Wall clock time and date at job start Tue Mar 31 2020 11:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99801 * 2 1 4 4 H 1.48503 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47061 * 299.99906 * 3 2 1 6 6 H 1.48503 * 109.47075 * 60.00007 * 3 2 1 7 7 C 1.37881 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99537 * 269.99553 * 10 9 7 12 12 C 1.52998 * 109.47320 * 269.99999 * 11 10 9 13 13 C 1.52997 * 117.50231 * 243.62602 * 12 11 10 14 14 C 1.52998 * 117.50058 * 174.99994 * 12 11 10 15 15 C 1.34777 * 120.00199 * 90.00203 * 10 9 7 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 10 9 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 10 9 18 18 O 1.42899 * 109.46876 * 179.72354 * 17 15 10 19 19 C 1.35663 * 116.99498 * 179.97438 * 18 17 15 20 20 C 1.39075 * 119.88699 * 359.72835 * 19 18 17 21 21 C 1.37127 * 120.11326 * 179.72287 * 20 19 18 22 22 C 1.40039 * 119.88202 * 0.56917 * 21 20 19 23 23 C 1.46854 * 120.11277 * 179.68054 * 22 21 20 24 24 O 1.21294 * 119.99925 * 0.02562 * 23 22 21 25 25 C 1.40043 * 119.77137 * 359.70183 * 22 21 20 26 26 C 1.37117 * 119.88150 * 0.02562 * 25 22 21 27 27 H 0.96991 * 119.99957 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46867 * 59.99962 * 9 7 2 29 29 H 1.09005 * 109.46937 * 299.99970 * 9 7 2 30 30 H 1.08994 * 109.46996 * 30.00327 * 11 10 9 31 31 H 1.09001 * 109.46578 * 150.00190 * 11 10 9 32 32 H 1.09001 * 115.54721 * 29.33740 * 12 11 10 33 33 H 1.09000 * 117.49450 * 0.02562 * 13 12 11 34 34 H 1.08994 * 117.49954 * 145.01950 * 13 12 11 35 35 H 1.08996 * 117.50282 * 214.98430 * 14 12 11 36 36 H 1.09000 * 117.49560 * 0.02562 * 14 12 11 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 10 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 10 39 39 H 1.08001 * 119.94476 * 359.97438 * 20 19 18 40 40 H 1.07998 * 120.05806 * 180.26681 * 21 20 19 41 41 H 1.08004 * 119.99920 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.05478 * 179.97438 * 25 22 21 43 43 H 1.08002 * 119.93651 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6801 -4.1688 -1.2702 12 6 1.7498 -5.2998 -1.7130 13 6 2.3418 -6.7078 -1.8016 14 6 2.0112 -5.9352 -3.0801 15 6 2.6403 -4.1254 1.1658 16 8 2.2457 -3.6647 2.2161 17 6 3.6244 -5.2667 1.1660 18 8 3.9368 -5.6259 2.5134 19 6 4.8149 -6.6447 2.6912 20 6 5.3608 -7.2899 1.5867 21 6 6.2531 -8.3164 1.7611 22 6 6.6053 -8.7226 3.0541 23 6 7.5550 -9.8260 3.2467 24 8 8.0362 -10.3869 2.2849 25 6 6.0484 -8.0733 4.1629 26 6 5.1613 -7.0442 3.9775 27 1 -0.4849 0.8400 -0.0004 28 1 0.6249 -2.5563 -0.8920 29 1 0.6242 -2.5575 0.8881 30 1 2.6884 -3.3868 -2.0294 31 1 3.6895 -4.5588 -1.1392 32 1 0.7126 -5.2090 -1.3903 33 1 3.3941 -6.8284 -1.5439 34 1 1.6943 -7.5436 -1.5369 35 1 1.1460 -6.2627 -3.6566 36 1 2.8462 -5.5477 -3.6638 37 1 3.1870 -6.1236 0.6536 38 1 4.5350 -4.9612 0.6509 39 1 5.0846 -6.9792 0.5899 40 1 6.6797 -8.8139 0.9027 41 1 7.8251 -10.1381 4.2448 42 1 6.3165 -8.3831 5.1622 43 1 4.7316 -6.5425 4.8320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264880518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:05 Heat of formation + Delta-G solvation = -50.250760 kcal Electronic energy + Delta-G solvation = -25754.691116 eV Core-core repulsion = 21959.759265 eV Total energy + Delta-G solvation = -3794.931851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64318 -39.54237 -38.82173 -37.41670 -36.95403 -34.54286 -32.64711 -31.55387 -30.90566 -29.09194 -27.50789 -26.00749 -24.61714 -23.35584 -22.43112 -22.36569 -21.12348 -20.81593 -18.79571 -18.57851 -17.14379 -16.75906 -16.65613 -16.18941 -16.07394 -15.58489 -15.09029 -14.94411 -14.67357 -14.50686 -14.40611 -14.23990 -13.75164 -13.61196 -13.27427 -12.92615 -12.70175 -12.63568 -12.24661 -12.09645 -11.63715 -11.54050 -11.30396 -11.16728 -11.12306 -10.91998 -10.69633 -10.44063 -10.17283 -10.06206 -9.96115 -9.68385 -9.41169 -9.06232 -8.49440 -8.47699 -7.84464 -6.10508 -4.15522 0.45003 1.09015 2.21416 2.71708 3.15254 3.26492 3.34650 3.38416 3.54856 3.71478 3.94097 4.03148 4.39369 4.44560 4.51119 4.66298 4.80794 4.88053 4.89164 4.99001 5.01355 5.11635 5.14044 5.22589 5.24685 5.26611 5.32701 5.56700 5.71125 5.71734 5.86141 5.90127 5.94575 6.01689 6.06246 6.07753 6.31332 6.37236 6.88911 7.15261 7.17688 7.32832 7.41487 7.85321 8.14593 8.20852 8.77906 8.92922 9.49829 10.97761 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.003038 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.350857 B = 9215.099849 C =10392.329798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.247 3.753 10 N -0.589 5.589 11 C 0.138 3.862 12 C -0.168 4.168 13 C -0.189 4.189 14 C -0.172 4.172 15 C 0.510 3.490 16 O -0.516 6.516 17 C 0.036 3.964 18 O -0.279 6.279 19 C 0.175 3.825 20 C -0.230 4.230 21 C -0.014 4.014 22 C -0.246 4.246 23 C 0.387 3.613 24 O -0.472 6.472 25 C -0.026 4.026 26 C -0.168 4.168 27 H 0.264 0.736 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.139 0.861 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.370 -18.009 0.969 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.129 3.871 10 N -0.322 5.322 11 C 0.014 3.986 12 C -0.188 4.188 13 C -0.226 4.226 14 C -0.210 4.210 15 C 0.294 3.706 16 O -0.391 6.391 17 C -0.042 4.042 18 O -0.190 6.190 19 C 0.128 3.872 20 C -0.248 4.248 21 C -0.032 4.032 22 C -0.247 4.247 23 C 0.247 3.753 24 O -0.347 6.347 25 C -0.044 4.044 26 C -0.186 4.186 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.129 0.871 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.118 0.882 42 H 0.157 0.843 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.124 -17.772 1.170 20.486 hybrid contribution 0.344 0.993 -0.323 1.100 sum 10.468 -16.779 0.847 19.794 Atomic orbital electron populations 1.69935 1.05999 1.27033 1.50241 1.24931 0.94886 0.99262 0.94944 0.86434 0.79993 0.83310 0.77643 1.19781 1.20924 1.20824 1.21444 0.93406 0.90564 1.51351 0.92344 1.19361 0.87254 0.81745 0.98734 1.48125 1.45906 1.34822 1.03301 1.21099 0.94807 0.95058 0.87656 1.22970 1.01625 0.93642 1.00543 1.23077 1.01292 0.95358 1.02912 1.22894 1.03466 1.03983 0.90615 1.19627 0.82517 0.83434 0.84976 1.90731 1.57194 1.60441 1.30695 1.22863 0.99970 0.99038 0.82329 1.86173 1.57276 1.47222 1.28325 1.19570 0.87255 0.86031 0.94381 1.21190 1.03735 1.01333 0.98580 1.21070 0.92352 0.92910 0.96905 1.20782 1.06128 1.03607 0.94214 1.23880 0.77375 0.80012 0.93994 1.90524 1.47163 1.51054 1.45936 1.21052 0.92530 0.92417 0.98403 1.20350 1.02461 1.00622 0.95199 0.92681 0.94516 0.93676 0.88843 0.91705 0.87074 0.89115 0.88953 0.88804 0.88626 0.88974 0.89370 0.84806 0.84804 0.88214 0.84345 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.25 6.21 5.16 -5.20 -0.03 6.18 16 10 N -0.59 -11.72 2.46 -175.06 -0.43 -12.15 16 11 C 0.14 2.04 5.50 -4.04 -0.02 2.01 16 12 C -0.17 -2.13 5.97 -90.62 -0.54 -2.67 16 13 C -0.19 -1.87 9.19 -26.73 -0.25 -2.12 16 14 C -0.17 -1.74 10.25 -26.73 -0.27 -2.01 16 15 C 0.51 10.34 7.75 -10.98 -0.09 10.25 16 16 O -0.52 -13.06 16.08 -14.35 -0.23 -13.29 16 17 C 0.04 0.53 3.76 36.01 0.14 0.67 16 18 O -0.28 -4.42 9.65 -38.60 -0.37 -4.79 16 19 C 0.18 2.21 6.70 -38.96 -0.26 1.95 16 20 C -0.23 -2.45 8.99 -39.67 -0.36 -2.81 16 21 C -0.01 -0.14 9.57 -39.31 -0.38 -0.52 16 22 C -0.25 -2.23 5.87 -105.06 -0.62 -2.85 16 23 C 0.39 3.15 11.44 34.22 0.39 3.54 16 24 O -0.47 -5.68 17.16 5.55 0.10 -5.58 16 25 C -0.03 -0.21 9.77 -39.31 -0.38 -0.59 16 26 C -0.17 -1.78 9.95 -39.68 -0.39 -2.17 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 29 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 31 H 0.06 0.77 6.17 -51.93 -0.32 0.45 16 32 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.11 6.37 -51.93 -0.33 0.78 16 38 H 0.09 1.09 6.92 -51.93 -0.36 0.73 16 39 H 0.13 1.21 6.27 -52.49 -0.33 0.88 16 40 H 0.13 1.26 7.64 -52.49 -0.40 0.86 16 41 H 0.10 0.41 8.06 -52.48 -0.42 -0.02 16 42 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -34.78 371.87 -8.97 -43.75 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.88 Total: -0.34 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.48 Total: -4.39 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.31 Total: -37.43 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.51 Total: -23.67 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.78 -8.97 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264880518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.500 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds