Wall clock time and date at job start Tue Mar 31 2020 11:08:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86802 * 119.99801 * 2 1
4 4 H 1.48503 * 109.47135 * 179.97438 * 3 2 1
5 5 H 1.48493 * 109.47061 * 299.99906 * 3 2 1
6 6 H 1.48503 * 109.47075 * 60.00007 * 3 2 1
7 7 C 1.37881 * 120.00096 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99733 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00081 * 0.02562 * 7 2 1
10 10 N 1.46499 * 109.46949 * 180.02562 * 9 7 2
11 11 C 1.46506 * 119.99537 * 269.99553 * 10 9 7
12 12 C 1.52998 * 109.47320 * 269.99999 * 11 10 9
13 13 C 1.52997 * 117.50231 * 243.62602 * 12 11 10
14 14 C 1.52998 * 117.50058 * 174.99994 * 12 11 10
15 15 C 1.34777 * 120.00199 * 90.00203 * 10 9 7
16 16 O 1.21283 * 119.99750 * 359.97438 * 15 10 9
17 17 C 1.50702 * 119.99928 * 180.27479 * 15 10 9
18 18 O 1.42899 * 109.46876 * 179.72354 * 17 15 10
19 19 C 1.35663 * 116.99498 * 179.97438 * 18 17 15
20 20 C 1.39075 * 119.88699 * 359.72835 * 19 18 17
21 21 C 1.37127 * 120.11326 * 179.72287 * 20 19 18
22 22 C 1.40039 * 119.88202 * 0.56917 * 21 20 19
23 23 C 1.46854 * 120.11277 * 179.68054 * 22 21 20
24 24 O 1.21294 * 119.99925 * 0.02562 * 23 22 21
25 25 C 1.40043 * 119.77137 * 359.70183 * 22 21 20
26 26 C 1.37117 * 119.88150 * 0.02562 * 25 22 21
27 27 H 0.96991 * 119.99957 * 0.02562 * 1 2 3
28 28 H 1.09001 * 109.46867 * 59.99962 * 9 7 2
29 29 H 1.09005 * 109.46937 * 299.99970 * 9 7 2
30 30 H 1.08994 * 109.46996 * 30.00327 * 11 10 9
31 31 H 1.09001 * 109.46578 * 150.00190 * 11 10 9
32 32 H 1.09001 * 115.54721 * 29.33740 * 12 11 10
33 33 H 1.09000 * 117.49450 * 0.02562 * 13 12 11
34 34 H 1.08994 * 117.49954 * 145.01950 * 13 12 11
35 35 H 1.08996 * 117.50282 * 214.98430 * 14 12 11
36 36 H 1.09000 * 117.49560 * 0.02562 * 14 12 11
37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 10
38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 10
39 39 H 1.08001 * 119.94476 * 359.97438 * 20 19 18
40 40 H 1.07998 * 120.05806 * 180.26681 * 21 20 19
41 41 H 1.08004 * 119.99920 * 180.02562 * 23 22 21
42 42 H 1.08003 * 120.05478 * 179.97438 * 25 22 21
43 43 H 1.08002 * 119.93651 * 180.02562 * 26 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3465 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2512 -2.4992 -0.0017
10 7 2.2032 -3.6126 -0.0015
11 6 2.6801 -4.1688 -1.2702
12 6 1.7498 -5.2998 -1.7130
13 6 2.3418 -6.7078 -1.8016
14 6 2.0112 -5.9352 -3.0801
15 6 2.6403 -4.1254 1.1658
16 8 2.2457 -3.6647 2.2161
17 6 3.6244 -5.2667 1.1660
18 8 3.9368 -5.6259 2.5134
19 6 4.8149 -6.6447 2.6912
20 6 5.3608 -7.2899 1.5867
21 6 6.2531 -8.3164 1.7611
22 6 6.6053 -8.7226 3.0541
23 6 7.5550 -9.8260 3.2467
24 8 8.0362 -10.3869 2.2849
25 6 6.0484 -8.0733 4.1629
26 6 5.1613 -7.0442 3.9775
27 1 -0.4849 0.8400 -0.0004
28 1 0.6249 -2.5563 -0.8920
29 1 0.6242 -2.5575 0.8881
30 1 2.6884 -3.3868 -2.0294
31 1 3.6895 -4.5588 -1.1392
32 1 0.7126 -5.2090 -1.3903
33 1 3.3941 -6.8284 -1.5439
34 1 1.6943 -7.5436 -1.5369
35 1 1.1460 -6.2627 -3.6566
36 1 2.8462 -5.5477 -3.6638
37 1 3.1870 -6.1236 0.6536
38 1 4.5350 -4.9612 0.6509
39 1 5.0846 -6.9792 0.5899
40 1 6.6797 -8.8139 0.9027
41 1 7.8251 -10.1381 4.2448
42 1 6.3165 -8.3831 5.1622
43 1 4.7316 -6.5425 4.8320
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000264880518.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:08:05
Heat of formation + Delta-G solvation = -50.250760 kcal
Electronic energy + Delta-G solvation = -25754.691116 eV
Core-core repulsion = 21959.759265 eV
Total energy + Delta-G solvation = -3794.931851 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.146 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.64318 -39.54237 -38.82173 -37.41670 -36.95403 -34.54286 -32.64711 -31.55387
-30.90566 -29.09194 -27.50789 -26.00749 -24.61714 -23.35584 -22.43112 -22.36569
-21.12348 -20.81593 -18.79571 -18.57851 -17.14379 -16.75906 -16.65613 -16.18941
-16.07394 -15.58489 -15.09029 -14.94411 -14.67357 -14.50686 -14.40611 -14.23990
-13.75164 -13.61196 -13.27427 -12.92615 -12.70175 -12.63568 -12.24661 -12.09645
-11.63715 -11.54050 -11.30396 -11.16728 -11.12306 -10.91998 -10.69633 -10.44063
-10.17283 -10.06206 -9.96115 -9.68385 -9.41169 -9.06232 -8.49440 -8.47699
-7.84464 -6.10508 -4.15522 0.45003 1.09015 2.21416 2.71708 3.15254
3.26492 3.34650 3.38416 3.54856 3.71478 3.94097 4.03148 4.39369
4.44560 4.51119 4.66298 4.80794 4.88053 4.89164 4.99001 5.01355
5.11635 5.14044 5.22589 5.24685 5.26611 5.32701 5.56700 5.71125
5.71734 5.86141 5.90127 5.94575 6.01689 6.06246 6.07753 6.31332
6.37236 6.88911 7.15261 7.17688 7.32832 7.41487 7.85321 8.14593
8.20852 8.77906 8.92922 9.49829 10.97761
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.014975 B = 0.003038 C = 0.002694
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1869.350857 B = 9215.099849 C =10392.329798
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.062 3.938
3 Si 0.899 3.101
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.282 1.282
7 C -0.529 4.529
8 H 0.058 0.942
9 C 0.247 3.753
10 N -0.589 5.589
11 C 0.138 3.862
12 C -0.168 4.168
13 C -0.189 4.189
14 C -0.172 4.172
15 C 0.510 3.490
16 O -0.516 6.516
17 C 0.036 3.964
18 O -0.279 6.279
19 C 0.175 3.825
20 C -0.230 4.230
21 C -0.014 4.014
22 C -0.246 4.246
23 C 0.387 3.613
24 O -0.472 6.472
25 C -0.026 4.026
26 C -0.168 4.168
27 H 0.264 0.736
28 H 0.037 0.963
29 H 0.045 0.955
30 H 0.093 0.907
31 H 0.065 0.935
32 H 0.111 0.889
33 H 0.090 0.910
34 H 0.092 0.908
35 H 0.093 0.907
36 H 0.095 0.905
37 H 0.092 0.908
38 H 0.088 0.912
39 H 0.134 0.866
40 H 0.134 0.866
41 H 0.102 0.898
42 H 0.139 0.861
43 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.370 -18.009 0.969 20.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.140 4.140
3 Si 0.726 3.274
4 H -0.198 1.198
5 H -0.209 1.209
6 H -0.208 1.208
7 C -0.568 4.568
8 H 0.077 0.923
9 C 0.129 3.871
10 N -0.322 5.322
11 C 0.014 3.986
12 C -0.188 4.188
13 C -0.226 4.226
14 C -0.210 4.210
15 C 0.294 3.706
16 O -0.391 6.391
17 C -0.042 4.042
18 O -0.190 6.190
19 C 0.128 3.872
20 C -0.248 4.248
21 C -0.032 4.032
22 C -0.247 4.247
23 C 0.247 3.753
24 O -0.347 6.347
25 C -0.044 4.044
26 C -0.186 4.186
27 H 0.073 0.927
28 H 0.055 0.945
29 H 0.063 0.937
30 H 0.112 0.888
31 H 0.083 0.917
32 H 0.129 0.871
33 H 0.109 0.891
34 H 0.110 0.890
35 H 0.112 0.888
36 H 0.114 0.886
37 H 0.110 0.890
38 H 0.106 0.894
39 H 0.152 0.848
40 H 0.152 0.848
41 H 0.118 0.882
42 H 0.157 0.843
43 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 10.124 -17.772 1.170 20.486
hybrid contribution 0.344 0.993 -0.323 1.100
sum 10.468 -16.779 0.847 19.794
Atomic orbital electron populations
1.69935 1.05999 1.27033 1.50241 1.24931 0.94886 0.99262 0.94944
0.86434 0.79993 0.83310 0.77643 1.19781 1.20924 1.20824 1.21444
0.93406 0.90564 1.51351 0.92344 1.19361 0.87254 0.81745 0.98734
1.48125 1.45906 1.34822 1.03301 1.21099 0.94807 0.95058 0.87656
1.22970 1.01625 0.93642 1.00543 1.23077 1.01292 0.95358 1.02912
1.22894 1.03466 1.03983 0.90615 1.19627 0.82517 0.83434 0.84976
1.90731 1.57194 1.60441 1.30695 1.22863 0.99970 0.99038 0.82329
1.86173 1.57276 1.47222 1.28325 1.19570 0.87255 0.86031 0.94381
1.21190 1.03735 1.01333 0.98580 1.21070 0.92352 0.92910 0.96905
1.20782 1.06128 1.03607 0.94214 1.23880 0.77375 0.80012 0.93994
1.90524 1.47163 1.51054 1.45936 1.21052 0.92530 0.92417 0.98403
1.20350 1.02461 1.00622 0.95199 0.92681 0.94516 0.93676 0.88843
0.91705 0.87074 0.89115 0.88953 0.88804 0.88626 0.88974 0.89370
0.84806 0.84804 0.88214 0.84345 0.84176
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16
2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16
4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16
5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
7 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16
8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16
9 C 0.25 6.21 5.16 -5.20 -0.03 6.18 16
10 N -0.59 -11.72 2.46 -175.06 -0.43 -12.15 16
11 C 0.14 2.04 5.50 -4.04 -0.02 2.01 16
12 C -0.17 -2.13 5.97 -90.62 -0.54 -2.67 16
13 C -0.19 -1.87 9.19 -26.73 -0.25 -2.12 16
14 C -0.17 -1.74 10.25 -26.73 -0.27 -2.01 16
15 C 0.51 10.34 7.75 -10.98 -0.09 10.25 16
16 O -0.52 -13.06 16.08 -14.35 -0.23 -13.29 16
17 C 0.04 0.53 3.76 36.01 0.14 0.67 16
18 O -0.28 -4.42 9.65 -38.60 -0.37 -4.79 16
19 C 0.18 2.21 6.70 -38.96 -0.26 1.95 16
20 C -0.23 -2.45 8.99 -39.67 -0.36 -2.81 16
21 C -0.01 -0.14 9.57 -39.31 -0.38 -0.52 16
22 C -0.25 -2.23 5.87 -105.06 -0.62 -2.85 16
23 C 0.39 3.15 11.44 34.22 0.39 3.54 16
24 O -0.47 -5.68 17.16 5.55 0.10 -5.58 16
25 C -0.03 -0.21 9.77 -39.31 -0.38 -0.59 16
26 C -0.17 -1.78 9.95 -39.68 -0.39 -2.17 16
27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
28 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16
29 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16
30 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16
31 H 0.06 0.77 6.17 -51.93 -0.32 0.45 16
32 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16
33 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16
34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16
35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16
36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16
37 H 0.09 1.11 6.37 -51.93 -0.33 0.78 16
38 H 0.09 1.09 6.92 -51.93 -0.36 0.73 16
39 H 0.13 1.21 6.27 -52.49 -0.33 0.88 16
40 H 0.13 1.26 7.64 -52.49 -0.40 0.86 16
41 H 0.10 0.41 8.06 -52.48 -0.42 -0.02 16
42 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16
43 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16
LS Contribution 371.87 15.07 5.60 5.60
Total: -1.00 -34.78 371.87 -8.97 -43.75
By element:
Atomic # 1 Polarization: 5.53 SS G_CDS: -5.88 Total: -0.34 kcal
Atomic # 6 Polarization: -0.91 SS G_CDS: -3.48 Total: -4.39 kcal
Atomic # 7 Polarization: -37.74 SS G_CDS: 0.31 Total: -37.43 kcal
Atomic # 8 Polarization: -23.16 SS G_CDS: -0.51 Total: -23.67 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -34.78 -8.97 -43.75 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000264880518.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.500 kcal
(2) G-P(sol) polarization free energy of solvation -34.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.277 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.251 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds