Wall clock time and date at job start Tue Mar 31 2020 11:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48501 * 109.47226 * 239.99812 * 3 2 1 5 5 H 1.48491 * 109.47184 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46796 * 120.00120 * 3 2 1 7 7 C 1.37877 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00730 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46982 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46982 * 179.97438 * 11 10 9 13 13 C 1.38328 * 119.99845 * 179.97438 * 12 11 10 14 14 N 1.32495 * 120.57166 * 5.25732 * 13 12 11 15 15 C 1.32077 * 121.16831 * 179.79779 * 14 13 12 16 16 N 1.31281 * 122.20482 * 0.49986 * 15 14 13 17 17 C 1.34025 * 120.96117 * 359.76323 * 16 15 14 18 18 S 1.75514 * 131.24706 * 179.97438 * 17 16 15 19 19 C 1.75594 * 92.47370 * 179.97438 * 18 17 16 20 20 C 1.33385 * 111.38115 * 359.97438 * 19 18 17 21 21 C 1.39313 * 119.14840 * 359.97150 * 17 16 15 22 22 C 1.52314 * 123.39498 * 180.10604 * 20 19 18 23 23 C 1.52968 * 108.85767 * 342.74207 * 22 20 19 24 24 C 1.53172 * 109.08438 * 50.78161 * 23 22 20 25 25 C 1.51879 * 124.29061 * 180.02562 * 19 18 17 26 26 H 0.96998 * 119.99606 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46656 * 60.00196 * 9 7 2 28 28 H 1.08999 * 109.46846 * 300.00034 * 9 7 2 29 29 H 1.08999 * 109.47214 * 299.99631 * 10 9 7 30 30 H 1.09001 * 109.47411 * 60.00481 * 10 9 7 31 31 H 1.09003 * 109.47278 * 300.00036 * 11 10 9 32 32 H 1.09001 * 109.46669 * 60.00009 * 11 10 9 33 33 H 0.96998 * 120.00412 * 0.02562 * 12 11 10 34 34 H 1.08000 * 118.89934 * 180.26486 * 15 14 13 35 35 H 1.08999 * 109.57649 * 102.55091 * 22 20 19 36 36 H 1.09000 * 109.57534 * 222.93523 * 22 20 19 37 37 H 1.09000 * 109.55271 * 290.89453 * 23 22 20 38 38 H 1.08998 * 109.59218 * 170.69166 * 23 22 20 39 39 H 1.08999 * 109.56705 * 169.78667 * 24 23 22 40 40 H 1.09002 * 109.65495 * 49.50993 * 24 23 22 41 41 H 1.08997 * 109.58123 * 283.06724 * 25 19 18 42 42 H 1.09006 * 109.58475 * 43.46595 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9872 -0.0012 12 7 2.4322 -6.1006 -0.0018 13 6 1.9711 -7.4048 -0.0019 14 7 0.6755 -7.6615 -0.1060 15 6 0.2226 -8.9022 -0.1113 16 7 1.0211 -9.9389 -0.0052 17 6 2.3468 -9.7792 0.1097 18 16 3.6443 -10.9508 0.2661 19 6 4.8712 -9.6965 0.3352 20 6 4.3295 -8.4809 0.2452 21 6 2.8772 -8.4909 0.1153 22 6 5.1456 -7.1952 0.2736 23 6 6.5332 -7.5028 0.8391 24 6 7.1272 -8.6975 0.0866 25 6 6.3596 -9.9625 0.4780 26 1 -0.4849 0.8401 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 -0.8905 30 1 2.8719 -3.6044 0.8895 31 1 0.8532 -5.0452 0.8886 32 1 0.8539 -5.0446 -0.8914 33 1 3.3859 -5.9235 -0.0014 34 1 -0.8404 -9.0694 -0.2023 35 1 5.2427 -6.8018 -0.7382 36 1 4.6480 -6.4607 0.9068 37 1 6.4500 -7.7444 1.8988 38 1 7.1800 -6.6346 0.7130 39 1 8.1779 -8.8110 0.3532 40 1 7.0387 -8.5349 -0.9875 41 1 6.5868 -10.2220 1.5120 42 1 6.6489 -10.7831 -0.1786 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264244185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:36 Heat of formation + Delta-G solvation = 21.371913 kcal Electronic energy + Delta-G solvation = -23382.722098 eV Core-core repulsion = 20065.941661 eV Total energy + Delta-G solvation = -3316.780437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10550 -39.37154 -38.16218 -35.77800 -35.16535 -34.03817 -32.56380 -31.70601 -30.10024 -28.48637 -26.02827 -25.37529 -24.26657 -23.81486 -22.80632 -22.10082 -19.90182 -19.33515 -18.74462 -18.30164 -17.74631 -16.81951 -16.69313 -16.52561 -16.01657 -15.73092 -15.62893 -15.24345 -14.82082 -14.66832 -14.31812 -14.09748 -13.95470 -13.74673 -13.71991 -13.57031 -12.88859 -12.58411 -12.56885 -12.50373 -12.40626 -12.16747 -12.06019 -11.73609 -11.58762 -11.52566 -11.38774 -11.29252 -11.22633 -10.55013 -10.30939 -10.24638 -9.50565 -8.73263 -8.19814 -6.31285 -0.51120 0.07108 0.11432 0.83650 1.06781 1.41650 1.44329 1.52200 1.93467 2.41928 2.72362 3.14046 3.21988 3.27253 3.42387 3.62987 3.80934 3.97660 4.07494 4.10891 4.18565 4.20033 4.25304 4.47239 4.51899 4.56655 4.68876 4.84563 4.88793 4.91838 4.96844 5.01364 5.12435 5.15223 5.20641 5.29179 5.42006 5.45102 5.49236 5.59581 5.68990 5.83036 5.91026 6.22243 6.40505 6.85536 7.17967 7.38285 8.91975 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.002951 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.832251 B = 9484.566622 C =11111.057939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.028 3.972 10 C -0.105 4.105 11 C 0.138 3.862 12 N -0.691 5.691 13 C 0.473 3.527 14 N -0.607 5.607 15 C 0.349 3.651 16 N -0.555 5.555 17 C 0.087 3.913 18 S 0.174 5.826 19 C -0.177 4.177 20 C -0.075 4.075 21 C -0.242 4.242 22 C -0.073 4.073 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.045 4.045 26 H 0.263 0.737 27 H -0.006 1.006 28 H -0.006 1.006 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.419 0.581 34 H 0.230 0.770 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.248 -22.498 0.929 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.010 4.010 10 C -0.143 4.143 11 C 0.015 3.985 12 N -0.326 5.326 13 C 0.220 3.780 14 N -0.335 5.335 15 C 0.056 3.944 16 N -0.278 5.278 17 C -0.161 4.161 18 S 0.436 5.564 19 C -0.293 4.293 20 C -0.087 4.087 21 C -0.260 4.260 22 C -0.113 4.113 23 C -0.154 4.154 24 C -0.152 4.152 25 C -0.084 4.084 26 H 0.072 0.928 27 H 0.013 0.987 28 H 0.012 0.988 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.262 0.738 34 H 0.246 0.754 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.103 -24.013 0.918 27.863 hybrid contribution 0.286 2.729 -0.047 2.744 sum 14.389 -21.285 0.871 25.707 Atomic orbital electron populations 1.70099 1.07883 1.27870 1.51529 1.25994 0.95733 1.03447 0.94739 0.85496 0.78239 0.78036 0.79265 1.19056 1.21164 1.19025 1.21651 0.93726 0.92064 1.50705 0.91637 1.18888 0.94261 0.92569 0.95233 1.21633 0.98676 0.92145 1.01869 1.21343 0.91460 0.84327 1.01410 1.45172 1.10525 1.01309 1.75564 1.18727 0.88495 0.85461 0.85312 1.67961 1.13494 1.25919 1.26103 1.25241 1.01215 0.80900 0.87036 1.68175 1.01620 1.35625 1.22331 1.23854 0.96637 0.96168 0.99423 1.83827 0.91142 1.05363 1.76073 1.24820 1.00993 0.94419 1.09109 1.20240 0.89068 0.96755 1.02619 1.20249 0.95538 0.93849 1.16361 1.20849 0.95904 0.92045 1.02457 1.21564 0.93942 0.99706 1.00179 1.21599 1.00097 0.92835 1.00674 1.20583 0.84217 0.99860 1.03741 0.92785 0.98739 0.98764 0.91654 0.91621 0.92570 0.92364 0.73811 0.75398 0.89374 0.90891 0.91293 0.89403 0.88514 0.91495 0.88559 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 8 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.11 -4.02 5.27 30.59 0.16 -3.86 16 11 C 0.14 4.80 5.73 86.38 0.49 5.29 16 12 N -0.69 -20.52 5.62 -343.06 -1.93 -22.45 16 13 C 0.47 14.84 7.57 133.96 1.01 15.86 16 14 N -0.61 -19.66 9.67 -196.35 -1.90 -21.56 16 15 C 0.35 9.79 12.26 180.95 2.22 12.01 16 16 N -0.55 -16.42 10.48 -196.51 -2.06 -18.48 16 17 C 0.09 2.49 7.67 84.62 0.65 3.14 16 18 S 0.17 3.65 23.18 -56.49 -1.31 2.34 16 19 C -0.18 -3.29 6.29 24.96 0.16 -3.13 16 20 C -0.08 -1.67 5.93 -18.48 -0.11 -1.78 16 21 C -0.24 -6.87 6.05 -20.15 -0.12 -6.99 16 22 C -0.07 -1.28 4.56 30.36 0.14 -1.14 16 23 C -0.12 -1.41 5.91 30.64 0.18 -1.22 16 24 C -0.11 -1.07 5.94 30.67 0.18 -0.89 16 25 C -0.04 -0.49 6.24 30.24 0.19 -0.30 16 26 H 0.26 15.02 8.31 -92.71 -0.77 14.24 16 27 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.42 10.56 4.60 -92.71 -0.43 10.13 16 34 H 0.23 4.55 8.06 -2.91 -0.02 4.53 16 35 H 0.09 1.45 8.10 -2.39 -0.02 1.43 16 36 H 0.07 1.37 6.40 -2.39 -0.02 1.36 16 37 H 0.07 0.85 8.10 -2.39 -0.02 0.83 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.70 8.11 -2.39 -0.02 0.68 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -69.12 352.89 1.72 -67.40 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.61 Total: 14.37 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 6.00 Total: -10.78 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -5.60 Total: -118.63 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.31 Total: 2.34 kcal Total: -69.12 1.72 -67.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264244185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.772 kcal (2) G-P(sol) polarization free energy of solvation -69.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds