6988 -0.1952 2.1389 33 1 1.8481 -2.6623 2.1678 34 1 0.4133 -2.1352 1.2546 35 1 3.0980 -3.0042 0.0876 36 1 1.5555 -3.8918 -0.0127 37 1 -1.1983 -3.9956 -3.1467 38 1 -1.6804 -6.4041 -3.0833 39 1 -0.0899 -7.9606 -2.0493 40 1 0.2236 -9.6283 0.0821 41 1 2.5228 -4.6630 -1.1272 42 1 1.6008 -0.2725 -2.1390 43 1 3.1275 -0.6459 -1.2983 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263180458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:23 Heat of formation + Delta-G solvation = -121.273578 kcal Electronic energy + Delta-G solvation = -27049.744678 eV Core-core repulsion = 23251.733047 eV Total energy + Delta-G solvation = -3798.011632 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15863 -41.02875 -39.13693 -38.44272 -37.16492 -35.57154 -34.89792 -32.84987 -31.80651 -31.48675 -28.23493 -27.25499 -26.79657 -25.64586 -23.83796 -23.05369 -22.54979 -21.07477 -19.90546 -19.01312 -18.94980 -18.02643 -17.47417 -17.26264 -17.03115 -16.55704 -16.40150 -16.04971 -15.74401 -15.17285 -15.06143 -14.83732 -14.55154 -14.49860 -14.22633 -14.08896 -13.66394 -13.46626 -13.26237 -13.00321 -12.85168 -12.79139 -12.62209 -12.54239 -12.35479 -12.19289 -12.04272 -12.01616 -11.80751 -11.59419 -11.48082 -11.31775 -11.03228 -10.71053 -9.75309 -9.41273 -9.32482 -8.62001 -6.33654 0.48477 0.94790 1.04796 1.44411 1.50919 1.58212 1.79257 2.00708 2.18056 2.24310 2.76503 3.34268 3.59186 3.67458 3.73822 3.79622 3.98420 4.10153 4.30303 4.39315 4.46438 4.48871 4.58445 4.60479 4.63323 4.72860 4.85738 4.87500 4.97149 4.99884 5.05338 5.11535 5.12291 5.19258 5.34228 5.37890 5.45955 5.53576 5.59775 5.83123 6.03237 6.05281 6.23290 6.35562 6.64353 6.92074 6.94007 6.96393 7.15783 8.33629 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.003545 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.467749 B = 7895.907103 C = 8749.428518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 C 0.503 3.497 4 O -0.535 6.535 5 O -0.508 6.508 6 C -0.093 4.093 7 C -0.129 4.129 8 C 0.080 3.920 9 N -0.597 5.597 10 C 0.570 3.430 11 O -0.580 6.580 12 C -0.117 4.117 13 C -0.192 4.192 14 C -0.112 4.112 15 C -0.166 4.166 16 C 0.076 3.924 17 C -0.487 4.487 18 H 0.083 0.917 19 C 0.040 3.960 20 N -0.820 5.820 21 Si 0.978 3.022 22 H -0.257 1.257 23 H -0.267 1.267 24 H -0.270 1.270 25 C -0.193 4.193 26 C 0.126 3.874 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.429 0.571 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.289 0.711 41 H 0.125 0.875 42 H 0.091 0.909 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 12.483 4.557 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.064 4.064 3 C 0.345 3.655 4 O -0.425 6.425 5 O -0.321 6.321 6 C -0.131 4.131 7 C -0.167 4.167 8 C -0.041 4.041 9 N -0.328 5.328 10 C 0.361 3.639 11 O -0.461 6.461 12 C -0.120 4.120 13 C -0.212 4.212 14 C -0.131 4.131 15 C -0.185 4.185 16 C 0.073 3.927 17 C -0.516 4.516 18 H 0.101 0.899 19 C -0.176 4.176 20 N -0.446 5.446 21 Si 0.799 3.201 22 H -0.181 1.181 23 H -0.191 1.191 24 H -0.194 1.194 25 C -0.213 4.213 26 C 0.003 3.997 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.291 0.709 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.338 12.395 4.389 13.356 hybrid contribution 0.414 -0.117 0.018 0.431 sum 2.752 12.278 4.408 13.332 Atomic orbital electron populations 1.21823 0.90920 1.03361 1.03183 1.20867 0.98872 0.87875 0.98782 1.23096 0.75798 0.88218 0.78393 1.90707 1.36829 1.77598 1.37374 1.84546 1.71750 1.28769 1.47074 1.21460 1.01492 0.95000 0.95144 1.21993 1.01651 0.94851 0.98187 1.22607 1.01397 0.96991 0.83140 1.47861 1.55728 1.10755 1.18494 1.18722 0.76008 0.87636 0.81533 1.90652 1.53941 1.65794 1.35750 1.19478 0.97621 0.91302 1.03570 1.20568 0.98128 0.95214 1.07292 1.20881 0.99139 0.93095 0.99946 1.21605 0.96604 0.99381 1.00946 1.17873 0.92877 0.91755 0.90155 1.19843 0.96444 1.00203 1.35104 0.89933 1.26673 0.97382 1.01200 0.92358 1.69842 1.17082 1.25214 1.32443 0.85211 0.79070 0.77218 0.78598 1.18085 1.19145 1.19445 1.21498 1.00692 0.92603 1.06512 1.21545 1.00166 0.80630 0.97322 0.91700 0.90505 0.91682 0.70883 0.90500 0.89917 0.88023 0.91269 0.89814 0.87892 0.87887 0.86625 0.87013 0.90036 0.85751 0.89054 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 7.92 71.98 0.57 -2.45 16 2 C -0.06 -1.37 0.71 -52.85 -0.04 -1.41 16 3 C 0.50 10.66 6.93 71.23 0.49 11.15 16 4 O -0.54 -13.62 16.74 21.96 0.37 -13.25 16 5 O -0.51 -8.42 13.26 -51.49 -0.68 -9.10 16 6 C -0.09 -1.91 4.01 30.62 0.12 -1.79 16 7 C -0.13 -2.83 5.74 30.67 0.18 -2.65 16 8 C 0.08 2.21 4.75 86.37 0.41 2.62 16 9 N -0.60 -18.59 2.41 -822.12 -1.98 -20.58 16 10 C 0.57 22.66 7.40 86.80 0.64 23.30 16 11 O -0.58 -25.81 16.20 -3.87 -0.06 -25.87 16 12 C -0.12 -5.09 5.35 -20.13 -0.11 -5.20 16 13 C -0.19 -8.59 9.61 22.70 0.22 -8.37 16 14 C -0.11 -5.07 10.01 22.18 0.22 -4.85 16 15 C -0.17 -8.20 8.71 22.77 0.20 -8.00 16 16 C 0.08 3.74 5.59 -21.32 -0.12 3.62 16 17 C -0.49 -23.74 9.06 23.47 0.21 -23.53 16 18 H 0.08 3.84 7.90 -2.91 -0.02 3.81 16 19 C 0.04 1.82 5.17 85.26 0.44 2.26 16 20 N -0.82 -39.55 10.81 21.83 0.24 -39.31 16 21 Si 0.98 35.26 29.59 68.60 2.03 37.29 16 22 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 23 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 24 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 25 C -0.19 -8.54 7.10 23.01 0.16 -8.37 16 26 C 0.13 3.30 5.05 86.35 0.44 3.74 16 27 H 0.06 1.51 8.11 -2.39 -0.02 1.49 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.66 5.97 -2.39 -0.01 1.65 16 30 H 0.43 3.03 9.10 -74.06 -0.67 2.35 16 31 H 0.08 1.55 8.13 -2.39 -0.02 1.53 16 32 H 0.08 1.59 8.07 -2.38 -0.02 1.57 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.61 6.33 -2.39 -0.02 1.59 16 35 H 0.08 2.06 8.04 -2.39 -0.02 2.04 16 36 H 0.10 3.46 4.32 -2.39 -0.01 3.45 16 37 H 0.10 4.43 7.97 -2.91 -0.02 4.40 16 38 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.11 5.76 6.00 -2.91 -0.02 5.75 16 40 H 0.29 12.60 8.30 -92.71 -0.77 11.83 16 41 H 0.12 4.94 5.83 -2.91 -0.02 4.92 16 42 H 0.09 2.68 7.00 -2.39 -0.02 2.66 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -62.04 346.98 4.33 -57.71 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.38 Total: 33.03 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 4.04 Total: -19.92 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -1.75 Total: -59.89 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.38 Total: -48.23 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Total: -62.04 4.33 -57.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263180458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.567 kcal (2) G-P(sol) polarization free energy of solvation -62.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds