Wall clock time and date at job start Tue Mar 31 2020 11:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99801 * 2 1 4 4 H 1.48503 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47061 * 299.99906 * 3 2 1 6 6 H 1.48503 * 109.47075 * 60.00007 * 3 2 1 7 7 C 1.37881 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99537 * 269.99553 * 10 9 7 12 12 C 1.52998 * 109.47320 * 269.99999 * 11 10 9 13 13 C 1.52997 * 117.50231 * 243.62602 * 12 11 10 14 14 C 1.52998 * 117.50058 * 174.99994 * 12 11 10 15 15 C 1.34777 * 120.00199 * 90.00203 * 10 9 7 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 10 9 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 10 9 18 18 O 1.42899 * 109.46876 * 179.72354 * 17 15 10 19 19 C 1.35663 * 116.99498 * 179.97438 * 18 17 15 20 20 C 1.39075 * 119.88699 * 359.72835 * 19 18 17 21 21 C 1.37127 * 120.11326 * 179.72287 * 20 19 18 22 22 C 1.40039 * 119.88202 * 0.56917 * 21 20 19 23 23 C 1.46854 * 120.11277 * 179.68054 * 22 21 20 24 24 O 1.21294 * 119.99925 * 0.02562 * 23 22 21 25 25 C 1.40043 * 119.77137 * 359.70183 * 22 21 20 26 26 C 1.37117 * 119.88150 * 0.02562 * 25 22 21 27 27 H 0.96991 * 119.99957 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46867 * 59.99962 * 9 7 2 29 29 H 1.09005 * 109.46937 * 299.99970 * 9 7 2 30 30 H 1.08994 * 109.46996 * 30.00327 * 11 10 9 31 31 H 1.09001 * 109.46578 * 150.00190 * 11 10 9 32 32 H 1.09001 * 115.54721 * 29.33740 * 12 11 10 33 33 H 1.09000 * 117.49450 * 0.02562 * 13 12 11 34 34 H 1.08994 * 117.49954 * 145.01950 * 13 12 11 35 35 H 1.08996 * 117.50282 * 214.98430 * 14 12 11 36 36 H 1.09000 * 117.49560 * 0.02562 * 14 12 11 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 10 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 10 39 39 H 1.08001 * 119.94476 * 359.97438 * 20 19 18 40 40 H 1.07998 * 120.05806 * 180.26681 * 21 20 19 41 41 H 1.08004 * 119.99920 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.05478 * 179.97438 * 25 22 21 43 43 H 1.08002 * 119.93651 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6801 -4.1688 -1.2702 12 6 1.7498 -5.2998 -1.7130 13 6 2.3418 -6.7078 -1.8016 14 6 2.0112 -5.9352 -3.0801 15 6 2.6403 -4.1254 1.1658 16 8 2.2457 -3.6647 2.2161 17 6 3.6244 -5.2667 1.1660 18 8 3.9368 -5.6259 2.5134 19 6 4.8149 -6.6447 2.6912 20 6 5.3608 -7.2899 1.5867 21 6 6.2531 -8.3164 1.7611 22 6 6.6053 -8.7226 3.0541 23 6 7.5550 -9.8260 3.2467 24 8 8.0362 -10.3869 2.2849 25 6 6.0484 -8.0733 4.1629 26 6 5.1613 -7.0442 3.9775 27 1 -0.4849 0.8400 -0.0004 28 1 0.6249 -2.5563 -0.8920 29 1 0.6242 -2.5575 0.8881 30 1 2.6884 -3.3868 -2.0294 31 1 3.6895 -4.5588 -1.1392 32 1 0.7126 -5.2090 -1.3903 33 1 3.3941 -6.8284 -1.5439 34 1 1.6943 -7.5436 -1.5369 35 1 1.1460 -6.2627 -3.6566 36 1 2.8462 -5.5477 -3.6638 37 1 3.1870 -6.1236 0.6536 38 1 4.5350 -4.9612 0.6509 39 1 5.0846 -6.9792 0.5899 40 1 6.6797 -8.8139 0.9027 41 1 7.8251 -10.1381 4.2448 42 1 6.3165 -8.3831 5.1622 43 1 4.7316 -6.5425 4.8320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264880518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:04 Heat of formation + Delta-G solvation = -70.910885 kcal Electronic energy + Delta-G solvation = -25755.587006 eV Core-core repulsion = 21959.759265 eV Total energy + Delta-G solvation = -3795.827741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64816 -40.70427 -39.82659 -38.46453 -37.94186 -36.18922 -34.65738 -32.32522 -31.79381 -30.58795 -28.93407 -27.53053 -25.44277 -24.89410 -23.50963 -23.20757 -21.92535 -21.83499 -20.23887 -19.53939 -18.65638 -18.20508 -17.77840 -17.46442 -17.14313 -16.91876 -16.34355 -15.97320 -15.87322 -15.70339 -15.31746 -15.20766 -14.82221 -14.61364 -14.39142 -14.34460 -13.94818 -13.75137 -13.47884 -13.46938 -13.24678 -12.93171 -12.61729 -12.59229 -12.31153 -12.25614 -12.14007 -11.91287 -11.72793 -11.28187 -10.98263 -10.73486 -10.66833 -10.62803 -10.12588 -9.56555 -9.32236 -8.25035 -6.39543 -0.28349 0.36610 1.35568 1.38153 1.48500 1.52957 1.56343 1.61346 2.35124 2.56513 2.82571 2.93251 3.05358 3.36510 3.46734 3.72259 3.79107 3.85434 3.91208 3.98132 4.02734 4.14102 4.24582 4.28421 4.34040 4.55816 4.59924 4.69883 4.78461 4.82566 4.95249 5.00357 5.06263 5.16696 5.19101 5.25617 5.28559 5.32106 5.35738 5.50346 5.64943 5.77312 6.01922 6.22780 6.57416 6.59903 6.70158 7.20506 7.35341 8.82783 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.003038 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.350857 B = 9215.099849 C =10392.329798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.264 3.736 10 N -0.590 5.590 11 C 0.136 3.864 12 C -0.196 4.196 13 C -0.171 4.171 14 C -0.158 4.158 15 C 0.499 3.501 16 O -0.581 6.581 17 C 0.054 3.946 18 O -0.314 6.314 19 C 0.145 3.855 20 C -0.229 4.229 21 C -0.026 4.026 22 C -0.249 4.249 23 C 0.397 3.603 24 O -0.514 6.514 25 C -0.009 4.009 26 C -0.183 4.183 27 H 0.267 0.733 28 H 0.028 0.972 29 H -0.003 1.003 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.181 0.819 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.274 -19.935 0.536 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.209 1.209 7 C -0.582 4.582 8 H 0.074 0.926 9 C 0.143 3.857 10 N -0.322 5.322 11 C 0.014 3.986 12 C -0.216 4.216 13 C -0.207 4.207 14 C -0.196 4.196 15 C 0.286 3.714 16 O -0.461 6.461 17 C -0.024 4.024 18 O -0.226 6.226 19 C 0.099 3.901 20 C -0.247 4.247 21 C -0.045 4.045 22 C -0.250 4.250 23 C 0.259 3.741 24 O -0.391 6.391 25 C -0.027 4.027 26 C -0.201 4.201 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.015 0.985 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.170 0.830 42 H 0.198 0.802 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.052 -19.741 0.696 23.676 hybrid contribution -0.557 1.489 -0.143 1.596 sum 12.495 -18.252 0.554 22.126 Atomic orbital electron populations 1.70054 1.07581 1.28159 1.50965 1.25856 0.95789 1.03067 0.94386 0.85363 0.78827 0.78647 0.77948 1.19000 1.19348 1.20889 1.21723 0.93360 0.91802 1.51288 0.92633 1.18772 0.87741 0.83343 0.95873 1.48064 1.44816 1.33640 1.05650 1.21366 0.97031 0.95408 0.84779 1.22681 0.99976 0.95086 1.03815 1.23228 1.02486 0.93271 1.01748 1.23011 1.04118 1.02506 0.89919 1.20661 0.82634 0.84262 0.83800 1.90685 1.59670 1.62856 1.32921 1.22680 0.99328 0.97343 0.83009 1.86118 1.58939 1.49031 1.28557 1.19871 0.88076 0.86322 0.95860 1.21310 1.03502 1.01158 0.98730 1.21271 0.92399 0.92911 0.97874 1.21157 1.05961 1.03780 0.94149 1.24541 0.75684 0.78497 0.95339 1.90529 1.48573 1.52259 1.47689 1.21425 0.90558 0.90580 1.00131 1.20619 1.03263 1.01560 0.94682 0.92365 0.95420 0.98480 0.89984 0.87982 0.89925 0.86748 0.88314 0.88241 0.87085 0.86105 0.86488 0.83261 0.84364 0.83020 0.80156 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.54 -31.07 9.39 25.60 0.24 -30.83 16 8 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.26 14.12 5.16 85.63 0.44 14.56 16 10 N -0.59 -24.46 2.46 -826.15 -2.03 -26.49 16 11 C 0.14 3.95 5.50 86.38 0.48 4.43 16 12 C -0.20 -4.83 5.97 -10.80 -0.06 -4.90 16 13 C -0.17 -2.87 9.19 30.59 0.28 -2.58 16 14 C -0.16 -2.81 10.25 30.59 0.31 -2.50 16 15 C 0.50 21.00 7.75 87.66 0.68 21.67 16 16 O -0.58 -31.45 16.08 16.00 0.26 -31.20 16 17 C 0.05 1.54 3.76 71.24 0.27 1.80 16 18 O -0.31 -9.98 9.65 -70.75 -0.68 -10.66 16 19 C 0.14 3.49 6.70 22.67 0.15 3.65 16 20 C -0.23 -4.38 8.99 22.21 0.20 -4.18 16 21 C -0.03 -0.47 9.57 22.45 0.21 -0.25 16 22 C -0.25 -3.73 5.87 -20.15 -0.12 -3.85 16 23 C 0.40 4.98 11.44 70.08 0.80 5.78 16 24 O -0.51 -11.09 17.16 -3.07 -0.05 -11.14 16 25 C -0.01 -0.12 9.77 22.44 0.22 0.10 16 26 C -0.18 -3.62 9.95 22.21 0.22 -3.39 16 27 H 0.27 15.09 8.31 -92.72 -0.77 14.32 16 28 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 29 H 0.00 -0.18 7.42 -2.38 -0.02 -0.20 16 30 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 31 H 0.10 2.16 6.17 -2.39 -0.01 2.14 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.11 1.41 7.87 -2.39 -0.02 1.39 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 2.66 6.37 -2.38 -0.02 2.65 16 38 H 0.12 2.60 6.92 -2.39 -0.02 2.59 16 39 H 0.15 2.21 6.27 -2.91 -0.02 2.20 16 40 H 0.14 2.30 7.64 -2.91 -0.02 2.27 16 41 H 0.15 0.39 8.06 -2.91 -0.02 0.36 16 42 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 43 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -82.61 371.87 5.61 -77.00 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.02 Total: 11.03 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 4.79 Total: 0.43 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -1.74 Total: -82.22 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.48 Total: -53.00 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -82.61 5.61 -77.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264880518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.087 kcal (2) G-P(sol) polarization free energy of solvation -82.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds