Wall clock time and date at job start Tue Mar 31 2020 11:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48501 * 109.47226 * 239.99812 * 3 2 1 5 5 H 1.48491 * 109.47184 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46796 * 120.00120 * 3 2 1 7 7 C 1.37877 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00730 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46982 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46982 * 179.97438 * 11 10 9 13 13 C 1.38328 * 119.99845 * 179.97438 * 12 11 10 14 14 N 1.32495 * 120.57166 * 5.25732 * 13 12 11 15 15 C 1.32077 * 121.16831 * 179.79779 * 14 13 12 16 16 N 1.31281 * 122.20482 * 0.49986 * 15 14 13 17 17 C 1.34025 * 120.96117 * 359.76323 * 16 15 14 18 18 S 1.75514 * 131.24706 * 179.97438 * 17 16 15 19 19 C 1.75594 * 92.47370 * 179.97438 * 18 17 16 20 20 C 1.33385 * 111.38115 * 359.97438 * 19 18 17 21 21 C 1.39313 * 119.14840 * 359.97150 * 17 16 15 22 22 C 1.52314 * 123.39498 * 180.10604 * 20 19 18 23 23 C 1.52968 * 108.85767 * 342.74207 * 22 20 19 24 24 C 1.53172 * 109.08438 * 50.78161 * 23 22 20 25 25 C 1.51879 * 124.29061 * 180.02562 * 19 18 17 26 26 H 0.96998 * 119.99606 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46656 * 60.00196 * 9 7 2 28 28 H 1.08999 * 109.46846 * 300.00034 * 9 7 2 29 29 H 1.08999 * 109.47214 * 299.99631 * 10 9 7 30 30 H 1.09001 * 109.47411 * 60.00481 * 10 9 7 31 31 H 1.09003 * 109.47278 * 300.00036 * 11 10 9 32 32 H 1.09001 * 109.46669 * 60.00009 * 11 10 9 33 33 H 0.96998 * 120.00412 * 0.02562 * 12 11 10 34 34 H 1.08000 * 118.89934 * 180.26486 * 15 14 13 35 35 H 1.08999 * 109.57649 * 102.55091 * 22 20 19 36 36 H 1.09000 * 109.57534 * 222.93523 * 22 20 19 37 37 H 1.09000 * 109.55271 * 290.89453 * 23 22 20 38 38 H 1.08998 * 109.59218 * 170.69166 * 23 22 20 39 39 H 1.08999 * 109.56705 * 169.78667 * 24 23 22 40 40 H 1.09002 * 109.65495 * 49.50993 * 24 23 22 41 41 H 1.08997 * 109.58123 * 283.06724 * 25 19 18 42 42 H 1.09006 * 109.58475 * 43.46595 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9872 -0.0012 12 7 2.4322 -6.1006 -0.0018 13 6 1.9711 -7.4048 -0.0019 14 7 0.6755 -7.6615 -0.1060 15 6 0.2226 -8.9022 -0.1113 16 7 1.0211 -9.9389 -0.0052 17 6 2.3468 -9.7792 0.1097 18 16 3.6443 -10.9508 0.2661 19 6 4.8712 -9.6965 0.3352 20 6 4.3295 -8.4809 0.2452 21 6 2.8772 -8.4909 0.1153 22 6 5.1456 -7.1952 0.2736 23 6 6.5332 -7.5028 0.8391 24 6 7.1272 -8.6975 0.0866 25 6 6.3596 -9.9625 0.4780 26 1 -0.4849 0.8401 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 -0.8905 30 1 2.8719 -3.6044 0.8895 31 1 0.8532 -5.0452 0.8886 32 1 0.8539 -5.0446 -0.8914 33 1 3.3859 -5.9235 -0.0014 34 1 -0.8404 -9.0694 -0.2023 35 1 5.2427 -6.8018 -0.7382 36 1 4.6480 -6.4607 0.9068 37 1 6.4500 -7.7444 1.8988 38 1 7.1800 -6.6346 0.7130 39 1 8.1779 -8.8110 0.3532 40 1 7.0387 -8.5349 -0.9875 41 1 6.5868 -10.2220 1.5120 42 1 6.6489 -10.7831 -0.1786 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264244185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:37 Heat of formation + Delta-G solvation = 37.213422 kcal Electronic energy + Delta-G solvation = -23382.035159 eV Core-core repulsion = 20065.941661 eV Total energy + Delta-G solvation = -3316.093497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05869 -38.61523 -36.87311 -34.31811 -34.00967 -32.44433 -31.38644 -30.74016 -29.09039 -26.85956 -24.71293 -24.44078 -23.07174 -22.57431 -22.03076 -20.47114 -19.02712 -18.35747 -17.48937 -16.92352 -16.30438 -15.84082 -15.51297 -14.91432 -14.67023 -14.55848 -14.46097 -14.27908 -14.15928 -13.89118 -13.23718 -13.02622 -12.89225 -12.48456 -12.32294 -11.88326 -11.69493 -11.48487 -11.33465 -11.21041 -11.06436 -10.85367 -10.80739 -10.65089 -10.62370 -10.55501 -9.90094 -9.57481 -9.28159 -9.20845 -9.10200 -8.51822 -8.41103 -7.71238 -6.05882 -4.09330 0.48735 1.05074 1.19427 1.73443 1.98676 3.10383 3.29064 3.34189 3.35919 3.82140 4.10839 4.24160 4.35243 4.40725 4.50895 4.56138 4.63084 4.75789 4.91683 5.08099 5.15266 5.16706 5.29934 5.34435 5.41975 5.52739 5.57232 5.64185 5.69402 5.71743 5.88537 5.96343 6.05652 6.09768 6.18472 6.50816 6.57973 6.69834 6.90653 7.13237 7.50234 7.57794 7.69954 7.92153 8.27344 8.32977 8.96829 9.55069 11.05321 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.002951 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.832251 B = 9484.566622 C =11111.057939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.123 4.123 11 C 0.120 3.880 12 N -0.695 5.695 13 C 0.489 3.511 14 N -0.583 5.583 15 C 0.359 3.641 16 N -0.545 5.545 17 C 0.121 3.879 18 S 0.145 5.855 19 C -0.189 4.189 20 C -0.054 4.054 21 C -0.236 4.236 22 C -0.073 4.073 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.043 4.043 26 H 0.262 0.738 27 H 0.020 0.980 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.410 0.590 34 H 0.201 0.799 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.187 -21.788 0.776 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.161 4.161 11 C -0.003 4.003 12 N -0.327 5.327 13 C 0.235 3.765 14 N -0.310 5.310 15 C 0.065 3.935 16 N -0.268 5.268 17 C -0.128 4.128 18 S 0.407 5.593 19 C -0.306 4.306 20 C -0.066 4.066 21 C -0.254 4.254 22 C -0.112 4.112 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.082 4.082 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.251 0.749 34 H 0.217 0.783 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.014 -23.259 0.764 25.746 hybrid contribution 1.227 2.646 -0.007 2.916 sum 12.240 -20.614 0.757 23.986 Atomic orbital electron populations 1.69952 1.06056 1.26866 1.50331 1.25021 0.94861 0.99295 0.95194 0.86640 0.79581 0.83071 0.78608 1.20225 1.21231 1.20223 1.21155 0.92950 0.90934 1.51269 0.92709 1.19002 0.93734 0.90647 0.97721 1.21930 0.99952 0.93404 1.00859 1.21790 0.91639 0.84365 1.02495 1.45447 1.10555 1.01993 1.74755 1.18536 0.88054 0.85151 0.84721 1.67952 1.12920 1.24795 1.25345 1.24648 0.99931 0.81496 0.87386 1.68115 1.01123 1.35338 1.22234 1.23310 0.96086 0.94782 0.98587 1.83960 0.92309 1.05995 1.77057 1.24277 0.99481 0.95203 1.11598 1.20042 0.90120 0.95223 1.01199 1.19991 0.94182 0.94336 1.16857 1.20795 0.94964 0.93242 1.02215 1.21542 0.95171 0.98611 1.00262 1.21580 0.99072 0.93898 1.00971 1.20361 0.86740 0.98786 1.02354 0.92819 0.96177 0.96222 0.92723 0.92757 0.91415 0.91159 0.74913 0.78276 0.89702 0.90096 0.91246 0.90682 0.90817 0.91245 0.90076 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.12 2.02 5.73 -4.04 -0.02 2.00 16 12 N -0.70 -10.24 5.62 -59.79 -0.34 -10.58 16 13 C 0.49 7.55 7.57 -154.52 -1.17 6.38 16 14 N -0.58 -9.20 9.67 -13.41 -0.13 -9.33 16 15 C 0.36 4.96 12.26 -92.35 -1.13 3.83 16 16 N -0.55 -8.04 10.48 -13.46 -0.14 -8.18 16 17 C 0.12 1.75 7.67 -16.19 -0.12 1.62 16 18 S 0.15 1.63 23.18 -107.50 -2.49 -0.87 16 19 C -0.19 -1.96 6.29 -35.42 -0.22 -2.18 16 20 C -0.05 -0.63 5.93 -102.49 -0.61 -1.24 16 21 C -0.24 -3.36 6.05 -105.06 -0.64 -4.00 16 22 C -0.07 -0.69 4.56 -27.10 -0.12 -0.81 16 23 C -0.12 -0.87 5.91 -26.66 -0.16 -1.03 16 24 C -0.12 -0.75 5.94 -26.62 -0.16 -0.91 16 25 C -0.04 -0.31 6.24 -27.27 -0.17 -0.48 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.41 5.24 4.60 -40.82 -0.19 5.05 16 34 H 0.20 1.99 8.06 -52.49 -0.42 1.56 16 35 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.08 0.80 6.40 -51.93 -0.33 0.47 16 37 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -31.60 352.89 -13.26 -44.85 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.97 Total: 0.26 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -5.22 Total: -11.97 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.13 Total: -53.77 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.49 Total: -0.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.60 -13.26 -44.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264244185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.067 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds